Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Reverse (-)

46425583 .. 46427031

Gene Structure 1449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG292100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCTTGCTCTGATTGTTTGCTTGTACGATTTTCCTCTGACGCCCTCGCTCCTGGACATGATATTGGTGGTATGATCTCAGATGTCCCAGCTACTGTGGCAGCACTGAAGAATCCTTCTTCAAAGATTGTATATGATGACTACAACCATGAAAGATACCCACCTGGTGATCCCAGCAAGCGTGCATTTGCTTATTTTGTCTTGACAGGTGGAAGGTTTGTGTATGCATCCTTGATCCGGCTTCTGGTCCTCAAGTTTGTTTTGAGCATGTCTGCCAGCAAAGATGTCCTTGCTCTTGCTTCCCTTGAGGTTGACCTATCCAGCATTGAGCCTGGCAGTACTGTTACTGTCAAGTGGAGGGGGAAGCCAGTTTTTATTAGGCGTAGAACTGAAGATGACATCAAGTTGGCTAATAGTATTGATGTTCAGTCACTTCGTGATCCTCAACAGGACTCAGAGAGGGTTAAGGATCCAGAATGGCTTATTGTTGTTGGGGTCTGCACTCACTTGGGGTGCATCCCCTTGCCAAATGCTGGTGACTTTGGCGGATGGTTTTGCCCATGCCATGGTTCGCACTATGACATTTCTGGTAGGATCCGCAAGGGGCCTGCACCCTACAATCTTGAGGTACCCACTTACAGTTTTTTGACCGAGAACAAGTTACTCATTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0006091 GO:0006950 GO:0008121 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016679 GO:0016681 GO:0019866 GO:0022900 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046872 GO:0050896 GO:0055114 GO:0070069 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

224

Amino Acids

24.59

Weight (kDa)

6.51

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_TM	PF02921	57 - 95	8.9e-09	Ubiquinol cytochrome reductase transmembrane region
Rieske	PF00355	148 - 209	1.1e-08	Rieske [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	628
AccB1I	GGYRCC	1 cut(s)	628
AccB7I	CCANNNNNTGG	2 cut(s)	533, 566
AciI	CCGC	2 cut(s)	546, 598
AclWI	GGATC	7 cut(s)	164, 229, 434, 464, 477, 589, 602
AcuI	CTGAAG	2 cut(s)	128, 411
AcyI	GRCGYC	1 cut(s)	42
AdeI	CACNNNGTG	2 cut(s)	167, 437
AfaI	GTAC	3 cut(s)	27, 340, 630
AfiI	CCNNNNNNNGG	4 cut(s)	237, 244, 533, 566
AgsI	TTSAA	1 cut(s)	123
AjnI	CCWGG	3 cut(s)	52, 163, 331
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
AlwI	GGATC	7 cut(s)	164, 229, 434, 464, 477, 589, 602
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	1 cut(s)	605
ApeKI	GCWGC	1 cut(s)	101
Asp718I	GGTACC	1 cut(s)	628
AspS9I	GGNCC	2 cut(s)	247, 605
AsuHPI	GGTGA	2 cut(s)	179, 548
AvaII	GGWCC	1 cut(s)	247
BamHI	GGATCC	2 cut(s)	469, 594
BanI	GGYRCC	1 cut(s)	628
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	1 cut(s)	543
BciT130I	CCWGG	3 cut(s)	54, 165, 333
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
BmcAI	AGTACT	1 cut(s)	340
Bme1390I	CCNGG	3 cut(s)	54, 165, 333
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	2 cut(s)	247, 605
BmiI	GGNNCC	4 cut(s)	471, 596, 606, 630
BmrFI	CCNGG	3 cut(s)	54, 165, 333
BmsI	GCATC	2 cut(s)	236, 525
BpuEI	CTTGAG	3 cut(s)	236, 326, 644
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	4 cut(s)	237, 244, 533, 566
Bse1I	ACTGG	1 cut(s)	368
BseBI	CCWGG	3 cut(s)	54, 165, 333
BseDI	CCNNGG	1 cut(s)	565
BseGI	GGATG	3 cut(s)	227, 516, 554
BseLI	CCNNNNNNNGG	4 cut(s)	237, 244, 533, 566
BseMII	CTCAG	2 cut(s)	93, 468
BseNI	ACTGG	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	113
BseYI	CCCAGC	2 cut(s)	88, 173
BsgI	GTGCAG	2 cut(s)	484, 594
BshFI	GGCC	1 cut(s)	607
BshNI	GGYRCC	1 cut(s)	628
BsiSI	CCGG	1 cut(s)	238
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	4 cut(s)	237, 244, 533, 566
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	607
Bsp143I	GATC	6 cut(s)	75, 169, 234, 439, 469, 594
Bsp19I	CCATGG	1 cut(s)	565
BspACI	CCGC	2 cut(s)	546, 598
BspANI	GGCC	1 cut(s)	607
BspCNI	CTCAG	2 cut(s)	92, 467
BspLI	GGNNCC	4 cut(s)	471, 596, 606, 630
BspPI	GGATC	7 cut(s)	164, 229, 434, 464, 477, 589, 602
BspT107I	GGYRCC	1 cut(s)	628
BsrI	ACTGG	1 cut(s)	368
BssECI	CCNNGG	1 cut(s)	565
BssMI	GATC	6 cut(s)	75, 169, 234, 439, 469, 594
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	565
Bst2UI	CCWGG	3 cut(s)	54, 165, 333
Bst4CI	ACNGT	4 cut(s)	97, 343, 349, 641
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	5 cut(s)	7, 179, 183, 277, 609
BstDEI	CTNAG	2 cut(s)	79, 454
BstDSI	CCRYGG	1 cut(s)	565
BstF5I	GGATG	3 cut(s)	227, 516, 554
BstKTI	GATC	6 cut(s)	78, 172, 237, 442, 472, 597
BstMBI	GATC	6 cut(s)	75, 169, 234, 439, 469, 594
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	3 cut(s)	54, 165, 333
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	3 cut(s)	52, 163, 331
BstV1I	GCAGC	1 cut(s)	113
BstX2I	RGATCY	2 cut(s)	469, 594
BstYI	RGATCY	2 cut(s)	469, 594
BsuRI	GGCC	1 cut(s)	607
BtgI	CCRYGG	1 cut(s)	565
BtsCI	GGATG	3 cut(s)	227, 516, 554
BtsIMutI	CAGTG	1 cut(s)	104
Cac8I	GCNNGC	5 cut(s)	7, 179, 183, 277, 609
CaiI	CAGNNNCTG	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	247, 605
CseI	GACGC	1 cut(s)	50
CsiI	ACCWGGT	1 cut(s)	163
Csp6I	GTAC	3 cut(s)	26, 339, 629
CviAII	CATG	5 cut(s)	59, 149, 268, 561, 566
CviJI	RGCY	8 cut(s)	5, 92, 241, 331, 367, 410, 481, 607
CviKI_1	RGCY	8 cut(s)	5, 92, 241, 331, 367, 410, 481, 607
CviQI	GTAC	3 cut(s)	26, 339, 629
DdeI	CTNAG	2 cut(s)	79, 454
DpnI	GATC	6 cut(s)	77, 171, 236, 441, 471, 596
DpnII	GATC	6 cut(s)	75, 169, 234, 439, 469, 594
DraIII	CACNNNGTG	2 cut(s)	167, 437
EciI	GGCGGA	1 cut(s)	561
Eco130I	CCWWGG	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	247
Eco57I	CTGAAG	2 cut(s)	128, 411
EcoO109I	RGGNCCY	1 cut(s)	605
EcoRII	CCWGG	3 cut(s)	52, 163, 331
EcoT14I	CCWWGG	1 cut(s)	565
EcoT22I	ATGCAT	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	565
FaeI	CATG	5 cut(s)	62, 152, 271, 564, 569
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	5 cut(s)	58, 148, 267, 560, 565
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	3 cut(s)	214, 503, 561
Fsp4HI	GCNGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	102
GsaI	CCCAGC	2 cut(s)	92, 177
HaeIII	GGCC	1 cut(s)	607
HapII	CCGG	1 cut(s)	238
HgaI	GACGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	5 cut(s)	62, 152, 271, 564, 569
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	2 cut(s)	112, 452
HpaII	CCGG	1 cut(s)	238
HphI	GGTGA	2 cut(s)	179, 548
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	4 cut(s)	13, 40, 82, 457
Hpy188III	TCNNGA	4 cut(s)	202, 437, 473, 623
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	2 cut(s)	126, 207
HpyCH4III	ACNGT	4 cut(s)	97, 343, 349, 641
HpyCH4V	TGCA	5 cut(s)	185, 227, 501, 516, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	2 cut(s)	79, 454
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	5 cut(s)	62, 152, 271, 564, 569
KpnI	GGTACC	1 cut(s)	632
Kzo9I	GATC	6 cut(s)	75, 169, 234, 439, 469, 594
LmnI	GCTCC	1 cut(s)	55
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	2 cut(s)	236, 525
MabI	ACCWGGT	1 cut(s)	163
MaeIII	GTNAC	4 cut(s)	343, 429, 536, 660
MalI	GATC	6 cut(s)	77, 171, 236, 441, 471, 596
MboI	GATC	6 cut(s)	75, 169, 234, 439, 469, 594
MboII	GAAGA	3 cut(s)	111, 121, 404
MflI	RGATCY	2 cut(s)	469, 594
MlyI	GAGTC	1 cut(s)	446
MnlI	CCTC	8 cut(s)	46, 56, 260, 301, 351, 453, 453, 619
Mph1103I	ATGCAT	1 cut(s)	229
MseI	TTAA	1 cut(s)	465
MspI	CCGG	1 cut(s)	238
MspR9I	CCNGG	3 cut(s)	54, 165, 333
MvaI	CCWGG	3 cut(s)	54, 165, 333
MwoI	GCNNNNNNNGC	1 cut(s)	98
NcoI	CCATGG	1 cut(s)	565
NdeII	GATC	6 cut(s)	75, 169, 234, 439, 469, 594
NlaIII	CATG	5 cut(s)	62, 152, 271, 564, 569
NlaIV	GGNNCC	4 cut(s)	471, 596, 606, 630
NmuCI	GTSAC	2 cut(s)	429, 536
NsiI	ATGCAT	1 cut(s)	229
NspI	RCATGY	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	112
PflMI	CCANNNNNTGG	2 cut(s)	533, 566
PfoI	TCCNGGA	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
Psp6I	CCWGG	3 cut(s)	52, 163, 331
PspFI	CCCAGC	2 cut(s)	88, 173
PspGI	CCWGG	3 cut(s)	52, 163, 331
PspN4I	GGNNCC	4 cut(s)	471, 596, 606, 630
PspPI	GGNCC	2 cut(s)	247, 605
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	2 cut(s)	469, 594
RsaI	GTAC	3 cut(s)	27, 340, 630
RsaNI	GTAC	3 cut(s)	26, 339, 629
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	6 cut(s)	75, 169, 234, 439, 469, 594
Sau96I	GGNCC	2 cut(s)	247, 605
ScaI	AGTACT	1 cut(s)	340
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	3 cut(s)	54, 165, 333
SetI	ASST	7 cut(s)	94, 166, 211, 218, 312, 318, 630
SexAI	ACCWGGT	1 cut(s)	163
SfaNI	GCATC	2 cut(s)	236, 525
SinI	GGWCC	1 cut(s)	247
SmlI	CTYRAG	3 cut(s)	251, 305, 623
SmoI	CTYRAG	3 cut(s)	251, 305, 623
SsiI	CCGC	2 cut(s)	546, 598
StyD4I	CCNGG	3 cut(s)	52, 163, 331
StyI	CCWWGG	1 cut(s)	565
TaaI	ACNGT	4 cut(s)	97, 343, 349, 641
TaqII	GACCGA	1 cut(s)	665
TatI	WGTACW	1 cut(s)	338
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	2 cut(s)	429, 536
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	2 cut(s)	429, 536
TspDTI	ATGAA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	111
Van91I	CCANNNNNTGG	2 cut(s)	533, 566
VpaK11BI	GGWCC	1 cut(s)	247
XceI	RCATGY	1 cut(s)	271
ZrmI	AGTACT	1 cut(s)	340
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.