Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Forward (+)

9967787 .. 9970023

Gene Structure 2237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1131100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGCTGAGAGTCGCGGGAAGAAGGCTGTCATCTTCTGCTGCGGCGTGGCGGTCGTCGTCGCAGACCGCCCCCGCCTTCGTCTCCCGAGGATCTCATCTGCTTTTCATTACCAACAACAGTGACGACGACTCTTCCTCCGATTTCGCTTCCAGATCCCCCGCTCCCTTTTTCCTCAATTCCAAAATTCCATCTCTCGTCAGAGGATTTTCCTCTGAAGCCCTCGCTCCCGGAAATGATATTGGTATTTTCTCAGACGTCCCAGCTACTGTGGCAGCTGTGAAGAATCCTTCTTCAAAAATTGTGTACGATGAGTACAACCATGAAAGGTATCCACCCGGTGACCCCAGCAAGCGTGCATTTGCTTATTTCATCTTGACAGGAGGCAGATTCGTGTATGCCTCCTTGATCCGGCTTCTCATCCTCAAGTTTGTACTGAGCATGTCTGCCAGTAAAGATGTTCTTGCCCTTGCTTCCCTTGAGGTTGACCTGTCCAATGTTCAGTCCCTTCGTGATCCCCAACAGGATGCAGAGAGGGTTACAAATCCAGAATGGCTTATTGTTGTCGGAGTCTGCACTCACTTAGGGTGCATCCCCTTGCCGAATGCTGGTGATTTTGGTGGTTGGTTCTGCCCATGCCATGGTTCGCACTACGACATTTCTGGCAGGATCCGCAAGGGGCCAGCACCATTCAATCTAGAGGTACCCACTTACAGTTTTTTGGCCGAGAACAAGCTACTCATCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0006091 GO:0006950 GO:0008121 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016679 GO:0016681 GO:0019866 GO:0022900 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046872 GO:0050896 GO:0055114 GO:0070069 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

249

Amino Acids

26.9

Weight (kDa)

7.7

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_TM	PF02921	114 - 152	3.4e-08	Ubiquinol cytochrome reductase transmembrane region
Rieske	PF00355	181 - 232	1.4e-07	Rieske [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
Acc65I	GGTACC	1 cut(s)	700
AccB1I	GGYRCC	1 cut(s)	700
AccB7I	CCANNNNNTGG	1 cut(s)	638
AccBSI	CCGCTC	1 cut(s)	161
AccII	CGCG	1 cut(s)	14
AciI	CCGC	7 cut(s)	14, 41, 49, 66, 72, 159, 670
AclWI	GGATC	6 cut(s)	97, 147, 400, 506, 661, 674
AcoI	YGGCCR	1 cut(s)	720
AcsI	RAATTY	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	234
AcyI	GRCGYC	1 cut(s)	255
AdeI	CACNNNGTG	1 cut(s)	338
AfaI	GTAC	4 cut(s)	305, 314, 432, 702
AfiI	CCNNNNNNNGG	3 cut(s)	408, 605, 638
AgsI	TTSAA	2 cut(s)	294, 691
AluBI	AGCT	3 cut(s)	263, 275, 733
AluI	AGCT	3 cut(s)	263, 275, 733
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	6 cut(s)	97, 147, 400, 506, 661, 674
AlwNI	CAGNNNCTG	1 cut(s)	266
Ama87I	CYCGRG	1 cut(s)	84
AoxI	GGCC	2 cut(s)	677, 720
ApeKI	GCWGC	2 cut(s)	38, 272
ApoI	RAATTY	1 cut(s)	183
Asp718I	GGTACC	1 cut(s)	700
AspS9I	GGNCC	1 cut(s)	677
AsuC2I	CCSGG	2 cut(s)	228, 336
AsuHPI	GGTGA	2 cut(s)	350, 620
AvaI	CYCGRG	1 cut(s)	84
BamHI	GGATCC	1 cut(s)	666
BanI	GGYRCC	1 cut(s)	700
BbvI	GCAGC	2 cut(s)	25, 284
BccI	CCATC	1 cut(s)	196
BciVI	GTATCC	1 cut(s)	339
BcnI	CCSGG	2 cut(s)	228, 336
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	695
BfuI	GTATCC	1 cut(s)	339
BisI	GCNGC	3 cut(s)	39, 42, 273
BlsI	GCNGC	3 cut(s)	40, 43, 274
Bme1390I	CCNGG	2 cut(s)	228, 336
BmeT110I	CYCGRG	1 cut(s)	84
BmgT120I	GGNCC	1 cut(s)	677
BmiI	GGNNCC	3 cut(s)	668, 678, 702
BmrFI	CCNGG	2 cut(s)	228, 336
BmsI	GCATC	2 cut(s)	514, 597
BpuEI	CTTGAG	2 cut(s)	407, 497
BpuMI	CCSGG	2 cut(s)	228, 336
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	85, 637
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	3 cut(s)	408, 605, 638
Bse1I	ACTGG	1 cut(s)	447
BseDI	CCNNGG	2 cut(s)	85, 637
BseGI	GGATG	3 cut(s)	417, 529, 588
BseLI	CCNNNNNNNGG	3 cut(s)	408, 605, 638
BseMII	CTCAG	2 cut(s)	264, 425
BseNI	ACTGG	1 cut(s)	447
BseXI	GCAGC	2 cut(s)	25, 284
BseYI	CCCAGC	2 cut(s)	259, 344
BsgI	GTGCAG	1 cut(s)	556
Bsh1236I	CGCG	1 cut(s)	14
Bsh1285I	CGRYCG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	679, 722
BshNI	GGYRCC	1 cut(s)	700
BsiEI	CGRYCG	1 cut(s)	53
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	3 cut(s)	228, 336, 409
BslFI	GGGAC	2 cut(s)	242, 487
BslI	CCNNNNNNNGG	3 cut(s)	408, 605, 638
BsmAI	GTCTC	1 cut(s)	85
BsmBI	CGTCTC	1 cut(s)	85
BsmFI	GGGAC	2 cut(s)	242, 487
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	2 cut(s)	679, 722
BsoBI	CYCGRG	1 cut(s)	84
Bsp143I	GATC	5 cut(s)	89, 152, 405, 511, 666
Bsp19I	CCATGG	1 cut(s)	637
BspACI	CCGC	7 cut(s)	14, 41, 49, 66, 72, 159, 670
BspANI	GGCC	2 cut(s)	679, 722
BspCNI	CTCAG	2 cut(s)	263, 426
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	3 cut(s)	668, 678, 702
BspPI	GGATC	6 cut(s)	97, 147, 400, 506, 661, 674
BspT107I	GGYRCC	1 cut(s)	700
BsrBI	CCGCTC	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	447
BssECI	CCNNGG	2 cut(s)	85, 637
BssMI	GATC	5 cut(s)	89, 152, 405, 511, 666
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	637
Bst4CI	ACNGT	3 cut(s)	119, 268, 713
Bst6I	CTCTTC	1 cut(s)	136
BstACI	GRCGYC	1 cut(s)	255
BstC8I	GCNNGC	3 cut(s)	350, 354, 681
BstDEI	CTNAG	4 cut(s)	5, 250, 434, 580
BstDSI	CCRYGG	1 cut(s)	637
BstEII	GGTNACC	1 cut(s)	338
BstF5I	GGATG	3 cut(s)	417, 529, 588
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	5 cut(s)	92, 155, 408, 514, 669
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	5 cut(s)	89, 152, 405, 511, 666
BstMCI	CGRYCG	1 cut(s)	53
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 669
BstNSI	RCATGY	1 cut(s)	442
BstPI	GGTNACC	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	226, 334
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	25, 284
BstX2I	RGATCY	3 cut(s)	89, 152, 666
BstYI	RGATCY	3 cut(s)	89, 152, 666
BsuI	GTATCC	1 cut(s)	339
BsuRI	GGCC	2 cut(s)	679, 722
BtgI	CCRYGG	1 cut(s)	637
BtsCI	GGATG	3 cut(s)	417, 529, 588
BtsIMutI	CAGTG	1 cut(s)	124
Cac8I	GCNNGC	3 cut(s)	350, 354, 681
CaiI	CAGNNNCTG	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	677
Csp6I	GTAC	4 cut(s)	304, 313, 431, 701
CviAII	CATG	4 cut(s)	320, 439, 633, 638
CviJI	RGCY	9 cut(s)	25, 218, 263, 275, 412, 553, 679, 722, 733
CviKI_1	RGCY	9 cut(s)	25, 218, 263, 275, 412, 553, 679, 722, 733
CviQI	GTAC	4 cut(s)	304, 313, 431, 701
DdeI	CTNAG	4 cut(s)	5, 250, 434, 580
DpnI	GATC	5 cut(s)	91, 154, 407, 513, 668
DpnII	GATC	5 cut(s)	89, 152, 405, 511, 666
DraIII	CACNNNGTG	1 cut(s)	338
EaeI	YGGCCR	1 cut(s)	720
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	84
Eco91I	GGTNACC	1 cut(s)	338
EcoO65I	GGTNACC	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	637
ErhI	CCWWGG	1 cut(s)	637
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	4 cut(s)	323, 442, 636, 641
FaiI	YATR	5 cut(s)	321, 396, 440, 634, 639
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FaqI	GGGAC	2 cut(s)	242, 487
FatI	CATG	4 cut(s)	319, 438, 632, 637
FauI	CCCGC	3 cut(s)	7, 79, 166
Fnu4HI	GCNGC	3 cut(s)	39, 42, 273
FokI	GGATG	3 cut(s)	404, 536, 575
Fsp4HI	GCNGC	3 cut(s)	39, 42, 273
FspBI	CTAG	1 cut(s)	695
GluI	GCNGC	3 cut(s)	39, 42, 273
GsaI	CCCAGC	2 cut(s)	263, 348
HaeIII	GGCC	2 cut(s)	679, 722
HapII	CCGG	3 cut(s)	228, 336, 409
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	4 cut(s)	323, 442, 636, 641
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	5 cut(s)	9, 128, 283, 387, 567
HpaII	CCGG	3 cut(s)	228, 336, 409
HphI	GGTGA	2 cut(s)	350, 620
Hpy166II	GTNNAC	2 cut(s)	304, 484
Hpy188I	TCNGA	6 cut(s)	139, 200, 214, 253, 566, 743
Hpy188III	TCNNGA	6 cut(s)	84, 150, 373, 509, 545, 695
Hpy8I	GTNNAC	2 cut(s)	304, 484
Hpy99I	CGWCG	3 cut(s)	58, 61, 128
HpyAV	CCTTC	4 cut(s)	15, 85, 297, 515
HpyCH4III	ACNGT	3 cut(s)	119, 268, 713
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	4 cut(s)	356, 527, 573, 588
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 669
HpyF3I	CTNAG	4 cut(s)	5, 250, 434, 580
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	4 cut(s)	323, 442, 636, 641
KpnI	GGTACC	1 cut(s)	704
Kzo9I	GATC	5 cut(s)	89, 152, 405, 511, 666
LmnI	GCTCC	2 cut(s)	166, 229
Lsp1109I	GCAGC	2 cut(s)	25, 284
LweI	GCATC	2 cut(s)	514, 597
MaeI	CTAG	1 cut(s)	695
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	3 cut(s)	119, 338, 535
MalI	GATC	5 cut(s)	91, 154, 407, 513, 668
MbiI	CCGCTC	1 cut(s)	161
MboI	GATC	5 cut(s)	89, 152, 405, 511, 666
MboII	GAAGA	5 cut(s)	24, 30, 123, 282, 292
MflI	RGATCY	3 cut(s)	89, 152, 666
MluCI	AATT	3 cut(s)	175, 183, 297
MlyI	GAGTC	3 cut(s)	18, 122, 576
MmeI	TCCRAC	1 cut(s)	544
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	3 cut(s)	228, 336, 409
MspR9I	CCNGG	2 cut(s)	228, 336
Mva1269I	GAATGC	1 cut(s)	607
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	269, 669
NciI	CCSGG	2 cut(s)	228, 336
NcoI	CCATGG	1 cut(s)	637
NdeII	GATC	5 cut(s)	89, 152, 405, 511, 666
NlaIII	CATG	4 cut(s)	323, 442, 636, 641
NlaIV	GGNNCC	3 cut(s)	668, 678, 702
NmuCI	GTSAC	2 cut(s)	119, 338
NspI	RCATGY	1 cut(s)	442
PctI	GAATGC	1 cut(s)	607
PfeI	GAWTC	2 cut(s)	283, 387
PflMI	CCANNNNNTGG	1 cut(s)	638
PfoI	TCCNGGA	1 cut(s)	226
PkrI	GCNGC	3 cut(s)	40, 43, 274
PleI	GAGTC	3 cut(s)	17, 122, 575
PpsI	GAGTC	3 cut(s)	17, 122, 575
PspEI	GGTNACC	1 cut(s)	338
PspFI	CCCAGC	2 cut(s)	259, 344
PspN4I	GGNNCC	3 cut(s)	668, 678, 702
PspPI	GGNCC	1 cut(s)	677
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	3 cut(s)	89, 152, 666
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	4 cut(s)	305, 314, 432, 702
RsaNI	GTAC	4 cut(s)	304, 313, 431, 701
SatI	GCNGC	3 cut(s)	39, 42, 273
Sau3AI	GATC	5 cut(s)	89, 152, 405, 511, 666
Sau96I	GGNCC	1 cut(s)	677
SchI	GAGTC	3 cut(s)	18, 122, 576
ScrFI	CCNGG	2 cut(s)	228, 336
SetI	ASST	8 cut(s)	258, 265, 277, 329, 483, 489, 702, 735
SfaNI	GCATC	2 cut(s)	514, 597
SmlI	CTYRAG	2 cut(s)	422, 476
SmoI	CTYRAG	2 cut(s)	422, 476
Sse9I	AATT	3 cut(s)	175, 183, 297
SsiI	CCGC	7 cut(s)	14, 41, 49, 66, 72, 159, 670
SspMI	CTAG	1 cut(s)	695
StyD4I	CCNGG	2 cut(s)	226, 334
StyI	CCWWGG	1 cut(s)	637
TaaI	ACNGT	3 cut(s)	119, 268, 713
TaiI	ACGT	1 cut(s)	258
TasI	AATT	3 cut(s)	175, 183, 297
TatI	WGTACW	2 cut(s)	312, 430
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	2 cut(s)	283, 387
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	2 cut(s)	119, 338
TseI	GCWGC	2 cut(s)	38, 272
Tsp45I	GTSAC	2 cut(s)	119, 338
TspDTI	ATGAA	3 cut(s)	94, 336, 358
TspRI	CASTG	1 cut(s)	124
Van91I	CCANNNNNTGG	1 cut(s)	638
XapI	RAATTY	1 cut(s)	183
XbaI	TCTAGA	1 cut(s)	694
XceI	RCATGY	1 cut(s)	442
XspI	CTAG	1 cut(s)	695
ZraI	GACGTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.