Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002940

Physical Location & Seq

Genomic Coordinates Reverse (-)

7516794 .. 7518061

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0096300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAAAGAGATGGCCGGAAAGGTTCAGGCGCCGTCGAATCAATTAGGGGCGGGAGTGTGGGAATTGTACGAGAGTAAGGGGACGATAGGGAGGGGACGCTACGGAGCTGTGTATAAGGCGGTTCAAAAGGCTACGGGCCAAACTGTGGCCTTGAAGGAATTCGAGCACCCAGGTGATGGGCAAGGCTTCACTCCTGAGATTCTTCGCCAAGTGGCTCTTCTCAAAGACCTGAATCAGTCCAGATATGTTGTAGATCTCATCGACGTTGAGACTCCAAGTTCATCGGATACAAGTATCTATCTCGTTTTCGAGTATCTGGACATGAACTTGGGCCACTACATCAGCAAGTTTGAACCGGGATTAATGCCGAGAAGGACCATCAAGATGTTTGTGTTTAGTCTCTGCAAGGGGATGGCTCACATTCACTCACATTTTGTGATACATGGAGACCTCAAACCTGACAATCTTTTCGTGGATGAAAAGCCAAGGATCCTCAAGATCGGAGATCTTGGAGTTAGTCGCTCCATTACTACCCCCGCCACGGCTTTAACACCTGACATGGTCAGCTACCACTATACGGCGCCTGAAATTTACTTGGGAGGCAGATACGGCCGCAACGATGTCTGCAAGGTTAGTAGTTTTCATTTGTCATCTTTAGAAATTGTGGAGTTTGAATGCACCTATACTCCTTGCTGTGTGACATCGGAAGTGTCCGATTGTGGAGTCACATATGGTGAAGTGCTTGCAAGTCTAACAGTGTCTTACCTTTTTGGACTGCAGAGAATGGTTACCTATGATCCTGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

269

Amino Acids

29.85

Weight (kDa)

6.07

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	23 - 204	2.2e-36	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	26 - 204	1.3e-21	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09670 AT3G09670 AT5G02950 AT5G02950
fragaria_vesca	FvH4_6g15300 FvH4_6g15320 FvH4_6g15320
malus_domestica	MD12G1124400.v1.1
prunus_persica	Prupe.6G241400_v2.0.a1
pyrus_communis	pycom12g12280
rosa_chinensis	RchiOBHm_Chr3g0468721 RchiOBHm_Chr3g0468761 RchiOBHm_Chr3g0468791
rosa_laevigata	RLG00000024409 RLG00000024412 RLG00000024413
rosa_multiflora	Rmu_sc0001639.1_g000025 Rmu_sc0001639.1_g000031 Rmu_sc0001639.1_g000033
rosa_roxburghii	Rroxscaffold_6G00412560 Rroxscaffold_6G00412620 Rroxscaffold_6G00412630
rosa_rugosa	Rorug03G0096300 Rorug03G0096400 Rorug03G0096500
rosa_samantha	Rh3AG145400 Rh3AG145500 Rh3AG146200 Rh3BG168100 Rh3BG168300 Rh3BG168400 Rh3BG168800 Rh3DG166700 Rh3DG166800 Rh3DG167100
rosa_wichuraiana	Rw3G013710 Rw3G013720 Rw3G013750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	28, 580
AccB7I	CCANNNNNTGG	2 cut(s)	145, 176
AciI	CCGC	4 cut(s)	50, 119, 537, 613
AclWI	GGATC	3 cut(s)	484, 497, 791
AcoI	YGGCCR	2 cut(s)	12, 610
AcsI	RAATTY	2 cut(s)	158, 588
AcyI	GRCGYC	2 cut(s)	29, 581
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	4 cut(s)	145, 176, 541, 577
AgsI	TTSAA	4 cut(s)	125, 154, 353, 674
AjnI	CCWGG	1 cut(s)	169
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AleI	CACNNNNGTG	1 cut(s)	171
AluBI	AGCT	2 cut(s)	107, 567
AluI	AGCT	2 cut(s)	107, 567
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	3 cut(s)	263, 404, 441
AlwI	GGATC	3 cut(s)	484, 497, 791
AoxI	GGCC	5 cut(s)	12, 136, 147, 331, 610
ApoI	RAATTY	2 cut(s)	158, 588
ArsI	GACNNNNNNTTYG	2 cut(s)	452, 484
AseI	ATTAAT	1 cut(s)	362
Asp700I	GAANNNNTTC	1 cut(s)	158
AspLEI	GCGC	2 cut(s)	31, 583
AspS9I	GGNCC	3 cut(s)	136, 331, 375
AsuC2I	CCSGG	1 cut(s)	357
AsuHPI	GGTGA	2 cut(s)	185, 746
AvaII	GGWCC	1 cut(s)	375
BamHI	GGATCC	1 cut(s)	489
BanI	GGYRCC	2 cut(s)	28, 580
Bbv12I	GWGCWC	1 cut(s)	168
BccI	CCATC	4 cut(s)	4, 170, 386, 406
BceAI	ACGGC	4 cut(s)	16, 558, 594, 625
BciT130I	CCWGG	1 cut(s)	171
BciVI	GTATCC	1 cut(s)	280
BcnI	CCSGG	1 cut(s)	357
BcoDI	GTCTC	3 cut(s)	263, 404, 441
BfmI	CTRYAG	1 cut(s)	776
BfoI	RGCGCY	2 cut(s)	32, 584
BfuI	GTATCC	1 cut(s)	280
BglII	AGATCT	2 cut(s)	253, 505
BisI	GCNGC	1 cut(s)	613
BlsI	GCNGC	1 cut(s)	614
Bme1390I	CCNGG	2 cut(s)	171, 357
Bme18I	GGWCC	1 cut(s)	375
BmgT120I	GGNCC	3 cut(s)	136, 331, 375
BmiI	GGNNCC	3 cut(s)	30, 491, 582
BmrFI	CCNGG	2 cut(s)	171, 357
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	357
BsaHI	GRCGYC	2 cut(s)	29, 581
BsaI	GGTCTC	1 cut(s)	441
BsaJI	CCNNGG	3 cut(s)	169, 485, 540
BsaXI	ACNNNNNCTCC	2 cut(s)	670, 700
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 176, 541, 577
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	3 cut(s)	169, 485, 540
BseGI	GGATG	2 cut(s)	417, 481
BseLI	CCNNNNNNNGG	4 cut(s)	145, 176, 541, 577
BseMII	CTCAG	1 cut(s)	186
BseX3I	CGGCCG	1 cut(s)	610
Bsh1285I	CGRYCG	1 cut(s)	613
BshFI	GGCC	5 cut(s)	14, 138, 149, 333, 612
BshNI	GGYRCC	2 cut(s)	28, 580
BsiEI	CGRYCG	1 cut(s)	613
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	2 cut(s)	15, 356
BslFI	GGGAC	2 cut(s)	94, 108
BslI	CCNNNNNNNGG	4 cut(s)	145, 176, 541, 577
BsmAI	GTCTC	3 cut(s)	263, 404, 441
BsmFI	GGGAC	2 cut(s)	94, 108
BsmI	GAATGC	1 cut(s)	680
BsnI	GGCC	5 cut(s)	14, 138, 149, 333, 612
Bso31I	GGTCTC	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	5 cut(s)	253, 489, 498, 505, 796
BspACI	CCGC	4 cut(s)	50, 119, 537, 613
BspANI	GGCC	5 cut(s)	14, 138, 149, 333, 612
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	3 cut(s)	30, 491, 582
BspMAI	CTGCAG	1 cut(s)	780
BspPI	GGATC	3 cut(s)	484, 497, 791
BspQI	GCTCTTC	1 cut(s)	222
BspT107I	GGYRCC	2 cut(s)	28, 580
BspTNI	GGTCTC	1 cut(s)	441
BssECI	CCNNGG	3 cut(s)	169, 485, 540
BssMI	GATC	5 cut(s)	253, 489, 498, 505, 796
BssNI	GRCGYC	2 cut(s)	29, 581
BssT1I	CCWWGG	1 cut(s)	485
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	2 cut(s)	145, 757
Bst6I	CTCTTC	1 cut(s)	222
BstACI	GRCGYC	2 cut(s)	29, 581
BstC8I	GCNNGC	1 cut(s)	744
BstDEI	CTNAG	1 cut(s)	195
BstDSI	CCRYGG	1 cut(s)	540
BstEII	GGTNACC	1 cut(s)	787
BstF5I	GGATG	2 cut(s)	417, 481
BstH2I	RGCGCY	2 cut(s)	32, 584
BstHHI	GCGC	2 cut(s)	31, 583
BstKTI	GATC	5 cut(s)	256, 492, 501, 508, 799
BstMAI	GTCTC	3 cut(s)	263, 404, 441
BstMBI	GATC	5 cut(s)	253, 489, 498, 505, 796
BstMCI	CGRYCG	1 cut(s)	613
BstMWI	GCNNNNNNNGC	1 cut(s)	609
BstNI	CCWGG	1 cut(s)	171
BstPI	GGTNACC	1 cut(s)	787
BstSCI	CCNGG	2 cut(s)	169, 355
BstSFI	CTRYAG	1 cut(s)	776
BstX2I	RGATCY	3 cut(s)	253, 489, 505
BstYI	RGATCY	3 cut(s)	253, 489, 505
BstZI	CGGCCG	1 cut(s)	610
BsuI	GTATCC	1 cut(s)	280
BsuRI	GGCC	5 cut(s)	14, 138, 149, 333, 612
BtgI	CCRYGG	1 cut(s)	540
BtsCI	GGATG	2 cut(s)	417, 481
BtsIMutI	CAGTG	1 cut(s)	762
Cac8I	GCNNGC	1 cut(s)	744
CfoI	GCGC	2 cut(s)	31, 583
Cfr13I	GGNCC	3 cut(s)	136, 331, 375
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	3 cut(s)	322, 443, 559
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	1 cut(s)	195
DinI	GGCGCC	2 cut(s)	30, 582
DpnI	GATC	5 cut(s)	255, 491, 500, 507, 798
DpnII	GATC	5 cut(s)	253, 489, 498, 505, 796
EaeI	YGGCCR	2 cut(s)	12, 610
EagI	CGGCCG	1 cut(s)	610
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
EclXI	CGGCCG	1 cut(s)	610
Eco130I	CCWWGG	1 cut(s)	485
Eco31I	GGTCTC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	375
Eco52I	CGGCCG	1 cut(s)	610
Eco91I	GGTNACC	1 cut(s)	787
EcoO65I	GGTNACC	1 cut(s)	787
EcoRI	GAATTC	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	485
EgeI	GGCGCC	2 cut(s)	30, 582
EheI	GGCGCC	2 cut(s)	30, 582
ErhI	CCWWGG	1 cut(s)	485
FaeI	CATG	3 cut(s)	325, 446, 562
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FaqI	GGGAC	2 cut(s)	94, 108
FatI	CATG	3 cut(s)	321, 442, 558
FauI	CCCGC	2 cut(s)	43, 544
FauNDI	CATATG	1 cut(s)	730
Fnu4HI	GCNGC	1 cut(s)	613
FokI	GGATG	2 cut(s)	424, 488
Fsp4HI	GCNGC	1 cut(s)	613
GlaI	GCGC	2 cut(s)	30, 582
GluI	GCNGC	1 cut(s)	613
HaeII	RGCGCY	2 cut(s)	32, 584
HaeIII	GGCC	5 cut(s)	14, 138, 149, 333, 612
HapII	CCGG	2 cut(s)	15, 356
HgaI	GACGC	1 cut(s)	105
HhaI	GCGC	2 cut(s)	31, 583
Hin1I	GRCGYC	2 cut(s)	29, 581
Hin1II	CATG	3 cut(s)	325, 446, 562
Hin6I	GCGC	2 cut(s)	29, 581
HinP1I	GCGC	2 cut(s)	29, 581
HinfI	GANTC	5 cut(s)	37, 199, 232, 271, 723
HpaII	CCGG	2 cut(s)	15, 356
HphI	GGTGA	2 cut(s)	185, 746
Hpy188I	TCNGA	4 cut(s)	286, 503, 706, 715
Hpy188III	TCNNGA	5 cut(s)	194, 240, 317, 382, 496
Hpy99I	CGWCG	2 cut(s)	37, 266
HpyAV	CCTTC	2 cut(s)	148, 366
HpyCH4III	ACNGT	2 cut(s)	145, 757
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	6 cut(s)	405, 627, 678, 746, 778, 803
HpyF10VI	GCNNNNNNNGC	1 cut(s)	609
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	264
Hsp92I	GRCGYC	2 cut(s)	29, 581
Hsp92II	CATG	3 cut(s)	325, 446, 562
HspAI	GCGC	2 cut(s)	29, 581
KasI	GGCGCC	2 cut(s)	28, 580
Kzo9I	GATC	5 cut(s)	253, 489, 498, 505, 796
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	2 cut(s)	104, 527
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	3 cut(s)	697, 724, 787
MalI	GATC	5 cut(s)	255, 491, 500, 507, 798
MboI	GATC	5 cut(s)	253, 489, 498, 505, 796
MboII	GAAGA	2 cut(s)	194, 209
MflI	RGATCY	3 cut(s)	253, 489, 505
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	5 cut(s)	41, 62, 158, 588, 660
Mly113I	GGCGCC	2 cut(s)	29, 581
MlyI	GAGTC	2 cut(s)	265, 732
MnlI	CCTC	4 cut(s)	84, 461, 503, 593
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	2 cut(s)	362, 548
MslI	CAYNNNNRTG	2 cut(s)	171, 383
MspI	CCGG	2 cut(s)	15, 356
MspR9I	CCNGG	2 cut(s)	171, 357
Mva1269I	GAATGC	1 cut(s)	680
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	609
NarI	GGCGCC	2 cut(s)	29, 581
NciI	CCSGG	1 cut(s)	357
NdeI	CATATG	1 cut(s)	730
NdeII	GATC	5 cut(s)	253, 489, 498, 505, 796
NlaIII	CATG	3 cut(s)	325, 446, 562
NlaIV	GGNNCC	3 cut(s)	30, 491, 582
NmeAIII	GCCGAG	1 cut(s)	393
NmuCI	GTSAC	2 cut(s)	697, 724
OliI	CACNNNNGTG	1 cut(s)	171
PciSI	GCTCTTC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	615
PctI	GAATGC	1 cut(s)	680
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	3 cut(s)	37, 199, 232
PflFI	GACNNNGTC	1 cut(s)	560
PflMI	CCANNNNNTGG	2 cut(s)	145, 176
PkrI	GCNGC	1 cut(s)	614
PleI	GAGTC	2 cut(s)	265, 731
PluTI	GGCGCC	2 cut(s)	32, 584
PpsI	GAGTC	2 cut(s)	265, 731
PshBI	ATTAAT	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	169
PspEI	GGTNACC	1 cut(s)	787
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	3 cut(s)	30, 491, 582
PspPI	GGNCC	3 cut(s)	136, 331, 375
PstI	CTGCAG	1 cut(s)	780
PsuI	RGATCY	3 cut(s)	253, 489, 505
PsyI	GACNNNGTC	1 cut(s)	560
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	2 cut(s)	171, 383
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	362, 548
SatI	GCNGC	1 cut(s)	613
Sau3AI	GATC	5 cut(s)	253, 489, 498, 505, 796
Sau96I	GGNCC	3 cut(s)	136, 331, 375
SchI	GAGTC	2 cut(s)	265, 732
ScrFI	CCNGG	2 cut(s)	171, 357
SduI	GDGCHC	1 cut(s)	168
SfcI	CTRYAG	1 cut(s)	776
SfoI	GGCGCC	2 cut(s)	30, 582
SinI	GGWCC	1 cut(s)	375
SmiMI	CAYNNNNRTG	2 cut(s)	171, 383
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	5 cut(s)	41, 62, 158, 588, 660
SsiI	CCGC	4 cut(s)	50, 119, 537, 613
SspDI	GGCGCC	2 cut(s)	28, 580
StyD4I	CCNGG	2 cut(s)	169, 355
StyI	CCWWGG	1 cut(s)	485
TaaI	ACNGT	2 cut(s)	145, 757
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	4 cut(s)	35, 162, 261, 309
TasI	AATT	5 cut(s)	41, 62, 158, 588, 660
TauI	GCSGC	1 cut(s)	615
TfiI	GAWTC	3 cut(s)	37, 199, 232
Tru1I	TTAA	2 cut(s)	362, 548
Tru9I	TTAA	2 cut(s)	362, 548
TscAI	CASTG	1 cut(s)	762
TseFI	GTSAC	2 cut(s)	697, 724
Tsp45I	GTSAC	2 cut(s)	697, 724
TspDTI	ATGAA	5 cut(s)	17, 270, 338, 492, 632
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	762
Tth111I	GACNNNGTC	1 cut(s)	560
Van91I	CCANNNNNTGG	2 cut(s)	145, 176
VpaK11BI	GGWCC	1 cut(s)	375
VspI	ATTAAT	1 cut(s)	362
XapI	RAATTY	2 cut(s)	158, 588
XmnI	GAANNNNTTC	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.