Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Reverse (-)

4307973 .. 4310273

Gene Structure 2301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGCTGCGAGTAGCAGGAAGGAGGCTTTTTTCTGTTTCGCAGAGATCATCGACGGCGACCTCCTTCGTCCTTTCCCGTGACCATACCCTTTCCGATGGAGGCAACTCCTCTTCCGCTTCTAGATCTGTCCCCTCTGCAGATCTCTCATCTTTCAATTCTTACCACCGGAGCGTTATAAGAGGTTTTGCTTCTCAAGTCATTACTCAGGGAAATGAGATAGGTTTTGGTTCGGAAGTCCCAGCCACAGTCGAAGCTGTCAAAACACCTAACTCAAAGATTGTCTATGACGACCATAACCATGAGCGTTACCCACCTGGTGACCCTAGCAAGCGGGCATTCGCCTATTTTGTCTTGTCGGGTGGAAGGTTTGTTTATGCCTCTGTTCTCCGCCTGCTTGTTCTGAAGCTTATTGTGAGCATGTCTGCAAGTAAAGATGTCCTTGCCCTTGCATCCCTCGAGGTTGACCTAGGGAGCATAGAACCAGGAACTACCGTGACAGTCAAGTGGCGTGGAAAGCCCGTCTTCATCAGGCGAAGAACAGAAGATGACATCAAGCTGGCCAATAGTGTGGATGTTGGATCCCTGAGGGACCCACAAGAAGACTCGGTTAGAGTCAAGAATCCAGAATGGTTGATCGTGGTTGGAGTATGCACTCATTTGGGGTGCATCCCCTTGCCTAATGCTGGTGATTATGGTGGTTGGTTTTGTCCGTGTCACGGATCACATTACGATATATCTGGAAGAATTAGGAAAGGTCCTGCACCATACAACCTGGAAGTACCGACCTACAGCTTCTTGGAAGAGAATAAATTACTCATTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0006091 GO:0006950 GO:0008121 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016679 GO:0016681 GO:0019866 GO:0022900 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046872 GO:0050896 GO:0055114 GO:0070069 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

274

Amino Acids

29.9

Weight (kDa)

8.86

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_TM	PF02921	106 - 145	8.5e-08	Ubiquinol cytochrome reductase transmembrane region
Rieske	PF00355	204 - 259	1.7e-08	Rieske [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	176
AbsI	CCTCGAGG	1 cut(s)	455
AciI	CCGC	3 cut(s)	114, 331, 388
AclWI	GGATC	3 cut(s)	573, 586, 727
AcoI	YGGCCR	1 cut(s)	558
AcuI	CTGAAG	1 cut(s)	422
AdeI	CACNNNGTG	1 cut(s)	317
AfaI	GTAC	1 cut(s)	780
AfiI	CCNNNNNNNGG	2 cut(s)	683, 716
AgsI	TTSAA	1 cut(s)	154
AjnI	CCWGG	3 cut(s)	313, 481, 771
AluBI	AGCT	4 cut(s)	254, 406, 556, 792
AluI	AGCT	4 cut(s)	254, 406, 556, 792
AlwI	GGATC	3 cut(s)	573, 586, 727
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	1 cut(s)	558
ApeKI	GCWGC	1 cut(s)	4
AspA2I	CCTAGG	1 cut(s)	466
AspS9I	GGNCC	2 cut(s)	589, 755
AsuHPI	GGTGA	2 cut(s)	329, 698
AvaI	CYCGRG	1 cut(s)	455
AvaII	GGWCC	2 cut(s)	589, 755
AvrII	CCTAGG	1 cut(s)	466
AxyI	CCTNAGG	1 cut(s)	584
BalI	TGGCCA	1 cut(s)	560
BamHI	GGATCC	1 cut(s)	578
BbsI	GAAGAC	2 cut(s)	514, 606
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	3 cut(s)	315, 483, 773
BfaI	CTAG	3 cut(s)	120, 324, 467
BfmI	CTRYAG	2 cut(s)	135, 787
BglII	AGATCT	2 cut(s)	122, 139
BisI	GCNGC	1 cut(s)	5
BlnI	CCTAGG	1 cut(s)	466
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	3 cut(s)	315, 483, 773
Bme18I	GGWCC	2 cut(s)	589, 755
BmeT110I	CYCGRG	1 cut(s)	455
BmgT120I	GGNCC	2 cut(s)	589, 755
BmiI	GGNNCC	3 cut(s)	580, 590, 591
BmrFI	CCNGG	3 cut(s)	315, 483, 773
BmsI	GCATC	2 cut(s)	458, 675
BpiI	GAAGAC	2 cut(s)	514, 606
BpuEI	CTTGAG	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	466
BsaWI	WCCGGW	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	2 cut(s)	683, 716
Bse21I	CCTNAGG	1 cut(s)	584
BseBI	CCWGG	3 cut(s)	315, 483, 773
BseDI	CCNNGG	1 cut(s)	466
BseGI	GGATG	3 cut(s)	449, 577, 666
BseLI	CCNNNNNNNGG	2 cut(s)	683, 716
BseMII	CTCAG	2 cut(s)	218, 575
BseRI	GAGGAG	1 cut(s)	97
BseYI	CCCAGC	1 cut(s)	238
BsgI	GTGCAG	1 cut(s)	744
BshFI	GGCC	1 cut(s)	560
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	1 cut(s)	166
BslFI	GGGAC	3 cut(s)	113, 221, 602
BslI	CCNNNNNNNGG	2 cut(s)	683, 716
BsmFI	GGGAC	3 cut(s)	113, 221, 602
BsmI	GAATGC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	560
BsoBI	CYCGRG	1 cut(s)	455
Bsp143I	GATC	6 cut(s)	44, 122, 139, 578, 633, 719
BspACI	CCGC	3 cut(s)	114, 331, 388
BspANI	GGCC	1 cut(s)	560
BspCNI	CTCAG	2 cut(s)	217, 576
BspLI	GGNNCC	3 cut(s)	580, 590, 591
BspMAI	CTGCAG	1 cut(s)	139
BspPI	GGATC	3 cut(s)	573, 586, 727
BssECI	CCNNGG	1 cut(s)	466
BssMI	GATC	6 cut(s)	44, 122, 139, 578, 633, 719
BssT1I	CCWWGG	1 cut(s)	466
Bst2UI	CCWGG	3 cut(s)	315, 483, 773
Bst4CI	ACNGT	3 cut(s)	247, 493, 499
Bst6I	CTCTTC	2 cut(s)	115, 795
BstC8I	GCNNGC	4 cut(s)	329, 333, 392, 558
BstDEI	CTNAG	2 cut(s)	204, 584
BstEII	GGTNACC	1 cut(s)	317
BstF5I	GGATG	3 cut(s)	449, 577, 666
BstKTI	GATC	6 cut(s)	47, 125, 142, 581, 636, 722
BstMBI	GATC	6 cut(s)	44, 122, 139, 578, 633, 719
BstMWI	GCNNNNNNNGC	1 cut(s)	514
BstNI	CCWGG	3 cut(s)	315, 483, 773
BstNSI	RCATGY	1 cut(s)	421
BstPI	GGTNACC	1 cut(s)	317
BstSCI	CCNGG	3 cut(s)	313, 481, 771
BstSFI	CTRYAG	2 cut(s)	135, 787
BstV2I	GAAGAC	2 cut(s)	514, 606
BstX2I	RGATCY	3 cut(s)	122, 139, 578
BstXI	CCANNNNNNTGG	1 cut(s)	568
BstYI	RGATCY	3 cut(s)	122, 139, 578
Bsu36I	CCTNAGG	1 cut(s)	584
BsuRI	GGCC	1 cut(s)	560
BtsCI	GGATG	3 cut(s)	449, 577, 666
Cac8I	GCNNGC	4 cut(s)	329, 333, 392, 558
Cfr13I	GGNCC	2 cut(s)	589, 755
CsiI	ACCWGGT	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	779
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	2 cut(s)	299, 418
CviJI	RGCY	8 cut(s)	25, 242, 254, 406, 517, 556, 560, 792
CviKI_1	RGCY	8 cut(s)	25, 242, 254, 406, 517, 556, 560, 792
CviQI	GTAC	1 cut(s)	779
DdeI	CTNAG	2 cut(s)	204, 584
DpnI	GATC	6 cut(s)	46, 124, 141, 580, 635, 721
DpnII	GATC	6 cut(s)	44, 122, 139, 578, 633, 719
DraIII	CACNNNGTG	1 cut(s)	317
EaeI	YGGCCR	1 cut(s)	558
Eam1104I	CTCTTC	2 cut(s)	115, 795
EarI	CTCTTC	2 cut(s)	115, 795
EciI	GGCGGA	1 cut(s)	377
Eco130I	CCWWGG	1 cut(s)	466
Eco47I	GGWCC	2 cut(s)	589, 755
Eco57I	CTGAAG	1 cut(s)	422
Eco81I	CCTNAGG	1 cut(s)	584
Eco88I	CYCGRG	1 cut(s)	455
Eco91I	GGTNACC	1 cut(s)	317
EcoO109I	RGGNCCY	2 cut(s)	589, 755
EcoO65I	GGTNACC	1 cut(s)	317
EcoRII	CCWGG	3 cut(s)	313, 481, 771
EcoT14I	CCWWGG	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	466
FaeI	CATG	2 cut(s)	302, 421
FalI	AAGNNNNNCTT	4 cut(s)	423, 455, 506, 538
FaqI	GGGAC	3 cut(s)	113, 221, 602
FatI	CATG	2 cut(s)	298, 417
FauI	CCCGC	1 cut(s)	324
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	3 cut(s)	436, 584, 653
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	3 cut(s)	120, 324, 467
GluI	GCNGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	560
HapII	CCGG	1 cut(s)	166
Hin1II	CATG	2 cut(s)	302, 421
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	3 cut(s)	602, 612, 619
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	2 cut(s)	329, 698
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	3 cut(s)	94, 232, 402
Hpy188III	TCNNGA	4 cut(s)	120, 616, 623, 738
Hpy8I	GTNNAC	1 cut(s)	463
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	3 cut(s)	12, 73, 357
HpyCH4III	ACNGT	3 cut(s)	247, 493, 499
HpyCH4V	TGCA	6 cut(s)	137, 425, 449, 651, 666, 761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	514
HpyF3I	CTNAG	2 cut(s)	204, 584
Hsp92II	CATG	2 cut(s)	302, 421
KflI	GGGWCCC	1 cut(s)	589
Kzo9I	GATC	6 cut(s)	44, 122, 139, 578, 633, 719
LmnI	GCTCC	2 cut(s)	168, 471
LweI	GCATC	2 cut(s)	458, 675
MabI	ACCWGGT	1 cut(s)	313
MaeI	CTAG	3 cut(s)	120, 324, 467
MaeIII	GTNAC	5 cut(s)	77, 305, 317, 493, 713
MalI	GATC	6 cut(s)	46, 124, 141, 580, 635, 721
MboI	GATC	6 cut(s)	44, 122, 139, 578, 633, 719
MboII	GAAGA	7 cut(s)	102, 514, 546, 554, 611, 753, 812
MflI	RGATCY	3 cut(s)	122, 139, 578
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	3 cut(s)	154, 744, 809
MluNI	TGGCCA	1 cut(s)	560
MlyI	GAGTC	2 cut(s)	596, 621
MmeI	TCCRAC	2 cut(s)	556, 622
Mox20I	TGGCCA	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	560
MseI	TTAA	1 cut(s)	823
MslI	CAYNNNNRTG	1 cut(s)	297
Msp20I	TGGCCA	1 cut(s)	560
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	3 cut(s)	315, 483, 773
Mva1269I	GAATGC	1 cut(s)	335
MvaI	CCWGG	3 cut(s)	315, 483, 773
MwoI	GCNNNNNNNGC	1 cut(s)	514
NdeII	GATC	6 cut(s)	44, 122, 139, 578, 633, 719
NlaIII	CATG	2 cut(s)	302, 421
NlaIV	GGNNCC	3 cut(s)	580, 590, 591
NmuCI	GTSAC	4 cut(s)	77, 317, 493, 713
NspI	RCATGY	1 cut(s)	421
PaeR7I	CTCGAG	1 cut(s)	455
PctI	GAATGC	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	619
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	2 cut(s)	596, 620
PpsI	GAGTC	2 cut(s)	596, 620
PpuMI	RGGWCCY	2 cut(s)	589, 755
PsiI	TTATAA	1 cut(s)	176
Psp5II	RGGWCCY	2 cut(s)	589, 755
Psp6I	CCWGG	3 cut(s)	313, 481, 771
PspEI	GGTNACC	1 cut(s)	317
PspFI	CCCAGC	1 cut(s)	238
PspGI	CCWGG	3 cut(s)	313, 481, 771
PspN4I	GGNNCC	3 cut(s)	580, 590, 591
PspPI	GGNCC	2 cut(s)	589, 755
PspPPI	RGGWCCY	2 cut(s)	589, 755
PspXI	VCTCGAGB	1 cut(s)	455
PstI	CTGCAG	1 cut(s)	139
PsuI	RGATCY	3 cut(s)	122, 139, 578
RsaI	GTAC	1 cut(s)	780
RsaNI	GTAC	1 cut(s)	779
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	823
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	6 cut(s)	44, 122, 139, 578, 633, 719
Sau96I	GGNCC	2 cut(s)	589, 755
SchI	GAGTC	2 cut(s)	596, 621
ScrFI	CCNGG	3 cut(s)	315, 483, 773
SexAI	ACCWGGT	1 cut(s)	313
SfaNI	GCATC	2 cut(s)	458, 675
SfcI	CTRYAG	2 cut(s)	135, 787
Sfr274I	CTCGAG	1 cut(s)	455
SinI	GGWCC	2 cut(s)	589, 755
SlaI	CTCGAG	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	2 cut(s)	192, 455
SmoI	CTYRAG	2 cut(s)	192, 455
Sse9I	AATT	3 cut(s)	154, 744, 809
SsiI	CCGC	3 cut(s)	114, 331, 388
SspMI	CTAG	3 cut(s)	120, 324, 467
StyD4I	CCNGG	3 cut(s)	313, 481, 771
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	3 cut(s)	247, 493, 499
TaqI	TCGA	3 cut(s)	50, 249, 456
TasI	AATT	3 cut(s)	154, 744, 809
TfiI	GAWTC	1 cut(s)	619
Tru1I	TTAA	1 cut(s)	823
Tru9I	TTAA	1 cut(s)	823
TseFI	GTSAC	4 cut(s)	77, 317, 493, 713
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	4 cut(s)	77, 317, 493, 713
TspDTI	ATGAA	1 cut(s)	514
TspGWI	ACGGA	2 cut(s)	699, 732
VpaK11BI	GGWCC	2 cut(s)	589, 755
XbaI	TCTAGA	1 cut(s)	119
XceI	RCATGY	1 cut(s)	421
XhoI	CTCGAG	1 cut(s)	455
XmaJI	CCTAGG	1 cut(s)	466
XspI	CTAG	3 cut(s)	120, 324, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.