Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001639.1

Orthogroup ID

OG0002940

Physical Location & Seq

Genomic Coordinates Reverse (-)

137569 .. 139035

Gene Structure 1467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001639.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

atggaaggtaaagttgtgagtgctctgggagtggaatttactaataacagtgagtctttggattatcaagacttcaatgctagcggctgttttaagacggtaaattgtgatggagttgaaaatgaggccttggaagttaatgtggaagaagagagtaatcgaaatgaattgacgccgatgagggtccctgtgagtactgaatgcgaggttgatttgctcagtgttgctgattttatccggtattcgagaatggacgggaatgtgtcaggtggtgtgaatggaaaatcttgttcttccaagctagaatttgaagtttctgatctagtatggggcaaagtaaggactcatccatggtggcccgggcagatttgtgatccttcggctgcgtcagaactggcaaagaagtgttttaagaggggtagttatctgatagcttactttggggatcagacatttgcttggaatgaagcaccaaagattaagccctttctggagcactgctcaaaaatggagaagcagagtgatatggaagaattccaaaacgcagttggttgtgcgttggacgaagtgtcgagaagggtagagtttgggctggcctgttcttgcatatccaaacgagaatatgcaaagctcaaaactcagaagattattaatgctggaatcaggaaagaagcagcaaatagaagagatggtggtgacagttctcttagagccactttttttgaacctgcgaaagtcattaagtttataaaaaagttggctcagttgccatatggcaaagctgacagactagaacttgtaacatctctagcccagctgtcagctttcttgcgttggaagagttatgtgcctctgccagaggagaatgatactgacattctcctattgggagagaagaaccactgcaatgaagtaagtgatgaagcactctcagtacttgagaatgagaagttggtgcaaaaatcagatagtaaagagaactcattacgtgagtgcaaggacatatcagattcaaaagctcagaggtgtttgtttcctatgagtgagaatggatcagaagggaaagctggcagtgaattgattttgcaaccttgcaacaaaagaaggggtcttgatgctatagctgatgaagatgtactcccagtaatcaaagataactcaatgcataagtgtcggcacatatctgaacatagtatgaatctgagtgaagaagagcaaagcttgtcagatttggagggtacgaagtgtttgtctactccaatgagtgagaatggattagaagagaaaggtgatggtaaattgatttcacaaccttctgttaagaaacgaaaggaagttgatgctatggctgatgatgctgctgtgaaacataggaaaagtgattcatcacaaggtattggtagcaatgcgaactgtcagttgtttgaagttgaagacttttttaacctgtttttacagcagtcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

488

Amino Acids

54.33

Weight (kDa)

5.1

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09670 AT3G09670 AT5G02950 AT5G02950
fragaria_vesca	FvH4_6g15300 FvH4_6g15320 FvH4_6g15320
malus_domestica	MD12G1124400.v1.1
prunus_persica	Prupe.6G241400_v2.0.a1
pyrus_communis	pycom12g12280
rosa_chinensis	RchiOBHm_Chr3g0468721 RchiOBHm_Chr3g0468761 RchiOBHm_Chr3g0468791
rosa_laevigata	RLG00000024409 RLG00000024412 RLG00000024413
rosa_multiflora	Rmu_sc0001639.1_g000025 Rmu_sc0001639.1_g000031 Rmu_sc0001639.1_g000033
rosa_roxburghii	Rroxscaffold_6G00412560 Rroxscaffold_6G00412620 Rroxscaffold_6G00412630
rosa_rugosa	Rorug03G0096300 Rorug03G0096400 Rorug03G0096500
rosa_samantha	Rh3AG145400 Rh3AG145500 Rh3AG146200 Rh3BG168100 Rh3BG168300 Rh3BG168400 Rh3BG168800 Rh3DG166700 Rh3DG166800 Rh3DG167100
rosa_wichuraiana	Rw3G013710 Rw3G013720 Rw3G013750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	749
Acc36I	ACCTGC	1 cut(s)	736
AccI	GTMKAC	1 cut(s)	1253
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	3 cut(s)	368, 453, 1060
AcsI	RAATTY	3 cut(s)	35, 305, 533
AcyI	GRCGYC	1 cut(s)	173
AfaI	GTAC	4 cut(s)	196, 936, 1137, 1240
AgsI	TTSAA	7 cut(s)	76, 119, 311, 725, 1014, 1427, 1433
AhdI	GACNNNNNGTC	1 cut(s)	568
AjuI	GAANNNNNNNTTGG	2 cut(s)	935, 967
Alw21I	GWGCWC	2 cut(s)	25, 498
AlwI	GGATC	3 cut(s)	368, 453, 1060
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	3 cut(s)	126, 356, 594
ApeKI	GCWGC	3 cut(s)	383, 674, 1358
ApoI	RAATTY	3 cut(s)	35, 305, 533
ArsI	GACNNNNNNTTYG	2 cut(s)	1235, 1267
AseI	ATTAAT	1 cut(s)	651
AspS9I	GGNCC	2 cut(s)	184, 357
AsuC2I	CCSGG	2 cut(s)	360, 361
AsuHPI	GGTGA	2 cut(s)	707, 1301
AsuNHI	GCTAGC	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	1440
Bbv12I	GWGCWC	2 cut(s)	25, 498
BbvI	GCAGC	3 cut(s)	370, 686, 1345
BccI	CCATC	3 cut(s)	104, 683, 1286
BcgI	CGANNNNNNTGC	2 cut(s)	1154, 1188
BcnI	CCSGG	2 cut(s)	360, 361
BfaI	CTAG	5 cut(s)	81, 302, 323, 791, 809
BfmI	CTRYAG	1 cut(s)	1119
BfuAI	ACCTGC	1 cut(s)	736
BisI	GCNGC	4 cut(s)	85, 384, 675, 1359
BlsI	GCNGC	4 cut(s)	86, 385, 676, 1360
BmcAI	AGTACT	2 cut(s)	196, 936
Bme1390I	CCNGG	2 cut(s)	360, 361
Bme18I	GGWCC	1 cut(s)	184
BmeRI	GACNNNNNGTC	1 cut(s)	568
BmeT110I	CYCGRG	1 cut(s)	359
BmgT120I	GGNCC	2 cut(s)	184, 357
BmiI	GGNNCC	2 cut(s)	185, 186
BmrFI	CCNGG	2 cut(s)	360, 361
BmrI	ACTGGG	1 cut(s)	1136
BmsI	GCATC	3 cut(s)	1105, 1330, 1345
BmtI	GCTAGC	1 cut(s)	84
BmuI	ACTGGG	1 cut(s)	1136
BpiI	GAAGAC	1 cut(s)	1440
BplI	GAGNNNNNCTC	2 cut(s)	485, 517
BpmI	CTGGAG	1 cut(s)	512
BpuEI	CTTGAG	1 cut(s)	959
BpuMI	CCSGG	2 cut(s)	360, 361
BsaAI	YACGTR	1 cut(s)	989
BsaHI	GRCGYC	1 cut(s)	173
BsaJI	CCNNGG	3 cut(s)	129, 350, 359
BsaWI	WCCGGW	1 cut(s)	237
Bse1I	ACTGG	2 cut(s)	399, 1142
Bse3DI	GCAATG	2 cut(s)	913, 1411
BseDI	CCNNGG	3 cut(s)	129, 350, 359
BseGI	GGATG	1 cut(s)	346
BseMI	GCAATG	2 cut(s)	913, 1411
BseMII	CTCAG	6 cut(s)	232, 653, 776, 945, 1034, 1193
BseNI	ACTGG	2 cut(s)	399, 1142
BseRI	GAGGAG	1 cut(s)	875
BseXI	GCAGC	3 cut(s)	370, 686, 1345
BseYI	CCCAGC	1 cut(s)	813
BshFI	GGCC	3 cut(s)	128, 358, 596
BsiHKAI	GWGCWC	2 cut(s)	25, 498
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	238, 360
BslFI	GGGAC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	206
BsnI	GGCC	3 cut(s)	128, 358, 596
BsoBI	CYCGRG	1 cut(s)	359
Bsp1286I	GDGCHC	2 cut(s)	25, 498
Bsp143I	GATC	4 cut(s)	319, 373, 445, 1052
Bsp19I	CCATGG	1 cut(s)	350
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	3 cut(s)	128, 358, 596
BspCNI	CTCAG	6 cut(s)	231, 652, 775, 944, 1033, 1194
BspLI	GGNNCC	2 cut(s)	185, 186
BspMI	ACCTGC	1 cut(s)	736
BspOI	GCTAGC	1 cut(s)	84
BspPI	GGATC	3 cut(s)	368, 453, 1060
BspQI	GCTCTTC	1 cut(s)	1206
BsrDI	GCAATG	2 cut(s)	913, 1411
BsrI	ACTGG	2 cut(s)	399, 1142
BssECI	CCNNGG	3 cut(s)	129, 350, 359
BssMI	GATC	4 cut(s)	319, 373, 445, 1052
BssNI	GRCGYC	1 cut(s)	173
BssT1I	CCWWGG	2 cut(s)	129, 350
Bst4CI	ACNGT	4 cut(s)	50, 100, 701, 1415
Bst6I	CTCTTC	5 cut(s)	144, 679, 833, 1206, 1275
BstACI	GRCGYC	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	989
BstC8I	GCNNGC	3 cut(s)	82, 594, 1069
BstDEI	CTNAG	7 cut(s)	218, 639, 707, 762, 931, 1020, 1202
BstDSI	CCRYGG	1 cut(s)	350
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	4 cut(s)	322, 376, 448, 1055
BstMBI	GATC	4 cut(s)	319, 373, 445, 1052
BstMWI	GCNNNNNNNGC	1 cut(s)	1355
BstSCI	CCNGG	2 cut(s)	358, 359
BstSFI	CTRYAG	1 cut(s)	1119
BstV1I	GCAGC	3 cut(s)	370, 686, 1345
BstV2I	GAAGAC	1 cut(s)	1440
BsuRI	GGCC	3 cut(s)	128, 358, 596
BtgI	CCRYGG	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	346
BtsI	GCAGTG	3 cut(s)	496, 901, 1078
BtsIMutI	CAGTG	5 cut(s)	55, 226, 496, 901, 1078
BveI	ACCTGC	1 cut(s)	736
Cac8I	GCNNGC	3 cut(s)	82, 594, 1069
Cfr13I	GGNCC	2 cut(s)	184, 357
Cfr9I	CCCGGG	1 cut(s)	359
CseI	GACGC	2 cut(s)	181, 375
Csp6I	GTAC	4 cut(s)	195, 935, 1136, 1239
CspCI	CAANNNNNGTGG	2 cut(s)	703, 738
CviAII	CATG	1 cut(s)	351
CviQI	GTAC	4 cut(s)	195, 935, 1136, 1239
DdeI	CTNAG	7 cut(s)	218, 639, 707, 762, 931, 1020, 1202
DpnI	GATC	4 cut(s)	321, 375, 447, 1054
DpnII	GATC	4 cut(s)	319, 373, 445, 1052
DriI	GACNNNNNGTC	1 cut(s)	568
Eam1104I	CTCTTC	5 cut(s)	144, 679, 833, 1206, 1275
Eam1105I	GACNNNNNGTC	1 cut(s)	568
EarI	CTCTTC	5 cut(s)	144, 679, 833, 1206, 1275
Eco130I	CCWWGG	2 cut(s)	129, 350
Eco147I	AGGCCT	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	184
Eco88I	CYCGRG	1 cut(s)	359
EcoO109I	RGGNCCY	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	533
EcoT14I	CCWWGG	2 cut(s)	129, 350
EcoT22I	ATGCAT	1 cut(s)	1167
ErhI	CCWWGG	2 cut(s)	129, 350
FaeI	CATG	1 cut(s)	354
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	1 cut(s)	350
FauNDI	CATATG	1 cut(s)	772
FblI	GTMKAC	1 cut(s)	1253
Fnu4HI	GCNGC	4 cut(s)	85, 384, 675, 1359
FokI	GGATG	1 cut(s)	333
Fsp4HI	GCNGC	4 cut(s)	85, 384, 675, 1359
FspBI	CTAG	5 cut(s)	81, 302, 323, 791, 809
GluI	GCNGC	4 cut(s)	85, 384, 675, 1359
GsaI	CCCAGC	1 cut(s)	817
GsuI	CTGGAG	1 cut(s)	512
HaeIII	GGCC	3 cut(s)	128, 358, 596
HapII	CCGG	2 cut(s)	238, 360
HgaI	GACGC	2 cut(s)	181, 375
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	1 cut(s)	354
HindIII	AAGCTT	1 cut(s)	1219
HinfI	GANTC	6 cut(s)	53, 343, 660, 1010, 1198, 1382
HpaII	CCGG	2 cut(s)	238, 360
HphI	GGTGA	2 cut(s)	707, 1301
Hpy166II	GTNNAC	1 cut(s)	1254
Hpy188III	TCNNGA	6 cut(s)	68, 246, 491, 573, 664, 1112
Hpy8I	GTNNAC	1 cut(s)	1254
HpyAV	CCTTC	5 cut(s)	387, 570, 1052, 1098, 1323
HpyCH4III	ACNGT	4 cut(s)	50, 100, 701, 1415
HpyCH4IV	ACGT	1 cut(s)	988
HpyCH4V	TGCA	8 cut(s)	606, 626, 906, 958, 996, 1087, 1095, 1165
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1355
HpyF3I	CTNAG	7 cut(s)	218, 639, 707, 762, 931, 1020, 1202
HpySE526I	ACGT	1 cut(s)	988
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	1 cut(s)	354
KflI	GGGWCCC	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	319, 373, 445, 1052
LguI	GCTCTTC	1 cut(s)	1206
LmnI	GCTCC	1 cut(s)	493
Lsp1109I	GCAGC	3 cut(s)	370, 686, 1345
LweI	GCATC	3 cut(s)	1105, 1330, 1345
MaeI	CTAG	5 cut(s)	81, 302, 323, 791, 809
MaeII	ACGT	1 cut(s)	988
MaeIII	GTNAC	2 cut(s)	695, 799
MalI	GATC	4 cut(s)	321, 375, 447, 1054
MboI	GATC	4 cut(s)	319, 373, 445, 1052
MhlI	GDGCHC	2 cut(s)	25, 498
MluCI	AATT	7 cut(s)	35, 103, 167, 305, 533, 1076, 1298
MlyI	GAGTC	2 cut(s)	62, 337
MmeI	TCCRAC	2 cut(s)	540, 815
MnlI	CCTC	8 cut(s)	118, 174, 199, 408, 853, 861, 1017, 1228
Mph1103I	ATGCAT	1 cut(s)	1167
MseI	TTAA	9 cut(s)	93, 138, 411, 480, 651, 741, 1320, 1443, 1465
MslI	CAYNNNNRTG	1 cut(s)	906
MspA1I	CMGCKG	1 cut(s)	817
MspI	CCGG	2 cut(s)	238, 360
MspR9I	CCNGG	2 cut(s)	360, 361
Mva1269I	GAATGC	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	1355
NciI	CCSGG	2 cut(s)	360, 361
NcoI	CCATGG	1 cut(s)	350
NdeI	CATATG	1 cut(s)	772
NdeII	GATC	4 cut(s)	319, 373, 445, 1052
NheI	GCTAGC	1 cut(s)	80
NlaIII	CATG	1 cut(s)	354
NlaIV	GGNNCC	2 cut(s)	185, 186
NmuCI	GTSAC	1 cut(s)	695
NsiI	ATGCAT	1 cut(s)	1167
PceI	AGGCCT	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	1206
PctI	GAATGC	1 cut(s)	206
PfeI	GAWTC	4 cut(s)	660, 1010, 1198, 1382
PkrI	GCNGC	4 cut(s)	86, 385, 676, 1360
PleI	GAGTC	2 cut(s)	61, 337
PpsI	GAGTC	2 cut(s)	61, 337
Ppu21I	YACGTR	1 cut(s)	989
PpuMI	RGGWCCY	1 cut(s)	184
PshBI	ATTAAT	1 cut(s)	651
PsiI	TTATAA	1 cut(s)	749
Psp5II	RGGWCCY	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	813
PspN4I	GGNNCC	2 cut(s)	185, 186
PspPI	GGNCC	2 cut(s)	184, 357
PspPPI	RGGWCCY	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	817
RsaI	GTAC	4 cut(s)	196, 936, 1137, 1240
RsaNI	GTAC	4 cut(s)	195, 935, 1136, 1239
RseI	CAYNNNNRTG	1 cut(s)	906
SapI	GCTCTTC	1 cut(s)	1206
SaqAI	TTAA	9 cut(s)	93, 138, 411, 480, 651, 741, 1320, 1443, 1465
SatI	GCNGC	4 cut(s)	85, 384, 675, 1359
Sau3AI	GATC	4 cut(s)	319, 373, 445, 1052
Sau96I	GGNCC	2 cut(s)	184, 357
ScaI	AGTACT	2 cut(s)	196, 936
SchI	GAGTC	2 cut(s)	62, 337
ScrFI	CCNGG	2 cut(s)	360, 361
SduI	GDGCHC	2 cut(s)	25, 498
SfaNI	GCATC	3 cut(s)	1105, 1330, 1345
SfcI	CTRYAG	1 cut(s)	1119
SinI	GGWCC	1 cut(s)	184
SmaI	CCCGGG	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	906
SmlI	CTYRAG	1 cut(s)	938
SmoI	CTYRAG	1 cut(s)	938
SrfI	GCCCGGGC	1 cut(s)	361
Sse9I	AATT	7 cut(s)	35, 103, 167, 305, 533, 1076, 1298
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	5 cut(s)	81, 302, 323, 791, 809
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	2 cut(s)	358, 359
StyI	CCWWGG	2 cut(s)	129, 350
TaaI	ACNGT	4 cut(s)	50, 100, 701, 1415
TaiI	ACGT	1 cut(s)	991
TaqI	TCGA	3 cut(s)	160, 245, 572
TasI	AATT	7 cut(s)	35, 103, 167, 305, 533, 1076, 1298
TatI	WGTACW	3 cut(s)	194, 934, 1135
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	4 cut(s)	660, 1010, 1198, 1382
Tru1I	TTAA	9 cut(s)	93, 138, 411, 480, 651, 741, 1320, 1443, 1465
Tru9I	TTAA	9 cut(s)	93, 138, 411, 480, 651, 741, 1320, 1443, 1465
TscAI	CASTG	5 cut(s)	55, 226, 503, 908, 1078
TseFI	GTSAC	1 cut(s)	695
TseI	GCWGC	3 cut(s)	383, 674, 1358
Tsp45I	GTSAC	1 cut(s)	695
TspDTI	ATGAA	7 cut(s)	180, 480, 924, 936, 1143, 1211, 1374
TspMI	CCCGGG	1 cut(s)	359
TspRI	CASTG	5 cut(s)	55, 226, 503, 908, 1078
VpaK11BI	GGWCC	1 cut(s)	184
VspI	ATTAAT	1 cut(s)	651
XapI	RAATTY	3 cut(s)	35, 305, 533
XcmI	CCANNNNNNNNNTGG	1 cut(s)	545
XmaI	CCCGGG	1 cut(s)	359
XmiI	GTMKAC	1 cut(s)	1253
XspI	CTAG	5 cut(s)	81, 302, 323, 791, 809
ZrmI	AGTACT	2 cut(s)	196, 936
Zsp2I	ATGCAT	1 cut(s)	1167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.