Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013114.1

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1457

Gene Structure 1457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013114.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

gagtcgtcctccgatgtcccttccagatcccccatccaatctccatttctcatcagaggattttcctctgatgccctcgctcctggacatgattttggtggtatgatctcagatgtcccagctactgtggcagcagtgaagaatccttcttcaaagattgtatatgatgactacaaccatgaaagatacccacctggtgatcccagcaagcgtgcatttgcttattttgtcttgacaggtggaaggtttgtgtatgcatccttgatccggcttctggtcctcaagtttgttttgagcatgtctgccagcaaagatgtccttgctcttgcttccattgaggtcgacctatccagcattgagcctggcagtactgttactgtcaagtggagggggaagccagtttttattaggcgtagaactgaagatgacatcaagttggctaatagtattgatgttcagtcacttcgcgatcctcaacaggactcagagagggttaaggatccagaatggcttattgttgttggtgtctgcactcacttggggtgcatccccttgccaaatgctggtgactttggcggatggttttgcccatgccatggttcacactatgacatttctggtaggatccgcaaggggcctgcaccctacaatcttgaggtacccacttacagttttttgaccgagaacaagttactcattgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0006091 GO:0006950 GO:0008121 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016679 GO:0016681 GO:0019866 GO:0022900 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046872 GO:0050896 GO:0055114 GO:0070069 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

234

Amino Acids

25.66

Weight (kDa)

6.59

Isoelectric Point (pI)

60.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	658
AccB1I	GGYRCC	1 cut(s)	658
AccB7I	CCANNNNNTGG	2 cut(s)	563, 596
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	1 cut(s)	468
AciI	CCGC	2 cut(s)	576, 628
AclWI	GGATC	8 cut(s)	21, 194, 259, 464, 494, 507, 619, 632
AcuI	CTGAAG	1 cut(s)	441
AdeI	CACNNNGTG	1 cut(s)	197
AfaI	GTAC	2 cut(s)	370, 660
AfiI	CCNNNNNNNGG	4 cut(s)	267, 274, 563, 596
AgsI	TTSAA	1 cut(s)	153
AjnI	CCWGG	3 cut(s)	82, 193, 361
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
AlwI	GGATC	8 cut(s)	21, 194, 259, 464, 494, 507, 619, 632
AlwNI	CAGNNNCTG	1 cut(s)	125
AoxI	GGCC	1 cut(s)	635
ApeKI	GCWGC	1 cut(s)	131
Asp718I	GGTACC	1 cut(s)	658
AspS9I	GGNCC	2 cut(s)	277, 635
AsuHPI	GGTGA	2 cut(s)	209, 578
AvaII	GGWCC	1 cut(s)	277
BamHI	GGATCC	2 cut(s)	499, 624
BanI	GGYRCC	1 cut(s)	658
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	2 cut(s)	41, 573
BciT130I	CCWGG	3 cut(s)	84, 195, 363
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
BmcAI	AGTACT	1 cut(s)	370
Bme1390I	CCNGG	3 cut(s)	84, 195, 363
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	277, 635
BmiI	GGNNCC	4 cut(s)	501, 626, 636, 660
BmrFI	CCNGG	3 cut(s)	84, 195, 363
BmsI	GCATC	3 cut(s)	61, 266, 555
BplI	GAGNNNNNCTC	1 cut(s)	25
BpuEI	CTTGAG	2 cut(s)	266, 674
BsaJI	CCNNGG	1 cut(s)	595
Bsc4I	CCNNNNNNNGG	4 cut(s)	267, 274, 563, 596
Bse1I	ACTGG	1 cut(s)	398
BseBI	CCWGG	3 cut(s)	84, 195, 363
BseDI	CCNNGG	1 cut(s)	595
BseGI	GGATG	4 cut(s)	33, 257, 546, 584
BseLI	CCNNNNNNNGG	4 cut(s)	267, 274, 563, 596
BseMII	CTCAG	2 cut(s)	123, 498
BseNI	ACTGG	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	143
BseYI	CCCAGC	2 cut(s)	118, 203
BsgI	GTGCAG	2 cut(s)	514, 624
Bsh1236I	CGCG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	637
BshNI	GGYRCC	1 cut(s)	658
BsiSI	CCGG	1 cut(s)	268
BslFI	GGGAC	2 cut(s)	2, 101
BslI	CCNNNNNNNGG	4 cut(s)	267, 274, 563, 596
BsmFI	GGGAC	2 cut(s)	2, 101
BsnI	GGCC	1 cut(s)	637
Bsp143I	GATC	7 cut(s)	26, 105, 199, 264, 469, 499, 624
Bsp19I	CCATGG	1 cut(s)	595
Bsp68I	TCGCGA	1 cut(s)	468
BspACI	CCGC	2 cut(s)	576, 628
BspANI	GGCC	1 cut(s)	637
BspCNI	CTCAG	2 cut(s)	122, 497
BspFNI	CGCG	1 cut(s)	468
BspLI	GGNNCC	4 cut(s)	501, 626, 636, 660
BspPI	GGATC	8 cut(s)	21, 194, 259, 464, 494, 507, 619, 632
BspT107I	GGYRCC	1 cut(s)	658
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	1 cut(s)	595
BssMI	GATC	7 cut(s)	26, 105, 199, 264, 469, 499, 624
BssT1I	CCWWGG	1 cut(s)	595
Bst2UI	CCWGG	3 cut(s)	84, 195, 363
Bst4CI	ACNGT	4 cut(s)	127, 373, 379, 671
BstC8I	GCNNGC	4 cut(s)	209, 213, 307, 639
BstDEI	CTNAG	2 cut(s)	109, 484
BstDSI	CCRYGG	1 cut(s)	595
BstF5I	GGATG	4 cut(s)	33, 257, 546, 584
BstFNI	CGCG	1 cut(s)	468
BstKTI	GATC	7 cut(s)	29, 108, 202, 267, 472, 502, 627
BstMBI	GATC	7 cut(s)	26, 105, 199, 264, 469, 499, 624
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	3 cut(s)	84, 195, 363
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	3 cut(s)	82, 193, 361
BstUI	CGCG	1 cut(s)	468
BstV1I	GCAGC	1 cut(s)	143
BstX2I	RGATCY	3 cut(s)	26, 499, 624
BstYI	RGATCY	3 cut(s)	26, 499, 624
BsuRI	GGCC	1 cut(s)	637
BtgI	CCRYGG	1 cut(s)	595
BtsCI	GGATG	4 cut(s)	33, 257, 546, 584
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	141
BtuMI	TCGCGA	1 cut(s)	468
Cac8I	GCNNGC	4 cut(s)	209, 213, 307, 639
CaiI	CAGNNNCTG	1 cut(s)	125
Cfr13I	GGNCC	2 cut(s)	277, 635
CsiI	ACCWGGT	1 cut(s)	193
Csp6I	GTAC	2 cut(s)	369, 659
CviAII	CATG	5 cut(s)	89, 179, 298, 591, 596
CviJI	RGCY	7 cut(s)	122, 271, 361, 397, 440, 511, 637
CviKI_1	RGCY	7 cut(s)	122, 271, 361, 397, 440, 511, 637
CviQI	GTAC	2 cut(s)	369, 659
DdeI	CTNAG	2 cut(s)	109, 484
DpnI	GATC	7 cut(s)	28, 107, 201, 266, 471, 501, 626
DpnII	GATC	7 cut(s)	26, 105, 199, 264, 469, 499, 624
DraIII	CACNNNGTG	1 cut(s)	197
EciI	GGCGGA	1 cut(s)	591
Eco130I	CCWWGG	1 cut(s)	595
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	441
EcoO109I	RGGNCCY	1 cut(s)	635
EcoRII	CCWGG	3 cut(s)	82, 193, 361
EcoT14I	CCWWGG	1 cut(s)	595
EcoT22I	ATGCAT	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	595
FaeI	CATG	5 cut(s)	92, 182, 301, 594, 599
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FaqI	GGGAC	2 cut(s)	2, 101
FatI	CATG	5 cut(s)	88, 178, 297, 590, 595
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	4 cut(s)	20, 244, 533, 591
Fsp4HI	GCNGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	132
GsaI	CCCAGC	2 cut(s)	122, 207
HaeIII	GGCC	1 cut(s)	637
HapII	CCGG	1 cut(s)	268
Hin1II	CATG	5 cut(s)	92, 182, 301, 594, 599
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	3 cut(s)	2, 142, 482
HpaII	CCGG	1 cut(s)	268
HphI	GGTGA	2 cut(s)	209, 578
Hpy166II	GTNNAC	2 cut(s)	343, 602
Hpy188I	TCNGA	5 cut(s)	13, 56, 70, 112, 487
Hpy188III	TCNNGA	5 cut(s)	24, 232, 467, 503, 653
Hpy8I	GTNNAC	2 cut(s)	343, 602
HpyAV	CCTTC	3 cut(s)	30, 156, 237
HpyCH4III	ACNGT	4 cut(s)	127, 373, 379, 671
HpyCH4V	TGCA	5 cut(s)	215, 257, 531, 546, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	2 cut(s)	109, 484
Hsp92II	CATG	5 cut(s)	92, 182, 301, 594, 599
KpnI	GGTACC	1 cut(s)	662
Kzo9I	GATC	7 cut(s)	26, 105, 199, 264, 469, 499, 624
LmnI	GCTCC	1 cut(s)	85
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	3 cut(s)	61, 266, 555
MabI	ACCWGGT	1 cut(s)	193
MaeIII	GTNAC	4 cut(s)	373, 459, 566, 690
MalI	GATC	7 cut(s)	28, 107, 201, 266, 471, 501, 626
MboI	GATC	7 cut(s)	26, 105, 199, 264, 469, 499, 624
MboII	GAAGA	3 cut(s)	141, 151, 434
MflI	RGATCY	3 cut(s)	26, 499, 624
MlyI	GAGTC	2 cut(s)	11, 476
Mph1103I	ATGCAT	1 cut(s)	259
MseI	TTAA	1 cut(s)	495
MspI	CCGG	1 cut(s)	268
MspR9I	CCNGG	3 cut(s)	84, 195, 363
MvaI	CCWGG	3 cut(s)	84, 195, 363
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	1 cut(s)	128
NcoI	CCATGG	1 cut(s)	595
NdeII	GATC	7 cut(s)	26, 105, 199, 264, 469, 499, 624
NlaIII	CATG	5 cut(s)	92, 182, 301, 594, 599
NlaIV	GGNNCC	4 cut(s)	501, 626, 636, 660
NmuCI	GTSAC	2 cut(s)	459, 566
NruI	TCGCGA	1 cut(s)	468
NsiI	ATGCAT	1 cut(s)	259
NspI	RCATGY	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	142
PflMI	CCANNNNNTGG	2 cut(s)	563, 596
PfoI	TCCNGGA	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	2 cut(s)	10, 476
PpsI	GAGTC	2 cut(s)	10, 476
Psp6I	CCWGG	3 cut(s)	82, 193, 361
PspFI	CCCAGC	2 cut(s)	118, 203
PspGI	CCWGG	3 cut(s)	82, 193, 361
PspN4I	GGNNCC	4 cut(s)	501, 626, 636, 660
PspPI	GGNCC	2 cut(s)	277, 635
PstNI	CAGNNNCTG	1 cut(s)	125
PsuI	RGATCY	3 cut(s)	26, 499, 624
RruI	TCGCGA	1 cut(s)	468
RsaI	GTAC	2 cut(s)	370, 660
RsaNI	GTAC	2 cut(s)	369, 659
SalI	GTCGAC	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	7 cut(s)	26, 105, 199, 264, 469, 499, 624
Sau96I	GGNCC	2 cut(s)	277, 635
ScaI	AGTACT	1 cut(s)	370
SchI	GAGTC	2 cut(s)	11, 476
ScrFI	CCNGG	3 cut(s)	84, 195, 363
SetI	ASST	7 cut(s)	124, 196, 241, 248, 342, 348, 660
SexAI	ACCWGGT	1 cut(s)	193
SfaNI	GCATC	3 cut(s)	61, 266, 555
SinI	GGWCC	1 cut(s)	277
SmlI	CTYRAG	2 cut(s)	281, 653
SmoI	CTYRAG	2 cut(s)	281, 653
SsiI	CCGC	2 cut(s)	576, 628
StyD4I	CCNGG	3 cut(s)	82, 193, 361
StyI	CCWWGG	1 cut(s)	595
TaaI	ACNGT	4 cut(s)	127, 373, 379, 671
TaqI	TCGA	1 cut(s)	342
TaqII	GACCGA	1 cut(s)	695
TatI	WGTACW	1 cut(s)	368
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	2 cut(s)	459, 566
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	2 cut(s)	459, 566
TspDTI	ATGAA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	141
Van91I	CCANNNNNTGG	2 cut(s)	563, 596
VpaK11BI	GGWCC	1 cut(s)	277
XceI	RCATGY	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	342
ZrmI	AGTACT	1 cut(s)	370
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.