Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Reverse (-)

60053948 .. 60055628

Gene Structure 1681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG286300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCTGAGAGTCGCCGGAAGAAGGCTTTCCTCCTCTGTAGGCGGCGCGTGGAGGTCGTCGCAGACATCCCCAGTCTTTCTCTCTCGATCCCATCCACTTTCCTTCAACAACAACGACGAGTCGTCCTCCCACGTCCCTTCCAGATCCCCCATTCACTCTCTCCTCAATTCCCAATCTCCATTTCTCATCAGAGGATTTTCCTCTGACGCCCTCGCTCCTGGACATGATATTGGTGGTATGATCTCAGATGTCCCAGCTACTGTGGCAGCACTGAAGAATCCTTCTTCAAAGATTGTATATGATGACTACAACCATGAAAGATACCCACCTGGTGATCCCAGCAAGCGTGCATTTGCTTATTTTGTCTTGACAGGTGGAAGGTTTGTGTATGCATCCTTGATCCGGCTTCTGGTCCTCAAGTTTGTTTTGAGCATGTCTGCCAGCAAAGATGTCCTTGCTCTTGCTTCCCTTGAGGTTGACCTATCCAGCATTGAGCCTGGCAGTACTGTTACTGTCAAGTGGAGGGGGAAGCCAGTTTTTATTAGGCGTAGAACTGAAGATGACATCAAGTTGGCTAATAGTATTGATGTTCAGTCACTTCGTGATCCTCAACAGGACTCAGAGAGGGTTAAGGATCCAGAATGGCTTATTGTTGTTGGGGTCTGCACTCACTTGGGGTGCATCCCCTTGCCAAATGCTGGTGACTTTGGCGGATGGTTTTGCCCATGCCATGGTTCGCACTATGACATTTCTGGTAGGATCCGCAAGGGGCCTGCACCCTACAATCTTGAGGTACCCACTTACAGTTTTTTGACCGAGAACAAGTTACTCATTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0006091 GO:0006950 GO:0008121 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016679 GO:0016681 GO:0019866 GO:0022900 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046872 GO:0050896 GO:0055114 GO:0070069 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

279

Amino Acids

30.57

Weight (kDa)

8.87

Isoelectric Point (pI)

63.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_TM	PF02921	112 - 150	1.3e-08	Ubiquinol cytochrome reductase transmembrane region
Rieske	PF00355	205 - 264	1.8e-08	Rieske [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	793
AccB1I	GGYRCC	1 cut(s)	793
AccB7I	CCANNNNNTGG	2 cut(s)	698, 731
AccII	CGCG	1 cut(s)	47
AciI	CCGC	3 cut(s)	42, 711, 763
AclWI	GGATC	9 cut(s)	81, 138, 329, 394, 599, 629, 642, 754, 767
AcuI	CTGAAG	2 cut(s)	293, 576
AcyI	GRCGYC	1 cut(s)	207
AdeI	CACNNNGTG	2 cut(s)	332, 602
AfaI	GTAC	2 cut(s)	505, 795
AfiI	CCNNNNNNNGG	5 cut(s)	21, 402, 409, 698, 731
AgsI	TTSAA	2 cut(s)	106, 288
AhdI	GACNNNNNGTC	1 cut(s)	121
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	3 cut(s)	217, 328, 496
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
AlwI	GGATC	9 cut(s)	81, 138, 329, 394, 599, 629, 642, 754, 767
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	1 cut(s)	770
ApeKI	GCWGC	1 cut(s)	266
Asp700I	GAANNNNTTC	1 cut(s)	25
Asp718I	GGTACC	1 cut(s)	793
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	412, 770
AsuHPI	GGTGA	2 cut(s)	344, 713
AvaII	GGWCC	1 cut(s)	412
BamHI	GGATCC	2 cut(s)	634, 759
BanI	GGYRCC	1 cut(s)	793
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	2 cut(s)	99, 708
BciT130I	CCWGG	3 cut(s)	219, 330, 498
BfmI	CTRYAG	1 cut(s)	36
BisI	GCNGC	2 cut(s)	43, 267
BlsI	GCNGC	2 cut(s)	44, 268
BmcAI	AGTACT	1 cut(s)	505
Bme1390I	CCNGG	3 cut(s)	219, 330, 498
Bme18I	GGWCC	1 cut(s)	412
BmeRI	GACNNNNNGTC	1 cut(s)	121
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	2 cut(s)	412, 770
BmiI	GGNNCC	4 cut(s)	636, 761, 771, 795
BmrFI	CCNGG	3 cut(s)	219, 330, 498
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	2 cut(s)	401, 690
BmuI	ACTGGG	1 cut(s)	65
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
BpuEI	CTTGAG	3 cut(s)	401, 491, 809
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	730
Bsc4I	CCNNNNNNNGG	5 cut(s)	21, 402, 409, 698, 731
Bse1I	ACTGG	2 cut(s)	71, 533
BseBI	CCWGG	3 cut(s)	219, 330, 498
BseDI	CCNNGG	1 cut(s)	730
BseGI	GGATG	5 cut(s)	65, 91, 392, 681, 719
BseLI	CCNNNNNNNGG	5 cut(s)	21, 402, 409, 698, 731
BseMII	CTCAG	2 cut(s)	258, 633
BseNI	ACTGG	2 cut(s)	71, 533
BseRI	GAGGAG	2 cut(s)	22, 152
BseXI	GCAGC	1 cut(s)	278
BseYI	CCCAGC	2 cut(s)	253, 338
BsgI	GTGCAG	2 cut(s)	649, 759
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	772
BshNI	GGYRCC	1 cut(s)	793
BsiSI	CCGG	2 cut(s)	15, 403
BslFI	GGGAC	2 cut(s)	119, 236
BslI	CCNNNNNNNGG	5 cut(s)	21, 402, 409, 698, 731
BsmFI	GGGAC	2 cut(s)	119, 236
BsnI	GGCC	1 cut(s)	772
Bsp143I	GATC	8 cut(s)	86, 143, 240, 334, 399, 604, 634, 759
Bsp19I	CCATGG	1 cut(s)	730
BspACI	CCGC	3 cut(s)	42, 711, 763
BspANI	GGCC	1 cut(s)	772
BspCNI	CTCAG	2 cut(s)	257, 632
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	4 cut(s)	636, 761, 771, 795
BspPI	GGATC	9 cut(s)	81, 138, 329, 394, 599, 629, 642, 754, 767
BspT107I	GGYRCC	1 cut(s)	793
BsrI	ACTGG	2 cut(s)	71, 533
BssECI	CCNNGG	1 cut(s)	730
BssMI	GATC	8 cut(s)	86, 143, 240, 334, 399, 604, 634, 759
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	730
Bst2UI	CCWGG	3 cut(s)	219, 330, 498
Bst4CI	ACNGT	4 cut(s)	262, 508, 514, 806
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	4 cut(s)	344, 348, 442, 774
BstDEI	CTNAG	3 cut(s)	5, 244, 619
BstDSI	CCRYGG	1 cut(s)	730
BstF5I	GGATG	5 cut(s)	65, 91, 392, 681, 719
BstFNI	CGCG	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	8 cut(s)	89, 146, 243, 337, 402, 607, 637, 762
BstMBI	GATC	8 cut(s)	86, 143, 240, 334, 399, 604, 634, 759
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	3 cut(s)	219, 330, 498
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	3 cut(s)	217, 328, 496
BstSFI	CTRYAG	1 cut(s)	36
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	278
BstX2I	RGATCY	3 cut(s)	143, 634, 759
BstYI	RGATCY	3 cut(s)	143, 634, 759
BsuRI	GGCC	1 cut(s)	772
BtgI	CCRYGG	1 cut(s)	730
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	5 cut(s)	65, 91, 392, 681, 719
BtsIMutI	CAGTG	1 cut(s)	269
Cac8I	GCNNGC	4 cut(s)	344, 348, 442, 774
CaiI	CAGNNNCTG	1 cut(s)	260
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	412, 770
CseI	GACGC	1 cut(s)	215
CsiI	ACCWGGT	1 cut(s)	328
Csp6I	GTAC	2 cut(s)	504, 794
CviAII	CATG	5 cut(s)	224, 314, 433, 726, 731
CviJI	RGCY	8 cut(s)	25, 257, 406, 496, 532, 575, 646, 772
CviKI_1	RGCY	8 cut(s)	25, 257, 406, 496, 532, 575, 646, 772
CviQI	GTAC	2 cut(s)	504, 794
DdeI	CTNAG	3 cut(s)	5, 244, 619
DpnI	GATC	8 cut(s)	88, 145, 242, 336, 401, 606, 636, 761
DpnII	GATC	8 cut(s)	86, 143, 240, 334, 399, 604, 634, 759
DraIII	CACNNNGTG	2 cut(s)	332, 602
DriI	GACNNNNNGTC	1 cut(s)	121
Eam1105I	GACNNNNNGTC	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	726
Eco130I	CCWWGG	1 cut(s)	730
Eco47I	GGWCC	1 cut(s)	412
Eco57I	CTGAAG	2 cut(s)	293, 576
EcoO109I	RGGNCCY	1 cut(s)	770
EcoRII	CCWGG	3 cut(s)	217, 328, 496
EcoT14I	CCWWGG	1 cut(s)	730
EcoT22I	ATGCAT	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	5 cut(s)	227, 317, 436, 729, 734
FalI	AAGNNNNNCTT	2 cut(s)	438, 470
FaqI	GGGAC	2 cut(s)	119, 236
FatI	CATG	5 cut(s)	223, 313, 432, 725, 730
Fnu4HI	GCNGC	2 cut(s)	43, 267
FokI	GGATG	5 cut(s)	52, 78, 379, 668, 726
Fsp4HI	GCNGC	2 cut(s)	43, 267
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	2 cut(s)	43, 267
GsaI	CCCAGC	2 cut(s)	257, 342
HaeIII	GGCC	1 cut(s)	772
HapII	CCGG	2 cut(s)	15, 403
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	5 cut(s)	227, 317, 436, 729, 734
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HinfI	GANTC	4 cut(s)	9, 119, 277, 617
HpaII	CCGG	2 cut(s)	15, 403
HphI	GGTGA	2 cut(s)	344, 713
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	4 cut(s)	191, 205, 247, 622
Hpy188III	TCNNGA	6 cut(s)	84, 141, 367, 602, 638, 788
Hpy8I	GTNNAC	1 cut(s)	478
Hpy99I	CGWCG	2 cut(s)	61, 119
HpyAV	CCTTC	5 cut(s)	15, 112, 147, 291, 372
HpyCH4III	ACNGT	4 cut(s)	262, 508, 514, 806
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	5 cut(s)	350, 392, 666, 681, 776
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	3 cut(s)	5, 244, 619
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	5 cut(s)	227, 317, 436, 729, 734
HspAI	GCGC	1 cut(s)	45
KpnI	GGTACC	1 cut(s)	797
Kzo9I	GATC	8 cut(s)	86, 143, 240, 334, 399, 604, 634, 759
LmnI	GCTCC	1 cut(s)	220
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	2 cut(s)	401, 690
MabI	ACCWGGT	1 cut(s)	328
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	4 cut(s)	508, 594, 701, 825
MalI	GATC	8 cut(s)	88, 145, 242, 336, 401, 606, 636, 761
MboI	GATC	8 cut(s)	86, 143, 240, 334, 399, 604, 634, 759
MboII	GAAGA	4 cut(s)	30, 276, 286, 569
MflI	RGATCY	3 cut(s)	143, 634, 759
MluCI	AATT	1 cut(s)	166
MlyI	GAGTC	3 cut(s)	18, 128, 611
Mph1103I	ATGCAT	1 cut(s)	394
MroXI	GAANNNNTTC	1 cut(s)	25
MseI	TTAA	1 cut(s)	630
MspI	CCGG	2 cut(s)	15, 403
MspR9I	CCNGG	3 cut(s)	219, 330, 498
MvaI	CCWGG	3 cut(s)	219, 330, 498
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	730
NdeII	GATC	8 cut(s)	86, 143, 240, 334, 399, 604, 634, 759
NlaIII	CATG	5 cut(s)	227, 317, 436, 729, 734
NlaIV	GGNNCC	4 cut(s)	636, 761, 771, 795
NmuCI	GTSAC	2 cut(s)	594, 701
NsiI	ATGCAT	1 cut(s)	394
NspI	RCATGY	1 cut(s)	436
PdmI	GAANNNNTTC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	277
PflMI	CCANNNNNTGG	2 cut(s)	698, 731
PfoI	TCCNGGA	1 cut(s)	217
PkrI	GCNGC	2 cut(s)	44, 268
PleI	GAGTC	3 cut(s)	17, 127, 611
PpsI	GAGTC	3 cut(s)	17, 127, 611
Psp6I	CCWGG	3 cut(s)	217, 328, 496
PspFI	CCCAGC	2 cut(s)	253, 338
PspGI	CCWGG	3 cut(s)	217, 328, 496
PspN4I	GGNNCC	4 cut(s)	636, 761, 771, 795
PspPI	GGNCC	2 cut(s)	412, 770
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	3 cut(s)	143, 634, 759
RsaI	GTAC	2 cut(s)	505, 795
RsaNI	GTAC	2 cut(s)	504, 794
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	2 cut(s)	43, 267
Sau3AI	GATC	8 cut(s)	86, 143, 240, 334, 399, 604, 634, 759
Sau96I	GGNCC	2 cut(s)	412, 770
ScaI	AGTACT	1 cut(s)	505
SchI	GAGTC	3 cut(s)	18, 128, 611
ScrFI	CCNGG	3 cut(s)	219, 330, 498
SetI	ASST	9 cut(s)	56, 135, 259, 331, 376, 383, 477, 483, 795
SexAI	ACCWGGT	1 cut(s)	328
SfaNI	GCATC	2 cut(s)	401, 690
SfcI	CTRYAG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	412
SmlI	CTYRAG	3 cut(s)	416, 470, 788
SmoI	CTYRAG	3 cut(s)	416, 470, 788
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	3 cut(s)	42, 711, 763
StyD4I	CCNGG	3 cut(s)	217, 328, 496
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	4 cut(s)	262, 508, 514, 806
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	1 cut(s)	85
TaqII	GACCGA	1 cut(s)	830
TasI	AATT	1 cut(s)	166
TatI	WGTACW	1 cut(s)	503
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	1 cut(s)	276
TseFI	GTSAC	2 cut(s)	594, 701
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	2 cut(s)	594, 701
TspDTI	ATGAA	1 cut(s)	330
TspRI	CASTG	1 cut(s)	276
Van91I	CCANNNNNTGG	2 cut(s)	698, 731
VpaK11BI	GGWCC	1 cut(s)	412
XceI	RCATGY	1 cut(s)	436
XmnI	GAANNNNTTC	1 cut(s)	25
ZrmI	AGTACT	1 cut(s)	505
Zsp2I	ATGCAT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.