Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Forward (+)

13745068 .. 13746516

Gene Structure 1449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007121

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTTGCTCTGATTGTTTTCTTGCATTCAATCTTATTTCTATACGAGTTGTGGTTAATTTCATTAGCACAGTCGATACAACGACCGTGTGCGGCGGATTTTCCTCTGACGCCCTCGCTCCTGGACATGATGTTGGTGGTATGATCTCAGACGTCCCAGCTACTGTGGCAGCATTGAAGAATCCTTCATCAAAGATTGTATATGATGACTACAACCATGAAAGATACCCACCTGGTGATCCCAGCAAGCGTGCATTTGCTTATTTTGTCTTGACAGGTGGAAGGTTTGTGTATGCATCCTTGATCCGGCTTCTGGTCCTCAAGTTTGTTTTGAGCATGTCTGCCAGTAAAGATGTCCTTGCTCTTGCTTCCCTTGAGGTTGACCTATCCAGCATTGAGCCTGGCAGTACTGTTACTGTCAAGTGGAGGGGGAAGCCAGTTTTTATTAGGCGTAGAACTGAAGATGACATCAAGTTGGCTAATAGTATTGATGTTCAATCACTTCGTGATCCTCAACAGGACTCAGAGAGGGTTAAGGATCCAGAATGGCTTATTGTTGTTGGGGTCTGCACTCACTTAGGGTGCATCCCCTTGCCAAATGCTGGTGACTTTGGCGGATGGTTTTGCCCATGCCATGGTTCGCACTATGACATTTCTGGTAGGATCCGCAAGGGGCCTGCACCCTACAATCTTGAGGTACCCACTTACAGTTTTTTGACGGAGAACAAGTTACTCATTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0006091 GO:0006950 GO:0008121 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016679 GO:0016681 GO:0019866 GO:0022900 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046872 GO:0050896 GO:0055114 GO:0070069 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

248

Amino Acids

26.96

Weight (kDa)

6.2

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_TM	PF02921	80 - 118	1e-08	Ubiquinol cytochrome reductase transmembrane region
Rieske	PF00355	173 - 232	1.4e-08	Rieske [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	156
Acc65I	GGTACC	1 cut(s)	697
AccB1I	GGYRCC	1 cut(s)	697
AccB7I	CCANNNNNTGG	2 cut(s)	602, 635
AciI	CCGC	4 cut(s)	93, 96, 615, 667
AclWI	GGATC	7 cut(s)	233, 298, 503, 533, 546, 658, 671
AcuI	CTGAAG	1 cut(s)	480
AcyI	GRCGYC	2 cut(s)	111, 153
AdeI	CACNNNGTG	2 cut(s)	236, 506
AfaI	GTAC	2 cut(s)	409, 699
AfiI	CCNNNNNNNGG	4 cut(s)	306, 313, 602, 635
AgsI	TTSAA	3 cut(s)	31, 178, 497
AjnI	CCWGG	3 cut(s)	121, 232, 400
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
AlwI	GGATC	7 cut(s)	233, 298, 503, 533, 546, 658, 671
AlwNI	CAGNNNCTG	1 cut(s)	164
AoxI	GGCC	1 cut(s)	674
ApeKI	GCWGC	1 cut(s)	170
Asp718I	GGTACC	1 cut(s)	697
AspS9I	GGNCC	2 cut(s)	316, 674
AsuHPI	GGTGA	2 cut(s)	248, 617
AvaII	GGWCC	1 cut(s)	316
BamHI	GGATCC	2 cut(s)	538, 663
BanI	GGYRCC	1 cut(s)	697
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	1 cut(s)	612
BciT130I	CCWGG	3 cut(s)	123, 234, 402
BisI	GCNGC	2 cut(s)	94, 171
BlsI	GCNGC	2 cut(s)	95, 172
BmcAI	AGTACT	1 cut(s)	409
Bme1390I	CCNGG	3 cut(s)	123, 234, 402
Bme18I	GGWCC	1 cut(s)	316
BmgT120I	GGNCC	2 cut(s)	316, 674
BmiI	GGNNCC	4 cut(s)	540, 665, 675, 699
BmrFI	CCNGG	3 cut(s)	123, 234, 402
BmsI	GCATC	2 cut(s)	305, 594
BpuEI	CTTGAG	3 cut(s)	305, 395, 713
BsaHI	GRCGYC	2 cut(s)	111, 153
BsaJI	CCNNGG	1 cut(s)	634
BsaXI	ACNNNNNCTCC	2 cut(s)	713, 743
Bsc4I	CCNNNNNNNGG	4 cut(s)	306, 313, 602, 635
Bse1I	ACTGG	2 cut(s)	345, 437
BseBI	CCWGG	3 cut(s)	123, 234, 402
BseDI	CCNNGG	1 cut(s)	634
BseGI	GGATG	3 cut(s)	296, 585, 623
BseLI	CCNNNNNNNGG	4 cut(s)	306, 313, 602, 635
BseMII	CTCAG	2 cut(s)	162, 537
BseNI	ACTGG	2 cut(s)	345, 437
BseXI	GCAGC	1 cut(s)	182
BseYI	CCCAGC	2 cut(s)	157, 242
BsgI	GTGCAG	2 cut(s)	553, 663
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	676
BshNI	GGYRCC	1 cut(s)	697
BsiEI	CGRYCG	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	4 cut(s)	306, 313, 602, 635
BsmFI	GGGAC	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	676
Bsp143I	GATC	6 cut(s)	144, 238, 303, 508, 538, 663
Bsp19I	CCATGG	1 cut(s)	634
BspACI	CCGC	4 cut(s)	93, 96, 615, 667
BspANI	GGCC	1 cut(s)	676
BspCNI	CTCAG	2 cut(s)	161, 536
BspLI	GGNNCC	4 cut(s)	540, 665, 675, 699
BspPI	GGATC	7 cut(s)	233, 298, 503, 533, 546, 658, 671
BspT107I	GGYRCC	1 cut(s)	697
BsrI	ACTGG	2 cut(s)	345, 437
BssECI	CCNNGG	1 cut(s)	634
BssMI	GATC	6 cut(s)	144, 238, 303, 508, 538, 663
BssNI	GRCGYC	2 cut(s)	111, 153
BssT1I	CCWWGG	1 cut(s)	634
Bst2UI	CCWGG	3 cut(s)	123, 234, 402
Bst4CI	ACNGT	6 cut(s)	73, 88, 166, 412, 418, 710
BstACI	GRCGYC	2 cut(s)	111, 153
BstC8I	GCNNGC	4 cut(s)	7, 248, 252, 678
BstDEI	CTNAG	3 cut(s)	148, 523, 577
BstDSI	CCRYGG	1 cut(s)	634
BstF5I	GGATG	3 cut(s)	296, 585, 623
BstKTI	GATC	6 cut(s)	147, 241, 306, 511, 541, 666
BstMBI	GATC	6 cut(s)	144, 238, 303, 508, 538, 663
BstMCI	CGRYCG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	3 cut(s)	123, 234, 402
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	3 cut(s)	121, 232, 400
BstV1I	GCAGC	1 cut(s)	182
BstX2I	RGATCY	2 cut(s)	538, 663
BstYI	RGATCY	2 cut(s)	538, 663
BsuRI	GGCC	1 cut(s)	676
BtgI	CCRYGG	1 cut(s)	634
BtsCI	GGATG	3 cut(s)	296, 585, 623
Cac8I	GCNNGC	4 cut(s)	7, 248, 252, 678
CaiI	CAGNNNCTG	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	316, 674
CseI	GACGC	1 cut(s)	119
CsiI	ACCWGGT	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	408, 698
CviAII	CATG	5 cut(s)	128, 218, 337, 630, 635
CviJI	RGCY	8 cut(s)	5, 161, 310, 400, 436, 479, 550, 676
CviKI_1	RGCY	8 cut(s)	5, 161, 310, 400, 436, 479, 550, 676
CviQI	GTAC	2 cut(s)	408, 698
DdeI	CTNAG	3 cut(s)	148, 523, 577
DpnI	GATC	6 cut(s)	146, 240, 305, 510, 540, 665
DpnII	GATC	6 cut(s)	144, 238, 303, 508, 538, 663
DraIII	CACNNNGTG	2 cut(s)	236, 506
EciI	GGCGGA	2 cut(s)	111, 630
Eco130I	CCWWGG	1 cut(s)	634
Eco47I	GGWCC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	480
EcoO109I	RGGNCCY	1 cut(s)	674
EcoRII	CCWGG	3 cut(s)	121, 232, 400
EcoT14I	CCWWGG	1 cut(s)	634
EcoT22I	ATGCAT	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	634
FaeI	CATG	5 cut(s)	131, 221, 340, 633, 638
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	5 cut(s)	127, 217, 336, 629, 634
Fnu4HI	GCNGC	2 cut(s)	94, 171
FokI	GGATG	3 cut(s)	283, 572, 630
Fsp4HI	GCNGC	2 cut(s)	94, 171
GluI	GCNGC	2 cut(s)	94, 171
GsaI	CCCAGC	2 cut(s)	161, 246
HaeIII	GGCC	1 cut(s)	676
HapII	CCGG	1 cut(s)	307
HgaI	GACGC	1 cut(s)	119
Hin1I	GRCGYC	2 cut(s)	111, 153
Hin1II	CATG	5 cut(s)	131, 221, 340, 633, 638
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	2 cut(s)	181, 521
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	2 cut(s)	248, 617
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	4 cut(s)	13, 109, 151, 526
Hpy188III	TCNNGA	4 cut(s)	271, 506, 542, 692
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	2 cut(s)	195, 276
HpyCH4III	ACNGT	6 cut(s)	73, 88, 166, 412, 418, 710
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	6 cut(s)	26, 254, 296, 570, 585, 680
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	3 cut(s)	148, 523, 577
HpySE526I	ACGT	1 cut(s)	153
Hsp92I	GRCGYC	2 cut(s)	111, 153
Hsp92II	CATG	5 cut(s)	131, 221, 340, 633, 638
KpnI	GGTACC	1 cut(s)	701
Kzo9I	GATC	6 cut(s)	144, 238, 303, 508, 538, 663
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	2 cut(s)	305, 594
MabI	ACCWGGT	1 cut(s)	232
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	3 cut(s)	412, 605, 729
MalI	GATC	6 cut(s)	146, 240, 305, 510, 540, 665
MboI	GATC	6 cut(s)	144, 238, 303, 508, 538, 663
MboII	GAAGA	2 cut(s)	190, 473
MflI	RGATCY	2 cut(s)	538, 663
MluCI	AATT	1 cut(s)	58
MlyI	GAGTC	1 cut(s)	515
MnlI	CCTC	8 cut(s)	115, 125, 329, 370, 420, 522, 522, 688
Mph1103I	ATGCAT	1 cut(s)	298
MseI	TTAA	2 cut(s)	57, 534
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	3 cut(s)	123, 234, 402
Mva1269I	GAATGC	1 cut(s)	26
MvaI	CCWGG	3 cut(s)	123, 234, 402
MwoI	GCNNNNNNNGC	1 cut(s)	167
NcoI	CCATGG	1 cut(s)	634
NdeII	GATC	6 cut(s)	144, 238, 303, 508, 538, 663
NlaIII	CATG	5 cut(s)	131, 221, 340, 633, 638
NlaIV	GGNNCC	4 cut(s)	540, 665, 675, 699
NmuCI	GTSAC	1 cut(s)	605
NsiI	ATGCAT	1 cut(s)	298
NspI	RCATGY	1 cut(s)	340
PctI	GAATGC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	181
PflMI	CCANNNNNTGG	2 cut(s)	602, 635
PfoI	TCCNGGA	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	95, 172
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
Psp6I	CCWGG	3 cut(s)	121, 232, 400
PspFI	CCCAGC	2 cut(s)	157, 242
PspGI	CCWGG	3 cut(s)	121, 232, 400
PspN4I	GGNNCC	4 cut(s)	540, 665, 675, 699
PspPI	GGNCC	2 cut(s)	316, 674
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	2 cut(s)	538, 663
RsaI	GTAC	2 cut(s)	409, 699
RsaNI	GTAC	2 cut(s)	408, 698
SaqAI	TTAA	2 cut(s)	57, 534
SatI	GCNGC	2 cut(s)	94, 171
Sau3AI	GATC	6 cut(s)	144, 238, 303, 508, 538, 663
Sau96I	GGNCC	2 cut(s)	316, 674
ScaI	AGTACT	1 cut(s)	409
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	3 cut(s)	123, 234, 402
SetI	ASST	8 cut(s)	156, 163, 235, 280, 287, 381, 387, 699
SexAI	ACCWGGT	1 cut(s)	232
SfaNI	GCATC	2 cut(s)	305, 594
SinI	GGWCC	1 cut(s)	316
SmlI	CTYRAG	3 cut(s)	320, 374, 692
SmoI	CTYRAG	3 cut(s)	320, 374, 692
Sse9I	AATT	1 cut(s)	58
SsiI	CCGC	4 cut(s)	93, 96, 615, 667
StyD4I	CCNGG	3 cut(s)	121, 232, 400
StyI	CCWWGG	1 cut(s)	634
TaaI	ACNGT	6 cut(s)	73, 88, 166, 412, 418, 710
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	58
TatI	WGTACW	1 cut(s)	407
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	2 cut(s)	57, 534
Tru9I	TTAA	2 cut(s)	57, 534
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	3 cut(s)	52, 177, 234
TspGWI	ACGGA	1 cut(s)	734
Van91I	CCANNNNNTGG	2 cut(s)	602, 635
VpaK11BI	GGWCC	1 cut(s)	316
XceI	RCATGY	1 cut(s)	340
ZraI	GACGTC	1 cut(s)	154
ZrmI	AGTACT	1 cut(s)	409
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.