RchiOBHm_Chr3g0468761

PWWP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002940
Physical Location & Seq
Forward (+)
14671337 .. 14672474
1138 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43463

Sequence Viewer

Length: 810 bp
ATGAGTGAGAATACATCAGAAGGGGAAACTAGCAGTAAATTGATTTTGCAATCTTCTAATGAGAATCCAGGGGAAGTTGATGGTATAGCGGATGAAGATGTGACTGCAGTCAGTGAAGCTGCACTTCCAGTAACTAAGGATGAGAAATTGGTGCGGAAATCAGAAAATAAAGATTACTCATTGCACAAGTGTAAGCACATGTCTGAGTGCAGTATGAATTCGAGTGAAAAAGAGAAAACATCATCAGATTTAAAGGCTCATAAGTGTTTGTCTACTCCAATTTGTCAGAATGGATCAGAAGGGAAAGCAGGCAGTAAATTGACTTTACAGTCCTGTGTAAAGCGCAAGGCAGTTGATGTTATAGCTGATGACTTTGTGCTGAAACATAGGAAAAGTGATTCATCAACGAGGACTAAAGATGCACTTCCGCTAACTAAGGATGAGATGTTGGTGAGGAAATCAGAAAGTAAAAATAACTCGATGCATAAGTGCAAGAACATATGTGGAGATATGATGAATCCAAGTGAAGAACAGAAAAGTTTATCGGATTTAAATGGTGGGAAGTGTTTGTCTCCAACAAGTGAGTATGGATTTCCTTCTGATCGTACATTGACTTTGCACCCCTCTAGTAATATACGAAAGGAAGTCGATCCTATTCCTATAGCTGATGACTGTGCACTAAAAGATTGGGAAAGCAATTTATCAGCAGGGGATGTTGAGCAGTCTTTTGGAGTTGCAGATTTTATTAACTTGTTTCTACAGAGGGAGCACATTTTTGGAGCCGGAGAAAGGATCTGTCTGGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWWP

Protein Analysis

269

Amino Acids

29.52

Weight (kDa)

5.4

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 328
AccI GTMKAC 1 cut(s) 272
AciI CCGC 3 cut(s) 89, 154, 428
AclWI GGATC 3 cut(s) 301, 644, 800
AcsI RAATTY 1 cut(s) 217
AfaI GTAC 1 cut(s) 607
AfiI CCNNNNNNNGG 1 cut(s) 789
AflIII ACRYGT 1 cut(s) 198
AgsI TTSAA 1 cut(s) 806
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 3 cut(s) 119, 365, 665
AluI AGCT 3 cut(s) 119, 365, 665
Alw21I GWGCWC 2 cut(s) 679, 771
Alw26I GTCTC 1 cut(s) 576
Alw44I GTGCAC 1 cut(s) 675
AlwI GGATC 3 cut(s) 301, 644, 800
ApaLI GTGCAC 1 cut(s) 675
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 1 cut(s) 217
AspLEI GCGC 1 cut(s) 345
AsuHPI GGTGA 1 cut(s) 463
BaeGI GKGCMC 1 cut(s) 679
Bbv12I GWGCWC 2 cut(s) 679, 771
BbvI GCAGC 1 cut(s) 106
BccI CCATC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 576
BfaI CTAG 2 cut(s) 30, 627
BfmI CTRYAG 3 cut(s) 105, 660, 758
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 781
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 2 cut(s) 409, 471
BoxI GACNNNNGTC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 789
Bse1I ACTGG 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 179
BseBI CCWGG 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 4 cut(s) 97, 145, 445, 718
BseLI CCNNNNNNNGG 1 cut(s) 789
BseMI GCAATG 1 cut(s) 179
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 128
BseSI GKGCMC 1 cut(s) 679
BseXI GCAGC 1 cut(s) 106
BsgI GTGCAG 2 cut(s) 105, 229
BsiHKAI GWGCWC 2 cut(s) 679, 771
BsiSI CCGG 1 cut(s) 783
BslI CCNNNNNNNGG 1 cut(s) 789
BsmAI GTCTC 1 cut(s) 576
Bsp1286I GDGCHC 2 cut(s) 679, 771
Bsp143I GATC 4 cut(s) 293, 601, 649, 792
BspACI CCGC 3 cut(s) 89, 154, 428
BspCNI CTCAG 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 781
BspMAI CTGCAG 1 cut(s) 109
BspPI GGATC 3 cut(s) 301, 644, 800
BsrDI GCAATG 1 cut(s) 179
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 4 cut(s) 293, 601, 649, 792
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 2 cut(s) 330, 674
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 3 cut(s) 135, 204, 435
BstF5I GGATG 4 cut(s) 97, 145, 445, 718
BstHHI GCGC 1 cut(s) 345
BstKTI GATC 4 cut(s) 296, 604, 652, 795
BstMAI GTCTC 1 cut(s) 576
BstMBI GATC 4 cut(s) 293, 601, 649, 792
BstNI CCWGG 1 cut(s) 69
BstNSI RCATGY 1 cut(s) 202
BstPAI GACNNNNGTC 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 67
BstSFI CTRYAG 3 cut(s) 105, 660, 758
BstSLI GKGCMC 1 cut(s) 679
BstV1I GCAGC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 792
BstYI RGATCY 1 cut(s) 792
BtsCI GGATG 4 cut(s) 97, 145, 445, 718
BtsIMutI CAGTG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 310
CfoI GCGC 1 cut(s) 345
Csp6I GTAC 1 cut(s) 606
CviAII CATG 1 cut(s) 199
CviJI RGCY 5 cut(s) 119, 257, 365, 665, 782
CviKI_1 RGCY 5 cut(s) 119, 257, 365, 665, 782
CviQI GTAC 1 cut(s) 606
DdeI CTNAG 3 cut(s) 135, 204, 435
DpnI GATC 4 cut(s) 295, 603, 651, 794
DpnII GATC 4 cut(s) 293, 601, 649, 792
DraI TTTAAA 2 cut(s) 252, 552
DrdI GACNNNNNNGTC 1 cut(s) 328
DseDI GACNNNNNNGTC 1 cut(s) 328
EcoRI GAATTC 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 67
EcoT22I ATGCAT 1 cut(s) 486
FaeI CATG 1 cut(s) 202
FalI AAGNNNNNCTT 4 cut(s) 108, 140, 408, 440
FatI CATG 1 cut(s) 198
FauNDI CATATG 1 cut(s) 500
FblI GTMKAC 1 cut(s) 272
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 4 cut(s) 104, 152, 452, 725
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 2 cut(s) 30, 627
GlaI GCGC 1 cut(s) 344
GluI GCNGC 1 cut(s) 120
HapII CCGG 1 cut(s) 783
HhaI GCGC 1 cut(s) 345
Hin1II CATG 1 cut(s) 202
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HinfI GANTC 3 cut(s) 64, 398, 517
HpaII CCGG 1 cut(s) 783
HphI GGTGA 1 cut(s) 463
Hpy166II GTNNAC 2 cut(s) 273, 677
Hpy188I TCNGA 9 cut(s) 19, 163, 205, 247, 288, 298, 463, 547, 601
Hpy8I GTNNAC 2 cut(s) 273, 677
HpyAV CCTTC 3 cut(s) 14, 293, 606
HpyCH4III ACNGT 2 cut(s) 330, 674
HpyF3I CTNAG 3 cut(s) 135, 204, 435
Hsp92II CATG 1 cut(s) 202
HspAI GCGC 1 cut(s) 343
Kzo9I GATC 4 cut(s) 293, 601, 649, 792
LmnI GCTCC 2 cut(s) 766, 779
LpnPI CCDG 8 cut(s) 54, 81, 141, 294, 346, 693, 785, 796
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 2 cut(s) 409, 471
MaeI CTAG 2 cut(s) 30, 627
MaeIII GTNAC 2 cut(s) 100, 130
MalI GATC 4 cut(s) 295, 603, 651, 794
MboI GATC 4 cut(s) 293, 601, 649, 792
MboII GAAGA 3 cut(s) 45, 107, 539
MflI RGATCY 1 cut(s) 792
MhlI GDGCHC 2 cut(s) 679, 771
MluCI AATT 6 cut(s) 38, 146, 217, 279, 317, 697
MmeI TCCRAC 1 cut(s) 599
MnlI CCTC 4 cut(s) 402, 447, 634, 756
Mph1103I ATGCAT 1 cut(s) 486
MseI TTAA 3 cut(s) 251, 551, 747
MspI CCGG 1 cut(s) 783
MspR9I CCNGG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 69
NdeI CATATG 1 cut(s) 500
NdeII GATC 4 cut(s) 293, 601, 649, 792
NlaIII CATG 1 cut(s) 202
NlaIV GGNNCC 1 cut(s) 781
NmuCI GTSAC 1 cut(s) 100
NsiI ATGCAT 1 cut(s) 486
NspI RCATGY 1 cut(s) 202
PciI ACATGT 1 cut(s) 198
PfeI GAWTC 3 cut(s) 64, 398, 517
PkrI GCNGC 1 cut(s) 121
PscI ACATGT 1 cut(s) 198
PshAI GACNNNNGTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 781
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 792
RsaI GTAC 1 cut(s) 607
RsaNI GTAC 1 cut(s) 606
SaqAI TTAA 3 cut(s) 251, 551, 747
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 4 cut(s) 293, 601, 649, 792
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 2 cut(s) 679, 771
SetI ASST 3 cut(s) 121, 367, 667
SfaNI GCATC 2 cut(s) 409, 471
SfcI CTRYAG 3 cut(s) 105, 660, 758
SmiI ATTTAAAT 1 cut(s) 552
Sse9I AATT 6 cut(s) 38, 146, 217, 279, 317, 697
SsiI CCGC 3 cut(s) 89, 154, 428
SspMI CTAG 2 cut(s) 30, 627
StyD4I CCNGG 1 cut(s) 67
SwaI ATTTAAAT 1 cut(s) 552
TaaI ACNGT 2 cut(s) 330, 674
TaqI TCGA 3 cut(s) 221, 479, 648
TasI AATT 6 cut(s) 38, 146, 217, 279, 317, 697
TfiI GAWTC 3 cut(s) 64, 398, 517
Tru1I TTAA 3 cut(s) 251, 551, 747
Tru9I TTAA 3 cut(s) 251, 551, 747
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 4 cut(s) 108, 230, 390, 530
TspRI CASTG 1 cut(s) 118
VneI GTGCAC 1 cut(s) 675
XapI RAATTY 1 cut(s) 217
XceI RCATGY 1 cut(s) 202
XmiI GTMKAC 1 cut(s) 272
XspI CTAG 2 cut(s) 30, 627
Zsp2I ATGCAT 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.