Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Reverse (-)

4305106 .. 4307570

Gene Structure 2465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCTGCGTGTAGCAGGGAGGAGGCTTTTCTCTGTCTCGCAGAGATCTTCGACTGCGACCTCCTTCGTCGTCTCCCGTGACCATACCCTTTCCGATGGTGGCGGCGACTCCTCTTCAGCTCCCAGATCCCTCCCCTCTGCAGATCTCTCATCTTACCACCGTAGCCTTATCAGAGGCTTCTCTTCTCAAGTCCTTGCTCAAGGAAATGAGATAGGTTTTGGTTCAGAAGTCCCAGCCACAGTCGAAGCTGTCAAAACGCCTAACTCAAAGATTGTCTATGATGACCATAACCATGAGCGTTACCCACCTGGTGACCCTAGCAAGCGTGCATTCGCCTATTTTGTCTTGTCGGGTGGGAGGTTTGTTTATGCCTCTGTCCTCCGCCTGCTTGTTTTGAAGCTTATTGTGAGCATGTCTGCAAGTAAAGATGTCCTTGCCCTTGCATCCCTTGAGGTTGACCTAGGGAGCATAGAACCAGGAACTACCGTGACAGTCAAGTGGCGTGGAAAGCCCGTCTTCATCAGGCGAAGAACAGAAGATGACATCAAGCTGGCCAATAGTGTGGATGTTGGATCCCTGAGGGACCCACAAGAAGACTCGGTTAGGGTCAAGAATCCAGAATGGTTAGTGGTTGTTGGAGTGTGCACTCATTTGGGGTGCATCCCCTTGCCTAATGCTGGTGATTATGGTGGTTGGTTTTGTCCGTGTCACGGATCACATTACGATATATCTGGAAGAATTAGGAAAGGTCCTGCACCATACAACCTGGAAGTACCAACCTACAGCTTCCTGGAAGAGAATAAGTTACTCATCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0006091 GO:0006950 GO:0008121 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016679 GO:0016681 GO:0019866 GO:0022900 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046872 GO:0050896 GO:0055114 GO:0070069 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

272

Amino Acids

29.61

Weight (kDa)

8.63

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_TM	PF02921	104 - 143	8.4e-08	Ubiquinol cytochrome reductase transmembrane region
Rieske	PF00355	201 - 257	4.8e-09	Rieske [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	102, 382
AclWI	GGATC	4 cut(s)	120, 567, 580, 721
AcoI	YGGCCR	1 cut(s)	552
AcuI	CTGAAG	1 cut(s)	99
AdeI	CACNNNGTG	1 cut(s)	311
AfaI	GTAC	1 cut(s)	774
AfiI	CCNNNNNNNGG	2 cut(s)	677, 710
AgsI	TTSAA	1 cut(s)	397
AjnI	CCWGG	4 cut(s)	307, 475, 765, 789
AluBI	AGCT	5 cut(s)	119, 248, 400, 550, 786
AluI	AGCT	5 cut(s)	119, 248, 400, 550, 786
Alw21I	GWGCWC	1 cut(s)	647
Alw26I	GTCTC	2 cut(s)	40, 76
Alw44I	GTGCAC	1 cut(s)	643
AlwI	GGATC	4 cut(s)	120, 567, 580, 721
AoxI	GGCC	1 cut(s)	552
ApaLI	GTGCAC	1 cut(s)	643
ApeKI	GCWGC	1 cut(s)	4
AspA2I	CCTAGG	1 cut(s)	460
AspS9I	GGNCC	2 cut(s)	583, 749
AsuHPI	GGTGA	2 cut(s)	323, 692
AvaII	GGWCC	2 cut(s)	583, 749
AvrII	CCTAGG	1 cut(s)	460
AxyI	CCTNAGG	1 cut(s)	578
BaeGI	GKGCMC	1 cut(s)	647
BalI	TGGCCA	1 cut(s)	554
BamHI	GGATCC	1 cut(s)	572
BbsI	GAAGAC	2 cut(s)	508, 600
Bbv12I	GWGCWC	1 cut(s)	647
BccI	CCATC	1 cut(s)	89
BciT130I	CCWGG	4 cut(s)	309, 477, 767, 791
BcoDI	GTCTC	2 cut(s)	40, 76
BfaI	CTAG	2 cut(s)	318, 461
BfmI	CTRYAG	2 cut(s)	138, 781
BglII	AGATCT	2 cut(s)	44, 142
BisI	GCNGC	2 cut(s)	5, 103
BlnI	CCTAGG	1 cut(s)	460
BlsI	GCNGC	2 cut(s)	6, 104
Bme1390I	CCNGG	4 cut(s)	309, 477, 767, 791
Bme18I	GGWCC	2 cut(s)	583, 749
BmgT120I	GGNCC	2 cut(s)	583, 749
BmiI	GGNNCC	3 cut(s)	574, 584, 585
BmrFI	CCNGG	4 cut(s)	309, 477, 767, 791
BmsI	GCATC	2 cut(s)	452, 669
BpiI	GAAGAC	2 cut(s)	508, 600
BpuEI	CTTGAG	3 cut(s)	171, 183, 470
BsaJI	CCNNGG	1 cut(s)	460
Bsc4I	CCNNNNNNNGG	2 cut(s)	677, 710
Bse21I	CCTNAGG	1 cut(s)	578
BseBI	CCWGG	4 cut(s)	309, 477, 767, 791
BseDI	CCNNGG	1 cut(s)	460
BseGI	GGATG	3 cut(s)	443, 571, 660
BseLI	CCNNNNNNNGG	2 cut(s)	677, 710
BseMII	CTCAG	1 cut(s)	569
BseRI	GAGGAG	2 cut(s)	34, 100
BseSI	GKGCMC	1 cut(s)	647
BseYI	CCCAGC	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	738
BshFI	GGCC	1 cut(s)	554
BsiHKAI	GWGCWC	1 cut(s)	647
BslFI	GGGAC	2 cut(s)	215, 596
BslI	CCNNNNNNNGG	2 cut(s)	677, 710
BsmAI	GTCTC	2 cut(s)	40, 76
BsmBI	CGTCTC	1 cut(s)	76
BsmFI	GGGAC	2 cut(s)	215, 596
BsmI	GAATGC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	554
Bsp1286I	GDGCHC	1 cut(s)	647
Bsp143I	GATC	5 cut(s)	44, 125, 142, 572, 713
BspACI	CCGC	2 cut(s)	102, 382
BspANI	GGCC	1 cut(s)	554
BspCNI	CTCAG	1 cut(s)	570
BspLI	GGNNCC	3 cut(s)	574, 584, 585
BspMAI	CTGCAG	1 cut(s)	142
BspPI	GGATC	4 cut(s)	120, 567, 580, 721
BssECI	CCNNGG	1 cut(s)	460
BssMI	GATC	5 cut(s)	44, 125, 142, 572, 713
BssT1I	CCWWGG	1 cut(s)	460
Bst2UI	CCWGG	4 cut(s)	309, 477, 767, 791
Bst4CI	ACNGT	4 cut(s)	161, 241, 487, 493
Bst6I	CTCTTC	3 cut(s)	118, 187, 789
BstC8I	GCNNGC	4 cut(s)	323, 327, 386, 552
BstDEI	CTNAG	1 cut(s)	578
BstEII	GGTNACC	1 cut(s)	311
BstF5I	GGATG	3 cut(s)	443, 571, 660
BstKTI	GATC	5 cut(s)	47, 128, 145, 575, 716
BstMAI	GTCTC	2 cut(s)	40, 76
BstMBI	GATC	5 cut(s)	44, 125, 142, 572, 713
BstMWI	GCNNNNNNNGC	1 cut(s)	508
BstNI	CCWGG	4 cut(s)	309, 477, 767, 791
BstNSI	RCATGY	1 cut(s)	415
BstPI	GGTNACC	1 cut(s)	311
BstSCI	CCNGG	4 cut(s)	307, 475, 765, 789
BstSFI	CTRYAG	2 cut(s)	138, 781
BstSLI	GKGCMC	1 cut(s)	647
BstV2I	GAAGAC	2 cut(s)	508, 600
BstX2I	RGATCY	4 cut(s)	44, 125, 142, 572
BstXI	CCANNNNNNTGG	1 cut(s)	562
BstYI	RGATCY	4 cut(s)	44, 125, 142, 572
Bsu36I	CCTNAGG	1 cut(s)	578
BsuRI	GGCC	1 cut(s)	554
BtsCI	GGATG	3 cut(s)	443, 571, 660
Cac8I	GCNNGC	4 cut(s)	323, 327, 386, 552
Cfr13I	GGNCC	2 cut(s)	583, 749
CsiI	ACCWGGT	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	773
CspCI	CAANNNNNGTGG	2 cut(s)	484, 519
CviAII	CATG	2 cut(s)	293, 412
CviQI	GTAC	1 cut(s)	773
DdeI	CTNAG	1 cut(s)	578
DpnI	GATC	5 cut(s)	46, 127, 144, 574, 715
DpnII	GATC	5 cut(s)	44, 125, 142, 572, 713
DraIII	CACNNNGTG	1 cut(s)	311
EaeI	YGGCCR	1 cut(s)	552
Eam1104I	CTCTTC	3 cut(s)	118, 187, 789
EarI	CTCTTC	3 cut(s)	118, 187, 789
EciI	GGCGGA	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	460
Eco47I	GGWCC	2 cut(s)	583, 749
Eco57I	CTGAAG	1 cut(s)	99
Eco81I	CCTNAGG	1 cut(s)	578
Eco91I	GGTNACC	1 cut(s)	311
EcoO109I	RGGNCCY	2 cut(s)	583, 749
EcoO65I	GGTNACC	1 cut(s)	311
EcoRII	CCWGG	4 cut(s)	307, 475, 765, 789
EcoT14I	CCWWGG	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	460
Esp3I	CGTCTC	1 cut(s)	76
FaeI	CATG	2 cut(s)	296, 415
FalI	AAGNNNNNCTT	4 cut(s)	417, 449, 500, 532
FaqI	GGGAC	2 cut(s)	215, 596
FatI	CATG	2 cut(s)	292, 411
Fnu4HI	GCNGC	2 cut(s)	5, 103
FokI	GGATG	3 cut(s)	430, 578, 647
Fsp4HI	GCNGC	2 cut(s)	5, 103
FspBI	CTAG	2 cut(s)	318, 461
GluI	GCNGC	2 cut(s)	5, 103
GsaI	CCCAGC	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	554
Hin1II	CATG	2 cut(s)	296, 415
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	3 cut(s)	107, 596, 613
HphI	GGTGA	2 cut(s)	323, 692
Hpy166II	GTNNAC	2 cut(s)	457, 645
Hpy188I	TCNGA	3 cut(s)	94, 173, 226
Hpy188III	TCNNGA	3 cut(s)	610, 617, 732
Hpy8I	GTNNAC	2 cut(s)	457, 645
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	4 cut(s)	161, 241, 487, 493
HpyCH4V	TGCA	7 cut(s)	140, 329, 419, 443, 645, 660, 755
HpyF10VI	GCNNNNNNNGC	1 cut(s)	508
HpyF3I	CTNAG	1 cut(s)	578
Hsp92II	CATG	2 cut(s)	296, 415
KflI	GGGWCCC	1 cut(s)	583
Kzo9I	GATC	5 cut(s)	44, 125, 142, 572, 713
LmnI	GCTCC	2 cut(s)	124, 465
LweI	GCATC	2 cut(s)	452, 669
MabI	ACCWGGT	1 cut(s)	307
MaeI	CTAG	2 cut(s)	318, 461
MaeIII	GTNAC	6 cut(s)	77, 299, 311, 487, 707, 804
MalI	GATC	5 cut(s)	46, 127, 144, 574, 715
MboI	GATC	5 cut(s)	44, 125, 142, 572, 713
MboII	GAAGA	9 cut(s)	39, 105, 174, 508, 540, 548, 605, 747, 806
MflI	RGATCY	4 cut(s)	44, 125, 142, 572
MhlI	GDGCHC	1 cut(s)	647
MlsI	TGGCCA	1 cut(s)	554
MluCI	AATT	1 cut(s)	738
MluNI	TGGCCA	1 cut(s)	554
MlyI	GAGTC	2 cut(s)	101, 590
MmeI	TCCRAC	2 cut(s)	550, 616
Mox20I	TGGCCA	1 cut(s)	554
MscI	TGGCCA	1 cut(s)	554
MslI	CAYNNNNRTG	1 cut(s)	291
Msp20I	TGGCCA	1 cut(s)	554
MspR9I	CCNGG	4 cut(s)	309, 477, 767, 791
Mva1269I	GAATGC	1 cut(s)	329
MvaI	CCWGG	4 cut(s)	309, 477, 767, 791
MwoI	GCNNNNNNNGC	1 cut(s)	508
NdeII	GATC	5 cut(s)	44, 125, 142, 572, 713
NlaIII	CATG	2 cut(s)	296, 415
NlaIV	GGNNCC	3 cut(s)	574, 584, 585
NmuCI	GTSAC	4 cut(s)	77, 311, 487, 707
NspI	RCATGY	1 cut(s)	415
PctI	GAATGC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	613
PfoI	TCCNGGA	1 cut(s)	789
PkrI	GCNGC	2 cut(s)	6, 104
PleI	GAGTC	2 cut(s)	101, 590
PpsI	GAGTC	2 cut(s)	101, 590
PpuMI	RGGWCCY	2 cut(s)	583, 749
Psp5II	RGGWCCY	2 cut(s)	583, 749
Psp6I	CCWGG	4 cut(s)	307, 475, 765, 789
PspEI	GGTNACC	1 cut(s)	311
PspFI	CCCAGC	1 cut(s)	232
PspGI	CCWGG	4 cut(s)	307, 475, 765, 789
PspN4I	GGNNCC	3 cut(s)	574, 584, 585
PspPI	GGNCC	2 cut(s)	583, 749
PspPPI	RGGWCCY	2 cut(s)	583, 749
PstI	CTGCAG	1 cut(s)	142
PsuI	RGATCY	4 cut(s)	44, 125, 142, 572
RsaI	GTAC	1 cut(s)	774
RsaNI	GTAC	1 cut(s)	773
RseI	CAYNNNNRTG	1 cut(s)	291
SatI	GCNGC	2 cut(s)	5, 103
Sau3AI	GATC	5 cut(s)	44, 125, 142, 572, 713
Sau96I	GGNCC	2 cut(s)	583, 749
SchI	GAGTC	2 cut(s)	101, 590
ScrFI	CCNGG	4 cut(s)	309, 477, 767, 791
SduI	GDGCHC	1 cut(s)	647
SexAI	ACCWGGT	1 cut(s)	307
SfaNI	GCATC	2 cut(s)	452, 669
SfcI	CTRYAG	2 cut(s)	138, 781
SinI	GGWCC	2 cut(s)	583, 749
SmiMI	CAYNNNNRTG	1 cut(s)	291
SmlI	CTYRAG	3 cut(s)	186, 198, 449
SmoI	CTYRAG	3 cut(s)	186, 198, 449
Sse9I	AATT	1 cut(s)	738
SsiI	CCGC	2 cut(s)	102, 382
SspMI	CTAG	2 cut(s)	318, 461
StyD4I	CCNGG	4 cut(s)	307, 475, 765, 789
StyI	CCWWGG	1 cut(s)	460
TaaI	ACNGT	4 cut(s)	161, 241, 487, 493
TaqI	TCGA	2 cut(s)	50, 243
TasI	AATT	1 cut(s)	738
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	613
TseFI	GTSAC	4 cut(s)	77, 311, 487, 707
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	4 cut(s)	77, 311, 487, 707
TspDTI	ATGAA	1 cut(s)	508
TspGWI	ACGGA	2 cut(s)	693, 726
VneI	GTGCAC	1 cut(s)	643
VpaK11BI	GGWCC	2 cut(s)	583, 749
XceI	RCATGY	1 cut(s)	415
XmaJI	CCTAGG	1 cut(s)	460
XspI	CTAG	2 cut(s)	318, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.