Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Forward (+)

160985 .. 162244

Gene Structure 1260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g00190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTTGAGGGTTGCGGCGAGGAGGCTCTCTTCTGTGTCCGCGTCGCCATGGAGGTCCAACCAGGCTGCCACCGCCTCCTCCTCTATCCTGTCCCGAAATCTCATCGACGGCCGTGACTTCTCTGATGAGCTCAGATCCGCCTATTTCACCCCTGACTTGCATCTTCCGTCCAGAGGTTTTGCGTCTGGTTCACTGACCCCTTCTGGGGACAACAATCTAGTTCCAGACGTTCCGCCAACTGTGGCAGCTGTCAAGAATCCTAGTTCAAAGATAGTTTATGACGAGTACAACCATGAGCGTTACCCTCCAGGTGACCCCAGCAAGCGTGCATTTGCCTACTTTGTCCTCACAGGTGGTAGGTTTGTCTATGCTTCTCTGATTCGTCTGCTTATCCTTAAGTTTGTGCTAAGCATGTCAGCCAGTAAGGATGTTCTTGCCATGGCCTCGCTCGAGGTTGATCTCTCGAGCATTGAGCCAGGTTCAACTGTGACTGTTAAGTGGCGTGGAAAGCCAGTCTTCATCAGACGCCGAACTGACGATGATATCAAGCTGGCAAATAGTGTAGATGTTAATTCTCTCCGCGATCCGCAGCAAGATGCTGAGAGGGTTAAAAACCCTGAATGGCTCATTGTTGTGGGAGTCTGCACGCATCTGGGTTGCATTCCCTTGCCGAATGCTGGTGACTTTGGTGGATGGTTTTGTCCATGCCATGGTTCCCACTATGATATTTCGGGAAGGATCCGCAAGGGACCAGCACCATACAATTTGGAGGTACCCACTTATTCCTTCTTGGAGGAGAACAAGTTACTGATTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

273

Amino Acids

29.9

Weight (kDa)

8.63

Isoelectric Point (pI)

50.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	772
AccB1I	GGYRCC	1 cut(s)	772
AccB7I	CCANNNNNTGG	1 cut(s)	710
AccII	CGCG	2 cut(s)	41, 582
AciI	CCGC	8 cut(s)	14, 39, 72, 138, 233, 580, 587, 742
AclWI	GGATC	4 cut(s)	129, 578, 733, 746
AcoI	YGGCCR	1 cut(s)	109
AcyI	GRCGYC	1 cut(s)	526
AfaI	GTAC	2 cut(s)	287, 774
AfiI	CCNNNNNNNGG	5 cut(s)	173, 204, 205, 677, 710
AflII	CTTAAG	1 cut(s)	395
AgsI	TTSAA	2 cut(s)	267, 483
AjnI	CCWGG	3 cut(s)	60, 307, 475
AluBI	AGCT	3 cut(s)	130, 248, 550
AluI	AGCT	3 cut(s)	130, 248, 550
Alw21I	GWGCWC	1 cut(s)	132
AlwI	GGATC	4 cut(s)	129, 578, 733, 746
Ama87I	CYCGRG	2 cut(s)	449, 463
AoxI	GGCC	2 cut(s)	109, 441
ApeKI	GCWGC	3 cut(s)	65, 245, 589
Asp718I	GGTACC	1 cut(s)	772
AspS9I	GGNCC	2 cut(s)	54, 749
AsuHPI	GGTGA	3 cut(s)	139, 323, 692
AvaI	CYCGRG	2 cut(s)	449, 463
AvaII	GGWCC	2 cut(s)	54, 749
BamHI	GGATCC	1 cut(s)	738
BanI	GGYRCC	1 cut(s)	772
BanII	GRGCYC	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	508
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	3 cut(s)	52, 257, 601
BccI	CCATC	1 cut(s)	687
BceAI	ACGGC	2 cut(s)	96, 124
BciT130I	CCWGG	3 cut(s)	62, 309, 477
BfaI	CTAG	2 cut(s)	218, 261
BfrI	CTTAAG	1 cut(s)	395
BisI	GCNGC	4 cut(s)	15, 66, 246, 590
BlpI	GCTNAGC	1 cut(s)	407
BlsI	GCNGC	4 cut(s)	16, 67, 247, 591
Bme1390I	CCNGG	3 cut(s)	62, 309, 477
Bme18I	GGWCC	2 cut(s)	54, 749
BmeT110I	CYCGRG	2 cut(s)	449, 463
BmgT120I	GGNCC	2 cut(s)	54, 749
BmiI	GGNNCC	4 cut(s)	715, 740, 750, 774
BmrFI	CCNGG	3 cut(s)	62, 309, 477
BmsI	GCATC	3 cut(s)	169, 586, 658
BpiI	GAAGAC	1 cut(s)	508
BpmI	CTGGAG	1 cut(s)	291
Bpu1102I	GCTNAGC	1 cut(s)	407
BsaHI	GRCGYC	1 cut(s)	526
BsaJI	CCNNGG	3 cut(s)	47, 438, 709
BsaXI	ACNNNNNCTCC	2 cut(s)	788, 818
Bsc4I	CCNNNNNNNGG	5 cut(s)	173, 204, 205, 677, 710
Bse1I	ACTGG	2 cut(s)	420, 512
BseBI	CCWGG	3 cut(s)	62, 309, 477
BseDI	CCNNGG	3 cut(s)	47, 438, 709
BseGI	GGATG	2 cut(s)	433, 698
BseLI	CCNNNNNNNGG	5 cut(s)	173, 204, 205, 677, 710
BseMII	CTCAG	2 cut(s)	145, 591
BseNI	ACTGG	2 cut(s)	420, 512
BseRI	GAGGAG	4 cut(s)	34, 67, 70, 809
BseX3I	CGGCCG	1 cut(s)	109
BseXI	GCAGC	3 cut(s)	52, 257, 601
BseYI	CCCAGC	1 cut(s)	317
BsgI	GTGCAG	1 cut(s)	628
Bsh1236I	CGCG	2 cut(s)	41, 582
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	111, 443
BshNI	GGYRCC	1 cut(s)	772
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	132
BsiHKCI	CYCGRG	2 cut(s)	449, 463
BslFI	GGGAC	3 cut(s)	76, 221, 762
BslI	CCNNNNNNNGG	5 cut(s)	173, 204, 205, 677, 710
BsmFI	GGGAC	3 cut(s)	76, 221, 762
BsmI	GAATGC	2 cut(s)	660, 679
BsnI	GGCC	2 cut(s)	111, 443
BsoBI	CYCGRG	2 cut(s)	449, 463
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	134, 457, 583, 738
Bsp1720I	GCTNAGC	1 cut(s)	407
Bsp19I	CCATGG	3 cut(s)	47, 438, 709
BspACI	CCGC	8 cut(s)	14, 39, 72, 138, 233, 580, 587, 742
BspANI	GGCC	2 cut(s)	111, 443
BspCNI	CTCAG	2 cut(s)	144, 592
BspFNI	CGCG	2 cut(s)	41, 582
BspLI	GGNNCC	4 cut(s)	715, 740, 750, 774
BspPI	GGATC	4 cut(s)	129, 578, 733, 746
BspT107I	GGYRCC	1 cut(s)	772
BspTI	CTTAAG	1 cut(s)	395
BsrI	ACTGG	2 cut(s)	420, 512
BssECI	CCNNGG	3 cut(s)	47, 438, 709
BssMI	GATC	4 cut(s)	134, 457, 583, 738
BssNI	GRCGYC	1 cut(s)	526
BssT1I	CCWWGG	3 cut(s)	47, 438, 709
Bst2UI	CCWGG	3 cut(s)	62, 309, 477
Bst4CI	ACNGT	3 cut(s)	241, 487, 493
Bst6I	CTCTTC	1 cut(s)	34
BstACI	GRCGYC	1 cut(s)	526
BstAFI	CTTAAG	1 cut(s)	395
BstC8I	GCNNGC	4 cut(s)	323, 327, 552, 647
BstDEI	CTNAG	3 cut(s)	131, 407, 600
BstDSI	CCRYGG	3 cut(s)	47, 438, 709
BstEII	GGTNACC	1 cut(s)	311
BstF5I	GGATG	2 cut(s)	433, 698
BstFNI	CGCG	2 cut(s)	41, 582
BstKTI	GATC	4 cut(s)	137, 460, 586, 741
BstMBI	GATC	4 cut(s)	134, 457, 583, 738
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 508
BstNI	CCWGG	3 cut(s)	62, 309, 477
BstNSI	RCATGY	1 cut(s)	415
BstPI	GGTNACC	1 cut(s)	311
BstSCI	CCNGG	3 cut(s)	60, 307, 475
BstUI	CGCG	2 cut(s)	41, 582
BstV1I	GCAGC	3 cut(s)	52, 257, 601
BstV2I	GAAGAC	1 cut(s)	508
BstX2I	RGATCY	2 cut(s)	134, 738
BstYI	RGATCY	2 cut(s)	134, 738
BstZI	CGGCCG	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	111, 443
BtgI	CCRYGG	3 cut(s)	47, 438, 709
BtsCI	GGATG	2 cut(s)	433, 698
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	4 cut(s)	323, 327, 552, 647
Cfr13I	GGNCC	2 cut(s)	54, 749
CseI	GACGC	3 cut(s)	30, 171, 534
Csp6I	GTAC	2 cut(s)	286, 773
CviAII	CATG	6 cut(s)	48, 293, 412, 439, 705, 710
CviQI	GTAC	2 cut(s)	286, 773
DdeI	CTNAG	3 cut(s)	131, 407, 600
DpnI	GATC	4 cut(s)	136, 459, 585, 740
DpnII	GATC	4 cut(s)	134, 457, 583, 738
EaeI	YGGCCR	1 cut(s)	109
EagI	CGGCCG	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
EciI	GGCGGA	2 cut(s)	127, 222
Ecl136II	GAGCTC	1 cut(s)	130
EclXI	CGGCCG	1 cut(s)	109
Eco130I	CCWWGG	3 cut(s)	47, 438, 709
Eco24I	GRGCYC	1 cut(s)	132
Eco32I	GATATC	1 cut(s)	544
Eco47I	GGWCC	2 cut(s)	54, 749
Eco52I	CGGCCG	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	130
Eco88I	CYCGRG	2 cut(s)	449, 463
Eco91I	GGTNACC	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	130
EcoO65I	GGTNACC	1 cut(s)	311
EcoRII	CCWGG	3 cut(s)	60, 307, 475
EcoRV	GATATC	1 cut(s)	544
EcoT14I	CCWWGG	3 cut(s)	47, 438, 709
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	3 cut(s)	47, 438, 709
FaeI	CATG	6 cut(s)	51, 296, 415, 442, 708, 713
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FaqI	GGGAC	3 cut(s)	76, 221, 762
FatI	CATG	6 cut(s)	47, 292, 411, 438, 704, 709
Fnu4HI	GCNGC	4 cut(s)	15, 66, 246, 590
FokI	GGATG	2 cut(s)	440, 705
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	4 cut(s)	15, 66, 246, 590
FspBI	CTAG	2 cut(s)	218, 261
GluI	GCNGC	4 cut(s)	15, 66, 246, 590
GsaI	CCCAGC	1 cut(s)	321
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	2 cut(s)	111, 443
HgaI	GACGC	3 cut(s)	30, 171, 534
Hin1I	GRCGYC	1 cut(s)	526
Hin1II	CATG	6 cut(s)	51, 296, 415, 442, 708, 713
HinfI	GANTC	3 cut(s)	256, 379, 639
HphI	GGTGA	3 cut(s)	139, 323, 692
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	4 cut(s)	124, 134, 378, 524
Hpy188III	TCNNGA	6 cut(s)	93, 171, 224, 253, 463, 732
Hpy8I	GTNNAC	1 cut(s)	191
Hpy99I	CGWCG	2 cut(s)	46, 110
HpyAV	CCTTC	3 cut(s)	210, 729, 796
HpyCH4III	ACNGT	3 cut(s)	241, 487, 493
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	4 cut(s)	160, 329, 645, 660
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 508
HpyF3I	CTNAG	3 cut(s)	131, 407, 600
HpySE526I	ACGT	1 cut(s)	228
Hsp92I	GRCGYC	1 cut(s)	526
Hsp92II	CATG	6 cut(s)	51, 296, 415, 442, 708, 713
KpnI	GGTACC	1 cut(s)	776
Kzo9I	GATC	4 cut(s)	134, 457, 583, 738
Lsp1109I	GCAGC	3 cut(s)	52, 257, 601
LweI	GCATC	3 cut(s)	169, 586, 658
MaeI	CTAG	2 cut(s)	218, 261
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	6 cut(s)	113, 299, 311, 487, 680, 804
MalI	GATC	4 cut(s)	136, 459, 585, 740
MboI	GATC	4 cut(s)	134, 457, 583, 738
MboII	GAAGA	3 cut(s)	21, 155, 508
MflI	RGATCY	2 cut(s)	134, 738
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	2 cut(s)	571, 763
MlyI	GAGTC	1 cut(s)	648
MmeI	TCCRAC	1 cut(s)	81
MseI	TTAA	4 cut(s)	396, 495, 570, 609
MslI	CAYNNNNRTG	1 cut(s)	632
MspA1I	CMGCKG	1 cut(s)	248
MspCI	CTTAAG	1 cut(s)	395
MspR9I	CCNGG	3 cut(s)	62, 309, 477
Mva1269I	GAATGC	2 cut(s)	660, 679
MvaI	CCWGG	3 cut(s)	62, 309, 477
MvnI	CGCG	2 cut(s)	41, 582
MwoI	GCNNNNNNNGC	2 cut(s)	71, 508
NcoI	CCATGG	3 cut(s)	47, 438, 709
NdeII	GATC	4 cut(s)	134, 457, 583, 738
NlaIII	CATG	6 cut(s)	51, 296, 415, 442, 708, 713
NlaIV	GGNNCC	4 cut(s)	715, 740, 750, 774
NmuCI	GTSAC	4 cut(s)	113, 311, 487, 680
NspI	RCATGY	1 cut(s)	415
PaeR7I	CTCGAG	2 cut(s)	449, 463
PctI	GAATGC	2 cut(s)	660, 679
PfeI	GAWTC	2 cut(s)	256, 379
PflMI	CCANNNNNTGG	1 cut(s)	710
PkrI	GCNGC	4 cut(s)	16, 67, 247, 591
PleI	GAGTC	1 cut(s)	647
PpsI	GAGTC	1 cut(s)	647
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	3 cut(s)	60, 307, 475
PspEI	GGTNACC	1 cut(s)	311
PspFI	CCCAGC	1 cut(s)	317
PspGI	CCWGG	3 cut(s)	60, 307, 475
PspN4I	GGNNCC	4 cut(s)	715, 740, 750, 774
PspPI	GGNCC	2 cut(s)	54, 749
PspXI	VCTCGAGB	1 cut(s)	449
PsuI	RGATCY	2 cut(s)	134, 738
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	2 cut(s)	287, 774
RsaNI	GTAC	2 cut(s)	286, 773
RseI	CAYNNNNRTG	1 cut(s)	632
SacI	GAGCTC	1 cut(s)	132
SaqAI	TTAA	4 cut(s)	396, 495, 570, 609
SatI	GCNGC	4 cut(s)	15, 66, 246, 590
Sau3AI	GATC	4 cut(s)	134, 457, 583, 738
Sau96I	GGNCC	2 cut(s)	54, 749
SchI	GAGTC	1 cut(s)	648
ScrFI	CCNGG	3 cut(s)	62, 309, 477
SduI	GDGCHC	1 cut(s)	132
SfaNI	GCATC	3 cut(s)	169, 586, 658
Sfr274I	CTCGAG	2 cut(s)	449, 463
SinI	GGWCC	2 cut(s)	54, 749
SlaI	CTCGAG	2 cut(s)	449, 463
SmiMI	CAYNNNNRTG	1 cut(s)	632
SmlI	CTYRAG	3 cut(s)	395, 449, 463
SmoI	CTYRAG	3 cut(s)	395, 449, 463
Sse9I	AATT	2 cut(s)	571, 763
SsiI	CCGC	8 cut(s)	14, 39, 72, 138, 233, 580, 587, 742
SspMI	CTAG	2 cut(s)	218, 261
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	3 cut(s)	60, 307, 475
StyI	CCWWGG	3 cut(s)	47, 438, 709
TaaI	ACNGT	3 cut(s)	241, 487, 493
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	3 cut(s)	105, 450, 464
TasI	AATT	2 cut(s)	571, 763
TatI	WGTACW	1 cut(s)	285
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	2 cut(s)	256, 379
Tru1I	TTAA	4 cut(s)	396, 495, 570, 609
Tru9I	TTAA	4 cut(s)	396, 495, 570, 609
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	4 cut(s)	113, 311, 487, 680
TseI	GCWGC	3 cut(s)	65, 245, 589
Tsp45I	GTSAC	4 cut(s)	113, 311, 487, 680
TspDTI	ATGAA	1 cut(s)	508
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	198
Van91I	CCANNNNNTGG	1 cut(s)	710
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	2 cut(s)	54, 749
XceI	RCATGY	1 cut(s)	415
XhoI	CTCGAG	2 cut(s)	449, 463
XspI	CTAG	2 cut(s)	218, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.