Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Reverse (-)

27142364 .. 27144375

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G313800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTTGAGGGTTGCGGCGAGGAGGCTCTGTTCTTTGTCTGCGTCGCCATGGAGGCCCAATCAGGCCGCCACCGCCTCCTCCTCTGTCCTGTCTCGGAATCTCATCGACGGCCGTGACTCCTCCGATGACCTCAGATCCATCTATTTCACTACTGACTTCTATCTTCCTTCCAGAGGTTTTGCTTCTGATTCACTGACCCCATCGAAGGACAACAATTTAGTTCCAGATGTTCCTCCAACTGTGGCAGCTGTTAAGAATCCTACTTCAAAGATAGTTTATGATGATTACAACCATGAGCGTTACCCTCCAGGTGACCCCAGCAAGCGGGCATTTGCCTACTTTGTCCTCACAGGCGGTAGGTTTGTCTATGCTTCTCTGATTCGTCTGCTTGTCCTCAAGTTTGTGCTAAGCATGTCAGCCAGTAAGGATGTTCTTGCCATGGCCTCGCTCGAGGTTGATCTCTCCAGCATAGAACCAGGTGCAACTGTGACTGTGAAGTGGCGTGGAAAGCCAGTCTTCATCAGGCGCCGAACTGACGATGATATCAAGCTGGCGAATAGTGTAGATGTTAATTCTCTTCGTGATCCCCAGCAAGATGCTGAGAGGGTCAAAAACCCAGAATGGCTTATTGTTGTTGGGGTCTGCACACATCTGGGCTGCATTCCCTTGCCAAATGCTGGTGACTTTGGTGGATGGTTTTGCCCATGCCATGGTTCCCACTATGATGTTTCTGGAAGGATCCGCAAGGGACCAGCACCATACAACTTGGAGGTACCCACATATACCTTCTTGGATGAGAACAAGTTATTGATTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

273

Amino Acids

30.04

Weight (kDa)

8.54

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	772
AccB1I	GGYRCC	2 cut(s)	525, 772
AccB7I	CCANNNNNTGG	2 cut(s)	677, 710
AciI	CCGC	6 cut(s)	14, 66, 72, 325, 354, 742
AclWI	GGATC	4 cut(s)	129, 578, 733, 746
AcoI	YGGCCR	1 cut(s)	109
AcyI	GRCGYC	1 cut(s)	526
AfaI	GTAC	1 cut(s)	774
AfiI	CCNNNNNNNGG	5 cut(s)	173, 205, 324, 677, 710
AgsI	TTSAA	1 cut(s)	267
AjnI	CCWGG	2 cut(s)	307, 475
AloI	GAACNNNNNNTCC	2 cut(s)	13, 45
AluBI	AGCT	2 cut(s)	248, 550
AluI	AGCT	2 cut(s)	248, 550
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	4 cut(s)	129, 578, 733, 746
Ama87I	CYCGRG	1 cut(s)	449
AoxI	GGCC	4 cut(s)	53, 63, 109, 441
ApeKI	GCWGC	2 cut(s)	245, 657
Asp718I	GGTACC	1 cut(s)	772
AspLEI	GCGC	1 cut(s)	528
AspS9I	GGNCC	2 cut(s)	54, 749
AsuHPI	GGTGA	2 cut(s)	323, 692
AvaI	CYCGRG	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	749
BamHI	GGATCC	1 cut(s)	738
BanI	GGYRCC	2 cut(s)	525, 772
BbsI	GAAGAC	1 cut(s)	508
BbvI	GCAGC	2 cut(s)	257, 644
BccI	CCATC	3 cut(s)	146, 208, 687
BceAI	ACGGC	2 cut(s)	96, 124
BciT130I	CCWGG	2 cut(s)	309, 477
BcoDI	GTCTC	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	529
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	4 cut(s)	15, 66, 246, 658
BlpI	GCTNAGC	1 cut(s)	407
BlsI	GCNGC	4 cut(s)	16, 67, 247, 659
Bme1390I	CCNGG	2 cut(s)	309, 477
Bme18I	GGWCC	1 cut(s)	749
BmeT110I	CYCGRG	1 cut(s)	449
BmgT120I	GGNCC	2 cut(s)	54, 749
BmiI	GGNNCC	5 cut(s)	527, 715, 740, 750, 774
BmrFI	CCNGG	2 cut(s)	309, 477
BmsI	GCATC	1 cut(s)	586
BpiI	GAAGAC	1 cut(s)	508
BpmI	CTGGAG	2 cut(s)	291, 448
Bpu1102I	GCTNAGC	1 cut(s)	407
BpuEI	CTTGAG	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	526
BsaJI	CCNNGG	3 cut(s)	47, 438, 709
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	5 cut(s)	173, 205, 324, 677, 710
Bse1I	ACTGG	2 cut(s)	420, 512
BseBI	CCWGG	2 cut(s)	309, 477
BseDI	CCNNGG	3 cut(s)	47, 438, 709
BseGI	GGATG	3 cut(s)	433, 698, 799
BseLI	CCNNNNNNNGG	5 cut(s)	173, 205, 324, 677, 710
BseMII	CTCAG	2 cut(s)	145, 591
BseNI	ACTGG	2 cut(s)	420, 512
BseRI	GAGGAG	4 cut(s)	34, 67, 70, 109
BseX3I	CGGCCG	1 cut(s)	109
BseXI	GCAGC	2 cut(s)	257, 644
BseYI	CCCAGC	2 cut(s)	317, 588
BsgI	GTGCAG	1 cut(s)	628
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	4 cut(s)	55, 65, 111, 443
BshNI	GGYRCC	2 cut(s)	525, 772
BsiEI	CGRYCG	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	449
BslFI	GGGAC	1 cut(s)	762
BslI	CCNNNNNNNGG	5 cut(s)	173, 205, 324, 677, 710
BsmAI	GTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	762
BsmI	GAATGC	1 cut(s)	660
BsnI	GGCC	4 cut(s)	55, 65, 111, 443
BsoBI	CYCGRG	1 cut(s)	449
Bsp143I	GATC	4 cut(s)	134, 457, 583, 738
Bsp1720I	GCTNAGC	1 cut(s)	407
Bsp19I	CCATGG	3 cut(s)	47, 438, 709
BspACI	CCGC	6 cut(s)	14, 66, 72, 325, 354, 742
BspANI	GGCC	4 cut(s)	55, 65, 111, 443
BspCNI	CTCAG	2 cut(s)	144, 592
BspLI	GGNNCC	5 cut(s)	527, 715, 740, 750, 774
BspPI	GGATC	4 cut(s)	129, 578, 733, 746
BspT107I	GGYRCC	2 cut(s)	525, 772
BsrI	ACTGG	2 cut(s)	420, 512
BssECI	CCNNGG	3 cut(s)	47, 438, 709
BssMI	GATC	4 cut(s)	134, 457, 583, 738
BssNI	GRCGYC	1 cut(s)	526
BssT1I	CCWWGG	3 cut(s)	47, 438, 709
Bst2UI	CCWGG	2 cut(s)	309, 477
Bst4CI	ACNGT	3 cut(s)	241, 487, 493
Bst6I	CTCTTC	1 cut(s)	582
BstACI	GRCGYC	1 cut(s)	526
BstC8I	GCNNGC	3 cut(s)	323, 327, 552
BstDEI	CTNAG	3 cut(s)	131, 407, 600
BstDSI	CCRYGG	3 cut(s)	47, 438, 709
BstEII	GGTNACC	1 cut(s)	311
BstENI	CCTNNNNNAGG	1 cut(s)	171
BstF5I	GGATG	3 cut(s)	433, 698, 799
BstH2I	RGCGCY	1 cut(s)	529
BstHHI	GCGC	1 cut(s)	528
BstKTI	GATC	4 cut(s)	137, 460, 586, 741
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	4 cut(s)	134, 457, 583, 738
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 71, 508
BstNI	CCWGG	2 cut(s)	309, 477
BstNSI	RCATGY	1 cut(s)	415
BstPI	GGTNACC	1 cut(s)	311
BstSCI	CCNGG	2 cut(s)	307, 475
BstV1I	GCAGC	2 cut(s)	257, 644
BstV2I	GAAGAC	1 cut(s)	508
BstX2I	RGATCY	2 cut(s)	134, 738
BstYI	RGATCY	2 cut(s)	134, 738
BstZI	CGGCCG	1 cut(s)	109
BsuRI	GGCC	4 cut(s)	55, 65, 111, 443
BtgI	CCRYGG	3 cut(s)	47, 438, 709
BtsCI	GGATG	3 cut(s)	433, 698, 799
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	3 cut(s)	323, 327, 552
CfoI	GCGC	1 cut(s)	528
Cfr13I	GGNCC	2 cut(s)	54, 749
CseI	GACGC	1 cut(s)	30
CsiI	ACCWGGT	1 cut(s)	475
Csp6I	GTAC	1 cut(s)	773
CviAII	CATG	6 cut(s)	48, 293, 412, 439, 705, 710
CviQI	GTAC	1 cut(s)	773
DdeI	CTNAG	3 cut(s)	131, 407, 600
DinI	GGCGCC	1 cut(s)	527
DpnI	GATC	4 cut(s)	136, 459, 585, 740
DpnII	GATC	4 cut(s)	134, 457, 583, 738
EaeI	YGGCCR	1 cut(s)	109
EagI	CGGCCG	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
EclXI	CGGCCG	1 cut(s)	109
Eco130I	CCWWGG	3 cut(s)	47, 438, 709
Eco32I	GATATC	1 cut(s)	544
Eco47I	GGWCC	1 cut(s)	749
Eco52I	CGGCCG	1 cut(s)	109
Eco88I	CYCGRG	1 cut(s)	449
Eco91I	GGTNACC	1 cut(s)	311
EcoNI	CCTNNNNNAGG	1 cut(s)	171
EcoO65I	GGTNACC	1 cut(s)	311
EcoRII	CCWGG	2 cut(s)	307, 475
EcoRV	GATATC	1 cut(s)	544
EcoT14I	CCWWGG	3 cut(s)	47, 438, 709
EgeI	GGCGCC	1 cut(s)	527
EheI	GGCGCC	1 cut(s)	527
ErhI	CCWWGG	3 cut(s)	47, 438, 709
FaeI	CATG	6 cut(s)	51, 296, 415, 442, 708, 713
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FaqI	GGGAC	1 cut(s)	762
FatI	CATG	6 cut(s)	47, 292, 411, 438, 704, 709
FauI	CCCGC	1 cut(s)	318
Fnu4HI	GCNGC	4 cut(s)	15, 66, 246, 658
FokI	GGATG	3 cut(s)	440, 705, 806
Fsp4HI	GCNGC	4 cut(s)	15, 66, 246, 658
GlaI	GCGC	1 cut(s)	527
GluI	GCNGC	4 cut(s)	15, 66, 246, 658
GsaI	CCCAGC	2 cut(s)	321, 592
GsuI	CTGGAG	2 cut(s)	291, 448
HaeII	RGCGCY	1 cut(s)	529
HaeIII	GGCC	4 cut(s)	55, 65, 111, 443
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	1 cut(s)	528
Hin1I	GRCGYC	1 cut(s)	526
Hin1II	CATG	6 cut(s)	51, 296, 415, 442, 708, 713
Hin6I	GCGC	1 cut(s)	526
HinP1I	GCGC	1 cut(s)	526
HinfI	GANTC	5 cut(s)	97, 116, 188, 256, 379
HphI	GGTGA	2 cut(s)	323, 692
Hpy188I	TCNGA	5 cut(s)	96, 124, 134, 187, 378
Hpy188III	TCNNGA	4 cut(s)	171, 224, 581, 732
Hpy99I	CGWCG	2 cut(s)	46, 110
HpyAV	CCTTC	4 cut(s)	177, 199, 729, 796
HpyCH4III	ACNGT	3 cut(s)	241, 487, 493
HpyCH4V	TGCA	3 cut(s)	482, 645, 660
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 71, 508
HpyF3I	CTNAG	3 cut(s)	131, 407, 600
Hsp92I	GRCGYC	1 cut(s)	526
Hsp92II	CATG	6 cut(s)	51, 296, 415, 442, 708, 713
HspAI	GCGC	1 cut(s)	526
KasI	GGCGCC	1 cut(s)	525
KpnI	GGTACC	1 cut(s)	776
Kzo9I	GATC	4 cut(s)	134, 457, 583, 738
Lsp1109I	GCAGC	2 cut(s)	257, 644
LweI	GCATC	1 cut(s)	586
MabI	ACCWGGT	1 cut(s)	475
MaeIII	GTNAC	5 cut(s)	113, 299, 311, 487, 680
MalI	GATC	4 cut(s)	136, 459, 585, 740
MboI	GATC	4 cut(s)	134, 457, 583, 738
MboII	GAAGA	3 cut(s)	155, 508, 569
MflI	RGATCY	2 cut(s)	134, 738
MluCI	AATT	2 cut(s)	214, 571
Mly113I	GGCGCC	1 cut(s)	526
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	260
MseI	TTAA	3 cut(s)	252, 570, 817
MslI	CAYNNNNRTG	1 cut(s)	723
MspA1I	CMGCKG	1 cut(s)	248
MspR9I	CCNGG	2 cut(s)	309, 477
Mva1269I	GAATGC	1 cut(s)	660
MvaI	CCWGG	2 cut(s)	309, 477
MwoI	GCNNNNNNNGC	3 cut(s)	52, 71, 508
NarI	GGCGCC	1 cut(s)	526
NcoI	CCATGG	3 cut(s)	47, 438, 709
NdeII	GATC	4 cut(s)	134, 457, 583, 738
NlaIII	CATG	6 cut(s)	51, 296, 415, 442, 708, 713
NlaIV	GGNNCC	5 cut(s)	527, 715, 740, 750, 774
NmuCI	GTSAC	4 cut(s)	113, 311, 487, 680
NspI	RCATGY	1 cut(s)	415
PaeR7I	CTCGAG	1 cut(s)	449
PctI	GAATGC	1 cut(s)	660
PfeI	GAWTC	4 cut(s)	97, 188, 256, 379
PflMI	CCANNNNNTGG	2 cut(s)	677, 710
PkrI	GCNGC	4 cut(s)	16, 67, 247, 659
PleI	GAGTC	1 cut(s)	110
PluTI	GGCGCC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	307, 475
PspEI	GGTNACC	1 cut(s)	311
PspFI	CCCAGC	2 cut(s)	317, 588
PspGI	CCWGG	2 cut(s)	307, 475
PspN4I	GGNNCC	5 cut(s)	527, 715, 740, 750, 774
PspPI	GGNCC	2 cut(s)	54, 749
PspXI	VCTCGAGB	1 cut(s)	449
PsuI	RGATCY	2 cut(s)	134, 738
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	1 cut(s)	774
RsaNI	GTAC	1 cut(s)	773
RseI	CAYNNNNRTG	1 cut(s)	723
SaqAI	TTAA	3 cut(s)	252, 570, 817
SatI	GCNGC	4 cut(s)	15, 66, 246, 658
Sau3AI	GATC	4 cut(s)	134, 457, 583, 738
Sau96I	GGNCC	2 cut(s)	54, 749
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	309, 477
SexAI	ACCWGGT	1 cut(s)	475
SfaNI	GCATC	1 cut(s)	586
SfoI	GGCGCC	1 cut(s)	527
Sfr274I	CTCGAG	1 cut(s)	449
SinI	GGWCC	1 cut(s)	749
SlaI	CTCGAG	1 cut(s)	449
SmiMI	CAYNNNNRTG	1 cut(s)	723
SmlI	CTYRAG	2 cut(s)	395, 449
SmoI	CTYRAG	2 cut(s)	395, 449
Sse9I	AATT	2 cut(s)	214, 571
SsiI	CCGC	6 cut(s)	14, 66, 72, 325, 354, 742
SspDI	GGCGCC	1 cut(s)	525
StyD4I	CCNGG	2 cut(s)	307, 475
StyI	CCWWGG	3 cut(s)	47, 438, 709
TaaI	ACNGT	3 cut(s)	241, 487, 493
TaqI	TCGA	3 cut(s)	105, 203, 450
TasI	AATT	2 cut(s)	214, 571
TauI	GCSGC	2 cut(s)	17, 68
TfiI	GAWTC	4 cut(s)	97, 188, 256, 379
Tru1I	TTAA	3 cut(s)	252, 570, 817
Tru9I	TTAA	3 cut(s)	252, 570, 817
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	4 cut(s)	113, 311, 487, 680
TseI	GCWGC	2 cut(s)	245, 657
Tsp45I	GTSAC	4 cut(s)	113, 311, 487, 680
TspDTI	ATGAA	1 cut(s)	508
TspRI	CASTG	1 cut(s)	198
Van91I	CCANNNNNTGG	2 cut(s)	677, 710
VpaK11BI	GGWCC	1 cut(s)	749
XagI	CCTNNNNNAGG	1 cut(s)	171
XceI	RCATGY	1 cut(s)	415
XhoI	CTCGAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.