Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Reverse (-)

38365864 .. 38368533

Gene Structure 2670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1252000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAGGACAACAATCTAGTTCCAGACATTCCGCCAACTGTGGCAGCTGTCAAGAATCCTAGTTCAAAGGTAGTTTATGACGAGTACAACCATGAGCGTTACCCTCCAGGTGACCCCAGCAAGCATGCATTTGCCTACTTTGTTCTCACAGTTGGTAGGTTTGTCTATGCTTCTCTGATTCGTCTGCTTATCCTTAAGTTTGTGCTAAGCATATCAGCCAGTAAGGATGTTCTTGCTTCACTAGAAATCCCATATGAATCTCATAAATTTCCCTTCACTTGCCATGGCCTCGAGGTTGATCTCTCCAGCATTGAGTCAGGTTCAACTATGACTGTTAAGTGGCGTGGAAAGCCAGTCTTCATCAGACGCCGAACCGACGATGATATCAAGCTGGCAAATAGTGTAGATATTAATTCTCTTCGTGATCCGCAGCAAGATATTGAAAGGGTTAAAAACCCTGAATGGCTCATTGTTGTGGAAGTCTGCACGCATCTGGGTTGCATTCCCTTGTCGAATGCTGGTAACTTTGTCGGATGGTTTTGTCCATGCCATGGTTCCCACTATGATATTTCGGGAAGGATCTGCAAGGGACCATCACCATACAATTTGGAGGTACCCACTTATTCATTCTTAGAGGAGAACAAGTTACTGATTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

220

Amino Acids

24.61

Weight (kDa)

5.97

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_TM	PF02921	38 - 76	4.4e-06	Ubiquinol cytochrome reductase transmembrane region
Rieske	PF00355	149 - 203	8.4e-08	Rieske [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	290
Acc65I	GGTACC	1 cut(s)	613
AccB1I	GGYRCC	1 cut(s)	613
AccB7I	CCANNNNNTGG	1 cut(s)	551
AciI	CCGC	2 cut(s)	32, 428
AclWI	GGATC	2 cut(s)	419, 587
AcsI	RAATTY	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	367
AfaI	GTAC	2 cut(s)	86, 615
AfiI	CCNNNNNNNGG	1 cut(s)	551
AflII	CTTAAG	1 cut(s)	194
AgsI	TTSAA	3 cut(s)	66, 324, 443
AjnI	CCWGG	1 cut(s)	106
AluBI	AGCT	2 cut(s)	47, 391
AluI	AGCT	2 cut(s)	47, 391
AlwI	GGATC	2 cut(s)	419, 587
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	2 cut(s)	44, 430
ApoI	RAATTY	1 cut(s)	266
AseI	ATTAAT	1 cut(s)	411
Asp718I	GGTACC	1 cut(s)	613
AspS9I	GGNCC	1 cut(s)	590
AsuHPI	GGTGA	2 cut(s)	122, 588
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	590
BanI	GGYRCC	1 cut(s)	613
BbsI	GAAGAC	1 cut(s)	349
BbvI	GCAGC	2 cut(s)	56, 442
BccI	CCATC	2 cut(s)	528, 601
BciT130I	CCWGG	1 cut(s)	108
BfaI	CTAG	3 cut(s)	17, 60, 242
BfrI	CTTAAG	1 cut(s)	194
BisI	GCNGC	2 cut(s)	45, 431
BlpI	GCTNAGC	1 cut(s)	206
BlsI	GCNGC	2 cut(s)	46, 432
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	590
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	590
BmiI	GGNNCC	3 cut(s)	556, 591, 615
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	1 cut(s)	499
BpiI	GAAGAC	1 cut(s)	349
BpmI	CTGGAG	2 cut(s)	90, 289
Bpu1102I	GCTNAGC	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	367
BsaJI	CCNNGG	2 cut(s)	283, 550
BsaXI	ACNNNNNCTCC	2 cut(s)	629, 659
Bsc4I	CCNNNNNNNGG	1 cut(s)	551
Bse1I	ACTGG	2 cut(s)	219, 353
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	283, 550
BseGI	GGATG	2 cut(s)	232, 539
BseLI	CCNNNNNNNGG	1 cut(s)	551
BseNI	ACTGG	2 cut(s)	219, 353
BseRI	GAGGAG	1 cut(s)	650
BseXI	GCAGC	2 cut(s)	56, 442
BseYI	CCCAGC	1 cut(s)	116
BsgI	GTGCAG	1 cut(s)	469
BshFI	GGCC	1 cut(s)	288
BshNI	GGYRCC	1 cut(s)	613
BsiHKCI	CYCGRG	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	603
BslI	CCNNNNNNNGG	1 cut(s)	551
BsmFI	GGGAC	1 cut(s)	603
BsmI	GAATGC	2 cut(s)	501, 520
BsnI	GGCC	1 cut(s)	288
BsoBI	CYCGRG	1 cut(s)	290
Bsp143I	GATC	3 cut(s)	298, 424, 579
Bsp1720I	GCTNAGC	1 cut(s)	206
Bsp19I	CCATGG	2 cut(s)	283, 550
BspACI	CCGC	2 cut(s)	32, 428
BspANI	GGCC	1 cut(s)	288
BspLI	GGNNCC	3 cut(s)	556, 591, 615
BspPI	GGATC	2 cut(s)	419, 587
BspT107I	GGYRCC	1 cut(s)	613
BspTI	CTTAAG	1 cut(s)	194
BsrI	ACTGG	2 cut(s)	219, 353
BssECI	CCNNGG	2 cut(s)	283, 550
BssMI	GATC	3 cut(s)	298, 424, 579
BssNI	GRCGYC	1 cut(s)	367
BssT1I	CCWWGG	2 cut(s)	283, 550
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	3 cut(s)	40, 151, 334
Bst6I	CTCTTC	1 cut(s)	423
BstACI	GRCGYC	1 cut(s)	367
BstAFI	CTTAAG	1 cut(s)	194
BstC8I	GCNNGC	4 cut(s)	122, 126, 393, 488
BstDEI	CTNAG	2 cut(s)	206, 631
BstDSI	CCRYGG	2 cut(s)	283, 550
BstEII	GGTNACC	1 cut(s)	110
BstF5I	GGATG	2 cut(s)	232, 539
BstKTI	GATC	3 cut(s)	301, 427, 582
BstMBI	GATC	3 cut(s)	298, 424, 579
BstMWI	GCNNNNNNNGC	1 cut(s)	349
BstNI	CCWGG	1 cut(s)	108
BstNSI	RCATGY	1 cut(s)	128
BstPI	GGTNACC	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	106
BstV1I	GCAGC	2 cut(s)	56, 442
BstV2I	GAAGAC	1 cut(s)	349
BstX2I	RGATCY	1 cut(s)	579
BstYI	RGATCY	1 cut(s)	579
BsuRI	GGCC	1 cut(s)	288
BtgI	CCRYGG	2 cut(s)	283, 550
BtsCI	GGATG	2 cut(s)	232, 539
Cac8I	GCNNGC	4 cut(s)	122, 126, 393, 488
Cfr13I	GGNCC	1 cut(s)	590
CseI	GACGC	1 cut(s)	375
Csp6I	GTAC	2 cut(s)	85, 614
CviAII	CATG	5 cut(s)	92, 125, 284, 546, 551
CviJI	RGCY	6 cut(s)	47, 218, 288, 352, 391, 466
CviKI_1	RGCY	6 cut(s)	47, 218, 288, 352, 391, 466
CviQI	GTAC	2 cut(s)	85, 614
DdeI	CTNAG	2 cut(s)	206, 631
DpnI	GATC	3 cut(s)	300, 426, 581
DpnII	GATC	3 cut(s)	298, 424, 579
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
EciI	GGCGGA	1 cut(s)	21
Eco130I	CCWWGG	2 cut(s)	283, 550
Eco32I	GATATC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	590
Eco88I	CYCGRG	1 cut(s)	290
Eco91I	GGTNACC	1 cut(s)	110
EcoO65I	GGTNACC	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	106
EcoRV	GATATC	1 cut(s)	385
EcoT14I	CCWWGG	2 cut(s)	283, 550
EcoT22I	ATGCAT	1 cut(s)	130
ErhI	CCWWGG	2 cut(s)	283, 550
FaeI	CATG	5 cut(s)	95, 128, 287, 549, 554
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	1 cut(s)	603
FatI	CATG	5 cut(s)	91, 124, 283, 545, 550
FauNDI	CATATG	1 cut(s)	253
Fnu4HI	GCNGC	2 cut(s)	45, 431
FokI	GGATG	2 cut(s)	239, 546
Fsp4HI	GCNGC	2 cut(s)	45, 431
FspBI	CTAG	3 cut(s)	17, 60, 242
GluI	GCNGC	2 cut(s)	45, 431
GsaI	CCCAGC	1 cut(s)	120
GsuI	CTGGAG	2 cut(s)	90, 289
HaeIII	GGCC	1 cut(s)	288
HgaI	GACGC	1 cut(s)	375
Hin1I	GRCGYC	1 cut(s)	367
Hin1II	CATG	5 cut(s)	95, 128, 287, 549, 554
HinfI	GANTC	4 cut(s)	55, 178, 257, 314
HphI	GGTGA	2 cut(s)	122, 588
Hpy188I	TCNGA	3 cut(s)	177, 365, 533
Hpy188III	TCNNGA	4 cut(s)	23, 52, 422, 573
Hpy99I	CGWCG	1 cut(s)	380
HpyAV	CCTTC	2 cut(s)	283, 570
HpyCH4III	ACNGT	3 cut(s)	40, 151, 334
HpyCH4V	TGCA	4 cut(s)	128, 486, 501, 585
HpyF10VI	GCNNNNNNNGC	1 cut(s)	349
HpyF3I	CTNAG	2 cut(s)	206, 631
Hsp92I	GRCGYC	1 cut(s)	367
Hsp92II	CATG	5 cut(s)	95, 128, 287, 549, 554
KpnI	GGTACC	1 cut(s)	617
Kzo9I	GATC	3 cut(s)	298, 424, 579
Lsp1109I	GCAGC	2 cut(s)	56, 442
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	3 cut(s)	17, 60, 242
MaeIII	GTNAC	4 cut(s)	98, 110, 521, 645
MalI	GATC	3 cut(s)	300, 426, 581
MboI	GATC	3 cut(s)	298, 424, 579
MboII	GAAGA	2 cut(s)	349, 410
MflI	RGATCY	1 cut(s)	579
MluCI	AATT	3 cut(s)	266, 412, 604
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	511
MnlI	CCTC	5 cut(s)	114, 286, 299, 604, 628
Mph1103I	ATGCAT	1 cut(s)	130
MseI	TTAA	4 cut(s)	195, 336, 411, 450
MslI	CAYNNNNRTG	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	47
MspCI	CTTAAG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	108
Mva1269I	GAATGC	2 cut(s)	501, 520
MvaI	CCWGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	349
NcoI	CCATGG	2 cut(s)	283, 550
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	3 cut(s)	298, 424, 579
NlaIII	CATG	5 cut(s)	95, 128, 287, 549, 554
NlaIV	GGNNCC	3 cut(s)	556, 591, 615
NmuCI	GTSAC	1 cut(s)	110
NsiI	ATGCAT	1 cut(s)	130
NspI	RCATGY	1 cut(s)	128
PaeI	GCATGC	1 cut(s)	128
PaeR7I	CTCGAG	1 cut(s)	290
PctI	GAATGC	2 cut(s)	501, 520
PfeI	GAWTC	3 cut(s)	55, 178, 257
PflMI	CCANNNNNTGG	1 cut(s)	551
PkrI	GCNGC	2 cut(s)	46, 432
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PshBI	ATTAAT	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	106
PspEI	GGTNACC	1 cut(s)	110
PspFI	CCCAGC	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	3 cut(s)	556, 591, 615
PspPI	GGNCC	1 cut(s)	590
PspXI	VCTCGAGB	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	579
PvuII	CAGCTG	1 cut(s)	47
RsaI	GTAC	2 cut(s)	86, 615
RsaNI	GTAC	2 cut(s)	85, 614
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	4 cut(s)	195, 336, 411, 450
SatI	GCNGC	2 cut(s)	45, 431
Sau3AI	GATC	3 cut(s)	298, 424, 579
Sau96I	GGNCC	1 cut(s)	590
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	108
SetI	ASST	8 cut(s)	49, 72, 112, 161, 297, 322, 393, 615
SfaNI	GCATC	1 cut(s)	499
Sfr274I	CTCGAG	1 cut(s)	290
SinI	GGWCC	1 cut(s)	590
SlaI	CTCGAG	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	2 cut(s)	194, 290
SmoI	CTYRAG	2 cut(s)	194, 290
SphI	GCATGC	1 cut(s)	128
Sse9I	AATT	3 cut(s)	266, 412, 604
SsiI	CCGC	2 cut(s)	32, 428
SspMI	CTAG	3 cut(s)	17, 60, 242
StyD4I	CCNGG	1 cut(s)	106
StyI	CCWWGG	2 cut(s)	283, 550
TaaI	ACNGT	3 cut(s)	40, 151, 334
TaqI	TCGA	2 cut(s)	291, 512
TasI	AATT	3 cut(s)	266, 412, 604
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	3 cut(s)	55, 178, 257
Tru1I	TTAA	4 cut(s)	195, 336, 411, 450
Tru9I	TTAA	4 cut(s)	195, 336, 411, 450
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	2 cut(s)	44, 430
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	3 cut(s)	270, 349, 615
Van91I	CCANNNNNTGG	1 cut(s)	551
Vha464I	CTTAAG	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	590
VspI	ATTAAT	1 cut(s)	411
XapI	RAATTY	1 cut(s)	266
XceI	RCATGY	1 cut(s)	128
XhoI	CTCGAG	1 cut(s)	290
XspI	CTAG	3 cut(s)	17, 60, 242
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.