Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Reverse (-)

39690165 .. 39692570

Gene Structure 2406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g54320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTTGAGGGTTGCGGCGAGGAGGCTCTCTTCTCTGACTGCTTCGCCGTGGAGGCCCAGCCAGGCCACTGCAGCCTCCTCCGTCCTGTCTCGGAATCTCATCGACTCCTCCGATGACCTCAGATCCACATACTTGAGGCCCGACTTGTATCTTCCTTCCAGAGGTTTCGCTTCCAATTCAGTGACCCCATCAGGGGACAACAGCATAGTACCAGATGTTCCTCCAACTGTTGCAGCTGTCAAAAATCCATCTTCAAAGATAGTTTATGATGAATACAACCATGAGCGTTACCCTCCAGGCGACCCCAGCAAGCGGGCATTTGCCTACTTTGTCCTCACAGGCGGTAGGTTTGTCTATGCTTCTCTAATTCGTCTACTTGTCCTCAAGTTTGTACTGAGCATGTCAGCCAGTAAGGATGTTCTAGCAATGGCTTCTCTCGAGGTTGATCTCTCAAGCATTGAGCCAGGCTCAACTGTGACTGTTAAGTGGCGTGGAAAGCCAGTGTTCATCAGGCGCCGAACTGATGATGATATCAAGCTGGCAAATAGTGTAGATGTTCATTCTCTTCGCGATCCCCAGCAAGATGCTGAGAGGGTTAAAGACCCAGAATGGCTTATTGTTGTTGGGGTCTGCACACATCTGGGTTGCATTCCCTTGCCAAATGCTGGTGATTTTGGGGGATGGTTTTGCCCCTGCCATGGTTCCCACTATGACATTTCTGGCAGGATCCGCAAGGGACCAGCACCATACAATTTGGAGGTACCTACATATTCCTTCTTGGAAGCAAACAAGTTATTGATTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

269

Amino Acids

29.45

Weight (kDa)

8.84

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_TM	PF02921	101 - 139	1.1e-08	Ubiquinol cytochrome reductase transmembrane region
Rieske	PF00355	155 - 253	1.4e-08	Rieske [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	760
AccB1I	GGYRCC	2 cut(s)	513, 760
AccB7I	CCANNNNNTGG	1 cut(s)	665
AccI	GTMKAC	1 cut(s)	373
AccII	CGCG	1 cut(s)	570
AciI	CCGC	4 cut(s)	14, 313, 342, 730
AclWI	GGATC	4 cut(s)	117, 566, 721, 734
AcyI	GRCGYC	1 cut(s)	514
AfaI	GTAC	3 cut(s)	210, 393, 762
AfiI	CCNNNNNNNGG	6 cut(s)	161, 192, 193, 312, 665, 698
AgsI	TTSAA	1 cut(s)	255
AjnI	CCWGG	3 cut(s)	60, 295, 463
AluBI	AGCT	2 cut(s)	236, 538
AluI	AGCT	2 cut(s)	236, 538
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	4 cut(s)	117, 566, 721, 734
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	3 cut(s)	53, 63, 137
ApeKI	GCWGC	2 cut(s)	71, 233
Asp718I	GGTACC	1 cut(s)	760
AspLEI	GCGC	1 cut(s)	516
AspS9I	GGNCC	3 cut(s)	54, 138, 737
AsuHPI	GGTGA	1 cut(s)	680
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	737
BamHI	GGATCC	1 cut(s)	726
BanI	GGYRCC	2 cut(s)	513, 760
BbvI	GCAGC	2 cut(s)	83, 245
BccI	CCATC	3 cut(s)	196, 256, 675
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	3 cut(s)	62, 297, 465
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	69
BfoI	RGCGCY	1 cut(s)	517
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	3 cut(s)	15, 72, 234
BlsI	GCNGC	3 cut(s)	16, 73, 235
Bme1390I	CCNGG	3 cut(s)	62, 297, 465
Bme18I	GGWCC	1 cut(s)	737
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	3 cut(s)	54, 138, 737
BmiI	GGNNCC	5 cut(s)	515, 703, 728, 738, 762
BmrFI	CCNGG	3 cut(s)	62, 297, 465
BmsI	GCATC	1 cut(s)	574
BplI	GAGNNNNNCTC	2 cut(s)	452, 484
BpmI	CTGGAG	1 cut(s)	279
BpuEI	CTTGAG	3 cut(s)	154, 368, 436
BsaHI	GRCGYC	1 cut(s)	514
BsaJI	CCNNGG	2 cut(s)	47, 697
Bsc4I	CCNNNNNNNGG	6 cut(s)	161, 192, 193, 312, 665, 698
Bse1I	ACTGG	2 cut(s)	408, 500
Bse3DI	GCAATG	1 cut(s)	432
BseBI	CCWGG	3 cut(s)	62, 297, 465
BseDI	CCNNGG	2 cut(s)	47, 697
BseGI	GGATG	2 cut(s)	421, 686
BseLI	CCNNNNNNNGG	6 cut(s)	161, 192, 193, 312, 665, 698
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	3 cut(s)	133, 386, 579
BseNI	ACTGG	2 cut(s)	408, 500
BseRI	GAGGAG	3 cut(s)	34, 67, 97
BseXI	GCAGC	2 cut(s)	83, 245
BseYI	CCCAGC	3 cut(s)	56, 305, 576
BsgI	GTGCAG	1 cut(s)	616
Bsh1236I	CGCG	1 cut(s)	570
BshFI	GGCC	3 cut(s)	55, 65, 139
BshNI	GGYRCC	2 cut(s)	513, 760
BsiHKCI	CYCGRG	1 cut(s)	437
BslFI	GGGAC	2 cut(s)	209, 750
BslI	CCNNNNNNNGG	6 cut(s)	161, 192, 193, 312, 665, 698
BsmAI	GTCTC	1 cut(s)	93
BsmFI	GGGAC	2 cut(s)	209, 750
BsmI	GAATGC	1 cut(s)	648
BsnI	GGCC	3 cut(s)	55, 65, 139
BsoBI	CYCGRG	1 cut(s)	437
Bsp143I	GATC	4 cut(s)	122, 445, 571, 726
Bsp19I	CCATGG	1 cut(s)	697
Bsp68I	TCGCGA	1 cut(s)	570
BspACI	CCGC	4 cut(s)	14, 313, 342, 730
BspANI	GGCC	3 cut(s)	55, 65, 139
BspCNI	CTCAG	3 cut(s)	132, 387, 580
BspFNI	CGCG	1 cut(s)	570
BspLI	GGNNCC	5 cut(s)	515, 703, 728, 738, 762
BspMAI	CTGCAG	1 cut(s)	73
BspPI	GGATC	4 cut(s)	117, 566, 721, 734
BspT107I	GGYRCC	2 cut(s)	513, 760
BsrDI	GCAATG	1 cut(s)	432
BsrI	ACTGG	2 cut(s)	408, 500
BssECI	CCNNGG	2 cut(s)	47, 697
BssMI	GATC	4 cut(s)	122, 445, 571, 726
BssNI	GRCGYC	1 cut(s)	514
BssT1I	CCWWGG	1 cut(s)	697
Bst2UI	CCWGG	3 cut(s)	62, 297, 465
Bst4CI	ACNGT	3 cut(s)	229, 475, 481
Bst6I	CTCTTC	2 cut(s)	34, 570
BstACI	GRCGYC	1 cut(s)	514
BstC8I	GCNNGC	3 cut(s)	311, 315, 540
BstDEI	CTNAG	3 cut(s)	119, 395, 588
BstDSI	CCRYGG	2 cut(s)	47, 697
BstENI	CCTNNNNNAGG	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	421, 686
BstFNI	CGCG	1 cut(s)	570
BstH2I	RGCGCY	1 cut(s)	517
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	4 cut(s)	125, 448, 574, 729
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	4 cut(s)	122, 445, 571, 726
BstMWI	GCNNNNNNNGC	5 cut(s)	52, 71, 306, 496, 729
BstNI	CCWGG	3 cut(s)	62, 297, 465
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	3 cut(s)	60, 295, 463
BstSFI	CTRYAG	1 cut(s)	69
BstUI	CGCG	1 cut(s)	570
BstV1I	GCAGC	2 cut(s)	83, 245
BstX2I	RGATCY	2 cut(s)	122, 726
BstYI	RGATCY	2 cut(s)	122, 726
BsuRI	GGCC	3 cut(s)	55, 65, 139
BtgI	CCRYGG	2 cut(s)	47, 697
BtsCI	GGATG	2 cut(s)	421, 686
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	3 cut(s)	66, 186, 507
BtuMI	TCGCGA	1 cut(s)	570
Cac8I	GCNNGC	3 cut(s)	311, 315, 540
CfoI	GCGC	1 cut(s)	516
Cfr13I	GGNCC	3 cut(s)	54, 138, 737
Csp6I	GTAC	3 cut(s)	209, 392, 761
CviAII	CATG	3 cut(s)	281, 400, 698
CviQI	GTAC	3 cut(s)	209, 392, 761
DdeI	CTNAG	3 cut(s)	119, 395, 588
DinI	GGCGCC	1 cut(s)	515
DpnI	GATC	4 cut(s)	124, 447, 573, 728
DpnII	GATC	4 cut(s)	122, 445, 571, 726
Eam1104I	CTCTTC	2 cut(s)	34, 570
EarI	CTCTTC	2 cut(s)	34, 570
Eco130I	CCWWGG	1 cut(s)	697
Eco32I	GATATC	1 cut(s)	532
Eco47I	GGWCC	1 cut(s)	737
Eco88I	CYCGRG	1 cut(s)	437
EcoNI	CCTNNNNNAGG	1 cut(s)	159
EcoRII	CCWGG	3 cut(s)	60, 295, 463
EcoRV	GATATC	1 cut(s)	532
EcoT14I	CCWWGG	1 cut(s)	697
EgeI	GGCGCC	1 cut(s)	515
EheI	GGCGCC	1 cut(s)	515
ErhI	CCWWGG	1 cut(s)	697
FaeI	CATG	3 cut(s)	284, 403, 701
FaqI	GGGAC	2 cut(s)	209, 750
FatI	CATG	3 cut(s)	280, 399, 697
FauI	CCCGC	1 cut(s)	306
FblI	GTMKAC	1 cut(s)	373
Fnu4HI	GCNGC	3 cut(s)	15, 72, 234
FokI	GGATG	2 cut(s)	428, 693
Fsp4HI	GCNGC	3 cut(s)	15, 72, 234
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	3 cut(s)	15, 72, 234
GsaI	CCCAGC	3 cut(s)	60, 309, 580
GsuI	CTGGAG	1 cut(s)	279
HaeII	RGCGCY	1 cut(s)	517
HaeIII	GGCC	3 cut(s)	55, 65, 139
HhaI	GCGC	1 cut(s)	516
Hin1I	GRCGYC	1 cut(s)	514
Hin1II	CATG	3 cut(s)	284, 403, 701
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HinfI	GANTC	2 cut(s)	94, 104
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	4 cut(s)	36, 93, 112, 122
Hpy188III	TCNNGA	3 cut(s)	159, 437, 569
Hpy8I	GTNNAC	1 cut(s)	374
HpyAV	CCTTC	2 cut(s)	165, 784
HpyCH4III	ACNGT	3 cut(s)	229, 475, 481
HpyCH4V	TGCA	4 cut(s)	71, 233, 633, 648
HpyF10VI	GCNNNNNNNGC	5 cut(s)	52, 71, 306, 496, 729
HpyF3I	CTNAG	3 cut(s)	119, 395, 588
Hsp92I	GRCGYC	1 cut(s)	514
Hsp92II	CATG	3 cut(s)	284, 403, 701
HspAI	GCGC	1 cut(s)	514
KasI	GGCGCC	1 cut(s)	513
KpnI	GGTACC	1 cut(s)	764
Kzo9I	GATC	4 cut(s)	122, 445, 571, 726
Lsp1109I	GCAGC	2 cut(s)	83, 245
LweI	GCATC	1 cut(s)	574
MaeI	CTAG	1 cut(s)	422
MaeIII	GTNAC	3 cut(s)	181, 287, 475
MalI	GATC	4 cut(s)	124, 447, 573, 728
MboI	GATC	4 cut(s)	122, 445, 571, 726
MboII	GAAGA	4 cut(s)	21, 143, 243, 557
MflI	RGATCY	2 cut(s)	122, 726
MluCI	AATT	3 cut(s)	175, 366, 751
Mly113I	GGCGCC	1 cut(s)	514
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	248
MseI	TTAA	2 cut(s)	483, 597
MspA1I	CMGCKG	1 cut(s)	236
MspR9I	CCNGG	3 cut(s)	62, 297, 465
Mva1269I	GAATGC	1 cut(s)	648
MvaI	CCWGG	3 cut(s)	62, 297, 465
MvnI	CGCG	1 cut(s)	570
MwoI	GCNNNNNNNGC	5 cut(s)	52, 71, 306, 496, 729
NarI	GGCGCC	1 cut(s)	514
NcoI	CCATGG	1 cut(s)	697
NdeII	GATC	4 cut(s)	122, 445, 571, 726
NlaIII	CATG	3 cut(s)	284, 403, 701
NlaIV	GGNNCC	5 cut(s)	515, 703, 728, 738, 762
NmuCI	GTSAC	2 cut(s)	181, 475
NruI	TCGCGA	1 cut(s)	570
NspI	RCATGY	1 cut(s)	403
PaeR7I	CTCGAG	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PctI	GAATGC	1 cut(s)	648
PfeI	GAWTC	1 cut(s)	94
PflMI	CCANNNNNTGG	1 cut(s)	665
PkrI	GCNGC	3 cut(s)	16, 73, 235
PleI	GAGTC	1 cut(s)	98
PluTI	GGCGCC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	98
Psp6I	CCWGG	3 cut(s)	60, 295, 463
PspFI	CCCAGC	3 cut(s)	56, 305, 576
PspGI	CCWGG	3 cut(s)	60, 295, 463
PspN4I	GGNNCC	5 cut(s)	515, 703, 728, 738, 762
PspPI	GGNCC	3 cut(s)	54, 138, 737
PsrI	GAACNNNNNNTAC	2 cut(s)	201, 233
PstI	CTGCAG	1 cut(s)	73
PsuI	RGATCY	2 cut(s)	122, 726
PvuII	CAGCTG	1 cut(s)	236
RruI	TCGCGA	1 cut(s)	570
RsaI	GTAC	3 cut(s)	210, 393, 762
RsaNI	GTAC	3 cut(s)	209, 392, 761
SaqAI	TTAA	2 cut(s)	483, 597
SatI	GCNGC	3 cut(s)	15, 72, 234
Sau3AI	GATC	4 cut(s)	122, 445, 571, 726
Sau96I	GGNCC	3 cut(s)	54, 138, 737
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	3 cut(s)	62, 297, 465
SetI	ASST	8 cut(s)	120, 166, 238, 350, 444, 540, 762, 766
SfaNI	GCATC	1 cut(s)	574
SfcI	CTRYAG	1 cut(s)	69
SfoI	GGCGCC	1 cut(s)	515
Sfr274I	CTCGAG	1 cut(s)	437
SinI	GGWCC	1 cut(s)	737
SlaI	CTCGAG	1 cut(s)	437
SmlI	CTYRAG	4 cut(s)	133, 383, 437, 451
SmoI	CTYRAG	4 cut(s)	133, 383, 437, 451
Sse9I	AATT	3 cut(s)	175, 366, 751
SsiI	CCGC	4 cut(s)	14, 313, 342, 730
SspDI	GGCGCC	1 cut(s)	513
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	3 cut(s)	60, 295, 463
StyI	CCWWGG	1 cut(s)	697
TaaI	ACNGT	3 cut(s)	229, 475, 481
TaqI	TCGA	2 cut(s)	102, 438
TasI	AATT	3 cut(s)	175, 366, 751
TatI	WGTACW	1 cut(s)	391
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	2 cut(s)	483, 597
Tru9I	TTAA	2 cut(s)	483, 597
TscAI	CASTG	3 cut(s)	73, 186, 507
TseFI	GTSAC	2 cut(s)	181, 475
TseI	GCWGC	2 cut(s)	71, 233
Tsp45I	GTSAC	2 cut(s)	181, 475
TspDTI	ATGAA	3 cut(s)	285, 496, 548
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	3 cut(s)	73, 186, 507
Van91I	CCANNNNNTGG	1 cut(s)	665
VpaK11BI	GGWCC	1 cut(s)	737
XagI	CCTNNNNNAGG	1 cut(s)	159
XceI	RCATGY	1 cut(s)	403
XhoI	CTCGAG	1 cut(s)	437
XmiI	GTMKAC	1 cut(s)	373
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.