Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Reverse (-)

5375790 .. 5376083

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1033200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGCTGAGAGTCGCGGGAAGAAGGTTGTCATCTTTTGCTGCGGTGTGGCGGTCGTCGTTGTATACCACCCCCGCTTTCGTCTCCGGAGGATCTCATCCGCTTTTCATTACCAACAACAGTGACGACGACTATTCCTCCGATTTCGCTTCCAAATCCCCCGCTCACTTTTTCCTGAATTCCAAAATTCCATCTCTCGTCAGAGGATTTTCCTCTGAAGCCCTCGCTCCCGGAAATGATATTGGTATTTTCTCAGACATCCCACCTACTGTGGCAGCTGTGAAGAATCCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0006091 GO:0006950 GO:0008121 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016679 GO:0016681 GO:0019866 GO:0022900 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046872 GO:0050896 GO:0055114 GO:0070069 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

98

Amino Acids

10.34

Weight (kDa)

8.18

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	62
AccII	CGCG	1 cut(s)	14
AccIII	TCCGGA	1 cut(s)	83
AciI	CCGC	6 cut(s)	14, 41, 49, 72, 98, 159
AclWI	GGATC	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	175, 183
AcuI	CTGAAG	1 cut(s)	234
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	1 cut(s)	97
Aor13HI	TCCGGA	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	38, 272
ApoI	RAATTY	2 cut(s)	175, 183
AsuC2I	CCSGG	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	25, 284
BccI	CCATC	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	85
BisI	GCNGC	2 cut(s)	39, 273
BlsI	GCNGC	2 cut(s)	40, 274
Bme1390I	CCNGG	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
BseAI	TCCGGA	1 cut(s)	83
BseGI	GGATG	2 cut(s)	94, 255
BseMII	CTCAG	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	25, 284
Bsh1236I	CGCG	1 cut(s)	14
Bsh1285I	CGRYCG	1 cut(s)	53
BsiEI	CGRYCG	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	84, 228
BsmAI	GTCTC	1 cut(s)	85
BsmBI	CGTCTC	1 cut(s)	85
Bsp13I	TCCGGA	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	6 cut(s)	14, 41, 49, 72, 98, 159
BspCNI	CTCAG	1 cut(s)	263
BspEI	TCCGGA	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	14
BspPI	GGATC	1 cut(s)	97
BsrBI	CCGCTC	1 cut(s)	161
BssMI	GATC	1 cut(s)	89
BssNAI	GTATAC	1 cut(s)	63
Bst1107I	GTATAC	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	119, 268
BstDEI	CTNAG	2 cut(s)	5, 250
BstF5I	GGATG	2 cut(s)	94, 255
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	1 cut(s)	92
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	89
BstMCI	CGRYCG	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	25, 284
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BstZ17I	GTATAC	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	94, 255
BtsIMutI	CAGTG	1 cut(s)	124
CviJI	RGCY	2 cut(s)	218, 275
CviKI_1	RGCY	2 cut(s)	218, 275
DdeI	CTNAG	2 cut(s)	5, 250
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	175
Esp3I	CGTCTC	1 cut(s)	85
FaiI	YATR	1 cut(s)	63
FauI	CCCGC	3 cut(s)	7, 79, 166
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	2 cut(s)	39, 273
FokI	GGATG	2 cut(s)	81, 242
Fsp4HI	GCNGC	2 cut(s)	39, 273
GluI	GCNGC	2 cut(s)	39, 273
HapII	CCGG	2 cut(s)	84, 228
HinfI	GANTC	2 cut(s)	9, 283
HpaII	CCGG	2 cut(s)	84, 228
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	4 cut(s)	139, 200, 214, 253
Hpy188III	TCNNGA	2 cut(s)	84, 172
Hpy8I	GTNNAC	1 cut(s)	63
Hpy99I	CGWCG	2 cut(s)	58, 128
HpyAV	CCTTC	1 cut(s)	15
HpyCH4III	ACNGT	2 cut(s)	119, 268
HpyF3I	CTNAG	2 cut(s)	5, 250
Kpn2I	TCCGGA	1 cut(s)	83
Kzo9I	GATC	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	3 cut(s)	97, 185, 241
Lsp1109I	GCAGC	2 cut(s)	25, 284
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	91
MbiI	CCGCTC	1 cut(s)	161
MboI	GATC	1 cut(s)	89
MboII	GAAGA	2 cut(s)	30, 292
MflI	RGATCY	1 cut(s)	89
MluCI	AATT	2 cut(s)	175, 183
MlyI	GAGTC	1 cut(s)	18
MnlI	CCTC	5 cut(s)	80, 145, 194, 220, 230
MroI	TCCGGA	1 cut(s)	83
MseI	TTAA	1 cut(s)	292
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	2 cut(s)	84, 228
MspR9I	CCNGG	1 cut(s)	228
MvnI	CGCG	1 cut(s)	14
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	1 cut(s)	89
NmuCI	GTSAC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	283
PfoI	TCCNGGA	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	40, 274
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	89
PvuII	CAGCTG	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	292
SatI	GCNGC	2 cut(s)	39, 273
Sau3AI	GATC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	228
SetI	ASST	3 cut(s)	26, 265, 277
Sse9I	AATT	2 cut(s)	175, 183
SsiI	CCGC	6 cut(s)	14, 41, 49, 72, 98, 159
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	119, 268
TasI	AATT	2 cut(s)	175, 183
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	1 cut(s)	292
Tru9I	TTAA	1 cut(s)	292
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	2 cut(s)	38, 272
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	124
XapI	RAATTY	2 cut(s)	175, 183
XmiI	GTMKAC	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.