Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002940

Physical Location & Seq

Genomic Coordinates Forward (+)

14473150 .. 14474013

Gene Structure 864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG168400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGACTGATAATGCAGCAGAAGGGGAAGCTAGTGGTTTGGTTTCTTTACCTTCCATGAGTGAGAATACATCAGAAGGGGAAACTAGCAGTAAATTGATTTTGCAATCTTCTAATGAGAATCCAGGGGAAGTTGATGGTATAGCGGATGAAGATGTGACTGCAGTCAGTGAAGCTGCACTTCCAGTAACTAAGGATGAGAAATTGGTGCGGAAATCAGAAAATAAAGATTACTCATTGCACAAGTGTAAGCACATGTCTGAGTGCAGTATGAATTCGAGTGAAAAAGAGAAAACATCATCAGATTTAAAGGCTCATAAGTGTTTGTCTACTCCAATTTGTCAGAATGGATCAGAAGGGAAAGCAGGCAGTAAATTGACTTTACAGTCCTGTGTAAAGCGCAAGGCAGTTGATGTTATAGCTGATGACTTTGTGCTGAAACATAGGAAAAGTGATTCATCAACGAGGACTAAAGATGCACTTCCGCTAACTAAGGATGAGATGTTGGTGAGGAAATCAGAAAGTAAAAATAACTCGATGCATAAGTGCAAGAACATATGTGGAGATATGATGAATCCAAGTGAAGAACAGAAAAGTTTATCGGATTTAAATGGTGGGAAGTGTTTGTCTCCAACAAGTGAGTATGGATTTCCTTCTGATCGTACATTGACTTTGCACCCCTCTAGTAATATACGAAAGGAAGTCGATCCTATTCCTATAGCTGATGACTGTGCACTAAAAGATTGGGAAAGCAATTTATCAGCAGGGGATGTTGAGCAGTCTTTTGGAGTTGCAGATTTTATTAACTTGTTTCTACAGAGGGAGCACATTTTTGGAGCCGGAGAAAGGATCTGTCTGGTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

287

Amino Acids

31.25

Weight (kDa)

5.17

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09670 AT3G09670 AT5G02950 AT5G02950
fragaria_vesca	FvH4_6g15300 FvH4_6g15320 FvH4_6g15320
malus_domestica	MD12G1124400.v1.1
prunus_persica	Prupe.6G241400_v2.0.a1
pyrus_communis	pycom12g12280
rosa_chinensis	RchiOBHm_Chr3g0468721 RchiOBHm_Chr3g0468761 RchiOBHm_Chr3g0468791
rosa_laevigata	RLG00000024409 RLG00000024412 RLG00000024413
rosa_multiflora	Rmu_sc0001639.1_g000025 Rmu_sc0001639.1_g000031 Rmu_sc0001639.1_g000033
rosa_roxburghii	Rroxscaffold_6G00412560 Rroxscaffold_6G00412620 Rroxscaffold_6G00412630
rosa_rugosa	Rorug03G0096300 Rorug03G0096400 Rorug03G0096500
rosa_samantha	Rh3AG145400 Rh3AG145500 Rh3AG146200 Rh3BG168100 Rh3BG168300 Rh3BG168400 Rh3BG168800 Rh3DG166700 Rh3DG166800 Rh3DG167100
rosa_wichuraiana	Rw3G013710 Rw3G013720 Rw3G013750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	326
AciI	CCGC	3 cut(s)	143, 208, 482
AclWI	GGATC	3 cut(s)	355, 698, 854
AcsI	RAATTY	1 cut(s)	271
AfaI	GTAC	1 cut(s)	661
AfiI	CCNNNNNNNGG	1 cut(s)	843
AflIII	ACRYGT	1 cut(s)	252
AgsI	TTSAA	1 cut(s)	860
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	4 cut(s)	29, 173, 419, 719
AluI	AGCT	4 cut(s)	29, 173, 419, 719
Alw21I	GWGCWC	2 cut(s)	733, 825
Alw26I	GTCTC	1 cut(s)	630
Alw44I	GTGCAC	1 cut(s)	729
AlwI	GGATC	3 cut(s)	355, 698, 854
ApaLI	GTGCAC	1 cut(s)	729
ApeKI	GCWGC	2 cut(s)	14, 173
ApoI	RAATTY	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	399
AsuHPI	GGTGA	1 cut(s)	517
BaeGI	GKGCMC	1 cut(s)	733
Bbv12I	GWGCWC	2 cut(s)	733, 825
BbvI	GCAGC	2 cut(s)	26, 160
BccI	CCATC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	630
BfaI	CTAG	3 cut(s)	30, 84, 681
BfmI	CTRYAG	3 cut(s)	159, 714, 812
BisI	GCNGC	2 cut(s)	15, 174
BlsI	GCNGC	2 cut(s)	16, 175
Bme1390I	CCNGG	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	835
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	2 cut(s)	463, 525
BoxI	GACNNNNGTC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	843
Bse1I	ACTGG	1 cut(s)	182
Bse3DI	GCAATG	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	122
BseGI	GGATG	4 cut(s)	151, 199, 499, 772
BseLI	CCNNNNNNNGG	1 cut(s)	843
BseMI	GCAATG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	182
BseSI	GKGCMC	1 cut(s)	733
BseXI	GCAGC	2 cut(s)	26, 160
BsgI	GTGCAG	2 cut(s)	159, 283
BsiHKAI	GWGCWC	2 cut(s)	733, 825
BsiSI	CCGG	1 cut(s)	837
BslI	CCNNNNNNNGG	1 cut(s)	843
BsmAI	GTCTC	1 cut(s)	630
Bsp1286I	GDGCHC	2 cut(s)	733, 825
Bsp143I	GATC	4 cut(s)	347, 655, 703, 846
BspACI	CCGC	3 cut(s)	143, 208, 482
BspCNI	CTCAG	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	835
BspMAI	CTGCAG	1 cut(s)	163
BspPI	GGATC	3 cut(s)	355, 698, 854
BsrDI	GCAATG	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	4 cut(s)	347, 655, 703, 846
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	384, 728
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	3 cut(s)	189, 258, 489
BstF5I	GGATG	4 cut(s)	151, 199, 499, 772
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	4 cut(s)	350, 658, 706, 849
BstMAI	GTCTC	1 cut(s)	630
BstMBI	GATC	4 cut(s)	347, 655, 703, 846
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	1 cut(s)	256
BstPAI	GACNNNNGTC	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	3 cut(s)	159, 714, 812
BstSLI	GKGCMC	1 cut(s)	733
BstV1I	GCAGC	2 cut(s)	26, 160
BstX2I	RGATCY	1 cut(s)	846
BstYI	RGATCY	1 cut(s)	846
BtsCI	GGATG	4 cut(s)	151, 199, 499, 772
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	364
CfoI	GCGC	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	660
CviAII	CATG	2 cut(s)	55, 253
CviJI	RGCY	6 cut(s)	29, 173, 311, 419, 719, 836
CviKI_1	RGCY	6 cut(s)	29, 173, 311, 419, 719, 836
CviQI	GTAC	1 cut(s)	660
DdeI	CTNAG	3 cut(s)	189, 258, 489
DpnI	GATC	4 cut(s)	349, 657, 705, 848
DpnII	GATC	4 cut(s)	347, 655, 703, 846
DraI	TTTAAA	2 cut(s)	306, 606
DrdI	GACNNNNNNGTC	1 cut(s)	382
DseDI	GACNNNNNNGTC	1 cut(s)	382
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	121
EcoT22I	ATGCAT	1 cut(s)	540
FaeI	CATG	2 cut(s)	58, 256
FalI	AAGNNNNNCTT	4 cut(s)	162, 194, 462, 494
FatI	CATG	2 cut(s)	54, 252
FauNDI	CATATG	1 cut(s)	554
FblI	GTMKAC	1 cut(s)	326
Fnu4HI	GCNGC	2 cut(s)	15, 174
FokI	GGATG	4 cut(s)	158, 206, 506, 779
Fsp4HI	GCNGC	2 cut(s)	15, 174
FspBI	CTAG	3 cut(s)	30, 84, 681
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	2 cut(s)	15, 174
HapII	CCGG	1 cut(s)	837
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	2 cut(s)	58, 256
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HinfI	GANTC	3 cut(s)	118, 452, 571
HpaII	CCGG	1 cut(s)	837
HphI	GGTGA	1 cut(s)	517
Hpy166II	GTNNAC	2 cut(s)	327, 731
Hpy188I	TCNGA	9 cut(s)	73, 217, 259, 301, 342, 352, 517, 601, 655
Hpy8I	GTNNAC	2 cut(s)	327, 731
HpyAV	CCTTC	5 cut(s)	14, 60, 68, 347, 660
HpyCH4III	ACNGT	2 cut(s)	384, 728
HpyF3I	CTNAG	3 cut(s)	189, 258, 489
Hsp92II	CATG	2 cut(s)	58, 256
HspAI	GCGC	1 cut(s)	397
Kzo9I	GATC	4 cut(s)	347, 655, 703, 846
LmnI	GCTCC	2 cut(s)	820, 833
LpnPI	CCDG	8 cut(s)	108, 135, 195, 348, 400, 747, 839, 850
Lsp1109I	GCAGC	2 cut(s)	26, 160
LweI	GCATC	2 cut(s)	463, 525
MaeI	CTAG	3 cut(s)	30, 84, 681
MaeIII	GTNAC	2 cut(s)	154, 184
MalI	GATC	4 cut(s)	349, 657, 705, 848
MboI	GATC	4 cut(s)	347, 655, 703, 846
MboII	GAAGA	3 cut(s)	99, 161, 593
MflI	RGATCY	1 cut(s)	846
MhlI	GDGCHC	2 cut(s)	733, 825
MluCI	AATT	6 cut(s)	92, 200, 271, 333, 371, 751
MmeI	TCCRAC	1 cut(s)	653
MnlI	CCTC	4 cut(s)	456, 501, 688, 810
Mph1103I	ATGCAT	1 cut(s)	540
MseI	TTAA	3 cut(s)	305, 605, 801
MspI	CCGG	1 cut(s)	837
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
NdeI	CATATG	1 cut(s)	554
NdeII	GATC	4 cut(s)	347, 655, 703, 846
NlaIII	CATG	2 cut(s)	58, 256
NlaIV	GGNNCC	1 cut(s)	835
NmuCI	GTSAC	1 cut(s)	154
NsiI	ATGCAT	1 cut(s)	540
NspI	RCATGY	1 cut(s)	256
PciI	ACATGT	1 cut(s)	252
PfeI	GAWTC	3 cut(s)	118, 452, 571
PkrI	GCNGC	2 cut(s)	16, 175
PscI	ACATGT	1 cut(s)	252
PshAI	GACNNNNGTC	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	835
PstI	CTGCAG	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	846
RsaI	GTAC	1 cut(s)	661
RsaNI	GTAC	1 cut(s)	660
SaqAI	TTAA	3 cut(s)	305, 605, 801
SatI	GCNGC	2 cut(s)	15, 174
Sau3AI	GATC	4 cut(s)	347, 655, 703, 846
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	2 cut(s)	733, 825
SetI	ASST	5 cut(s)	31, 52, 175, 421, 721
SfaNI	GCATC	2 cut(s)	463, 525
SfcI	CTRYAG	3 cut(s)	159, 714, 812
SmiI	ATTTAAAT	1 cut(s)	606
Sse9I	AATT	6 cut(s)	92, 200, 271, 333, 371, 751
SsiI	CCGC	3 cut(s)	143, 208, 482
SspMI	CTAG	3 cut(s)	30, 84, 681
StyD4I	CCNGG	1 cut(s)	121
SwaI	ATTTAAAT	1 cut(s)	606
TaaI	ACNGT	2 cut(s)	384, 728
TaqI	TCGA	3 cut(s)	275, 533, 702
TasI	AATT	6 cut(s)	92, 200, 271, 333, 371, 751
TfiI	GAWTC	3 cut(s)	118, 452, 571
Tru1I	TTAA	3 cut(s)	305, 605, 801
Tru9I	TTAA	3 cut(s)	305, 605, 801
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	2 cut(s)	14, 173
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	4 cut(s)	162, 284, 444, 584
TspRI	CASTG	1 cut(s)	172
VneI	GTGCAC	1 cut(s)	729
XapI	RAATTY	1 cut(s)	271
XceI	RCATGY	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	326
XspI	CTAG	3 cut(s)	30, 84, 681
Zsp2I	ATGCAT	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.