Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8327683.1

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Reverse (-)

376 .. 783

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8327683.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgtctgccagcaaagatgtccttgctcttgcttccattgaggtcgacctatccagcattgagcctggcagtactgttactgtcaagtggagggggaagccagtttttattaggcgtagaactgaagatgacatcaagttggctaatagtattgatgttcagtcacttcgcgatcctcaacaggactcagagagggttaaggatccagaatggcttattgttgttggtgtctgcactcacttggggtgcatccccttgccaaatgctggtgactttggcggatggttttgcccatgccatggttcacactatgacatttctggtaggatccgcaaggggcctgcaccctacaatcttgaggtacccacttacagttttttgaccgagaacaagttactcattgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0006091 GO:0006950 GO:0008121 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016679 GO:0016681 GO:0019866 GO:0022900 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046872 GO:0050896 GO:0055114 GO:0070069 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

135

Amino Acids

14.91

Weight (kDa)

5.88

Isoelectric Point (pI)

60.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	361
AccB1I	GGYRCC	1 cut(s)	361
AccB7I	CCANNNNNTGG	2 cut(s)	266, 299
AccI	GTMKAC	1 cut(s)	45
AccII	CGCG	1 cut(s)	171
AciI	CCGC	2 cut(s)	279, 331
AclWI	GGATC	5 cut(s)	167, 197, 210, 322, 335
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	2 cut(s)	73, 363
AfiI	CCNNNNNNNGG	2 cut(s)	266, 299
AjnI	CCWGG	1 cut(s)	64
AlwI	GGATC	5 cut(s)	167, 197, 210, 322, 335
AoxI	GGCC	1 cut(s)	338
Asp718I	GGTACC	1 cut(s)	361
AspS9I	GGNCC	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	281
BamHI	GGATCC	2 cut(s)	202, 327
BanI	GGYRCC	1 cut(s)	361
BccI	CCATC	1 cut(s)	276
BciT130I	CCWGG	1 cut(s)	66
BmcAI	AGTACT	1 cut(s)	73
Bme1390I	CCNGG	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	4 cut(s)	204, 329, 339, 363
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 299
Bse1I	ACTGG	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	2 cut(s)	249, 287
BseLI	CCNNNNNNNGG	2 cut(s)	266, 299
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	101
BsgI	GTGCAG	2 cut(s)	217, 327
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	340
BshNI	GGYRCC	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	266, 299
BsnI	GGCC	1 cut(s)	340
Bsp143I	GATC	3 cut(s)	172, 202, 327
Bsp19I	CCATGG	1 cut(s)	298
Bsp68I	TCGCGA	1 cut(s)	171
BspACI	CCGC	2 cut(s)	279, 331
BspANI	GGCC	1 cut(s)	340
BspCNI	CTCAG	1 cut(s)	200
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	4 cut(s)	204, 329, 339, 363
BspPI	GGATC	5 cut(s)	167, 197, 210, 322, 335
BspT107I	GGYRCC	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	3 cut(s)	172, 202, 327
BssT1I	CCWWGG	1 cut(s)	298
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	3 cut(s)	76, 82, 374
BstC8I	GCNNGC	2 cut(s)	10, 342
BstDEI	CTNAG	1 cut(s)	187
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	2 cut(s)	249, 287
BstFNI	CGCG	1 cut(s)	171
BstKTI	GATC	3 cut(s)	175, 205, 330
BstMBI	GATC	3 cut(s)	172, 202, 327
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstUI	CGCG	1 cut(s)	171
BstX2I	RGATCY	2 cut(s)	202, 327
BstYI	RGATCY	2 cut(s)	202, 327
BsuRI	GGCC	1 cut(s)	340
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	249, 287
BtuMI	TCGCGA	1 cut(s)	171
Cac8I	GCNNGC	2 cut(s)	10, 342
Cfr13I	GGNCC	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	72, 362
CviAII	CATG	2 cut(s)	294, 299
CviJI	RGCY	5 cut(s)	64, 100, 143, 214, 340
CviKI_1	RGCY	5 cut(s)	64, 100, 143, 214, 340
CviQI	GTAC	2 cut(s)	72, 362
DdeI	CTNAG	1 cut(s)	187
DpnI	GATC	3 cut(s)	174, 204, 329
DpnII	GATC	3 cut(s)	172, 202, 327
EciI	GGCGGA	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	2 cut(s)	297, 302
FaiI	YATR	3 cut(s)	295, 300, 312
FalI	AAGNNNNNCTT	1 cut(s)	38
FatI	CATG	2 cut(s)	293, 298
FblI	GTMKAC	1 cut(s)	45
FokI	GGATG	2 cut(s)	236, 294
HaeIII	GGCC	1 cut(s)	340
Hin1II	CATG	2 cut(s)	297, 302
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	1 cut(s)	185
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	2 cut(s)	46, 305
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	3 cut(s)	170, 206, 356
Hpy8I	GTNNAC	2 cut(s)	46, 305
HpyCH4III	ACNGT	3 cut(s)	76, 82, 374
HpyCH4V	TGCA	3 cut(s)	234, 249, 344
HpyF3I	CTNAG	1 cut(s)	187
Hsp92II	CATG	2 cut(s)	297, 302
KpnI	GGTACC	1 cut(s)	365
Kzo9I	GATC	3 cut(s)	172, 202, 327
LweI	GCATC	1 cut(s)	258
MaeIII	GTNAC	4 cut(s)	76, 162, 269, 393
MalI	GATC	3 cut(s)	174, 204, 329
MboI	GATC	3 cut(s)	172, 202, 327
MboII	GAAGA	1 cut(s)	137
MflI	RGATCY	2 cut(s)	202, 327
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	5 cut(s)	34, 84, 186, 186, 352
MseI	TTAA	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
MvnI	CGCG	1 cut(s)	171
NcoI	CCATGG	1 cut(s)	298
NdeII	GATC	3 cut(s)	172, 202, 327
NlaIII	CATG	2 cut(s)	297, 302
NlaIV	GGNNCC	4 cut(s)	204, 329, 339, 363
NmuCI	GTSAC	2 cut(s)	162, 269
NruI	TCGCGA	1 cut(s)	171
PflMI	CCANNNNNTGG	2 cut(s)	266, 299
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	4 cut(s)	204, 329, 339, 363
PspPI	GGNCC	1 cut(s)	338
PsuI	RGATCY	2 cut(s)	202, 327
RruI	TCGCGA	1 cut(s)	171
RsaI	GTAC	2 cut(s)	73, 363
RsaNI	GTAC	2 cut(s)	72, 362
SalI	GTCGAC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	198
Sau3AI	GATC	3 cut(s)	172, 202, 327
Sau96I	GGNCC	1 cut(s)	338
ScaI	AGTACT	1 cut(s)	73
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	66
SetI	ASST	3 cut(s)	45, 51, 363
SfaNI	GCATC	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SsiI	CCGC	2 cut(s)	279, 331
StyD4I	CCNGG	1 cut(s)	64
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	3 cut(s)	76, 82, 374
TaqI	TCGA	1 cut(s)	45
TaqII	GACCGA	1 cut(s)	398
TatI	WGTACW	1 cut(s)	71
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseFI	GTSAC	2 cut(s)	162, 269
Tsp45I	GTSAC	2 cut(s)	162, 269
Van91I	CCANNNNNTGG	2 cut(s)	266, 299
XmiI	GTMKAC	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.