Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Reverse (-)

91415544 .. 91418260

Gene Structure 2717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG698900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTTGAGGGTTGCGGCGAGGAGGCTCTCTTCTCTGTCTGCTTCGCCGTGGAGGCCCAGCCAGCCCACCACCGCCTCCTCCGTCCTGTCTCGGAATCTCATCGACGGCCGTGACTCCTCCGATGACCTCAGATCCACCTATTTCAGGCCCGACTTCTATCTTCCTTCTAGAGGTTTCGCTTCCAATTCAGTGACCCCATCAGAGGACAACAGCATAGTATCAGATGTTCCTCCAACTGTTGCAGCTGTCAAAAATCCTTCTTCAAAGATAGTTTATGATGACTACAACCACGAGCGTTACCCTCCAGGCGACCCCAGCAAGCGGGCATTTGCCTACTTTGTCCTTACAGGCGGTAGGTTTGTCTATGCTTCTCTGATCCGTCTACTTATCCTCAAGTTTGTACTGAGCATGTCAGCCAGTAAGGATGTTCTAGCACTGGCCTCTGTTGAGGTTGATCTCTCTAGCATTGAGCCAGGCTCAACTGTGACTGTTAAGTGGCGTGGAAAGCCAGTGTTCATCAGGCGCCGAACTGATGATGATATCAAGCTGGCAAATAGTGTAGATGTTAATGCTCTTCGTGATCCCCAGCCAGATGCTGAGAGGGTTAAAGACCCAGAATGGCTTATTGTTGTTGGGGTCTGCACACATCTGGGTTGCATTCCCTTGCCAAATGCTGGTGATTTTGGGGGATGGTTTTGCCCCTGCCATGGTTCCCACTATGACATTTCCGGCAGGATCCGCAAGGGACCGGCACCATACAATTTGGAGGTACCCACATATTCCTTCTTGGAGGCGAACAAGTTAATGATTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

271

Amino Acids

29.87

Weight (kDa)

8.62

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_TM	PF02921	104 - 142	3.4e-08	Ubiquinol cytochrome reductase transmembrane region
Rieske	PF00355	158 - 256	1.4e-08	Rieske [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	769
AccB1I	GGYRCC	3 cut(s)	522, 751, 769
AccB7I	CCANNNNNTGG	1 cut(s)	674
AccI	GTMKAC	1 cut(s)	382
AciI	CCGC	5 cut(s)	14, 72, 322, 351, 739
AclWI	GGATC	5 cut(s)	126, 370, 575, 730, 743
AcoI	YGGCCR	1 cut(s)	106
AcyI	GRCGYC	1 cut(s)	523
AfaI	GTAC	2 cut(s)	402, 771
AfiI	CCNNNNNNNGG	6 cut(s)	144, 170, 202, 321, 674, 707
AgsI	TTSAA	1 cut(s)	264
AjnI	CCWGG	2 cut(s)	304, 472
AluBI	AGCT	2 cut(s)	245, 547
AluI	AGCT	2 cut(s)	245, 547
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	5 cut(s)	126, 370, 575, 730, 743
AlwNI	CAGNNNCTG	1 cut(s)	596
AoxI	GGCC	4 cut(s)	53, 106, 146, 438
ApeKI	GCWGC	1 cut(s)	242
Asp718I	GGTACC	1 cut(s)	769
AspLEI	GCGC	1 cut(s)	525
AspS9I	GGNCC	3 cut(s)	54, 147, 746
AsuHPI	GGTGA	1 cut(s)	689
AvaII	GGWCC	1 cut(s)	746
BamHI	GGATCC	1 cut(s)	735
BanI	GGYRCC	3 cut(s)	522, 751, 769
BauI	CACGAG	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	254
BccI	CCATC	2 cut(s)	205, 684
BceAI	ACGGC	3 cut(s)	31, 93, 121
BciT130I	CCWGG	2 cut(s)	306, 474
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	3 cut(s)	168, 431, 462
BfoI	RGCGCY	1 cut(s)	526
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	2 cut(s)	15, 243
BlsI	GCNGC	2 cut(s)	16, 244
Bme1390I	CCNGG	2 cut(s)	306, 474
Bme18I	GGWCC	1 cut(s)	746
BmgT120I	GGNCC	3 cut(s)	54, 147, 746
BmiI	GGNNCC	6 cut(s)	524, 712, 737, 747, 753, 771
BmrFI	CCNGG	2 cut(s)	306, 474
BmsI	GCATC	1 cut(s)	583
BplI	GAGNNNNNCTC	2 cut(s)	461, 493
BpmI	CTGGAG	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	377
BsaHI	GRCGYC	1 cut(s)	523
BsaJI	CCNNGG	2 cut(s)	47, 706
Bsc4I	CCNNNNNNNGG	6 cut(s)	144, 170, 202, 321, 674, 707
Bse118I	RCCGGY	1 cut(s)	748
Bse1I	ACTGG	3 cut(s)	417, 441, 509
BseBI	CCWGG	2 cut(s)	306, 474
BseDI	CCNNGG	2 cut(s)	47, 706
BseGI	GGATG	2 cut(s)	430, 695
BseLI	CCNNNNNNNGG	6 cut(s)	144, 170, 202, 321, 674, 707
BseMII	CTCAG	3 cut(s)	142, 395, 588
BseNI	ACTGG	3 cut(s)	417, 441, 509
BseRI	GAGGAG	3 cut(s)	34, 67, 106
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	254
BseYI	CCCAGC	3 cut(s)	56, 314, 585
BsgI	GTGCAG	1 cut(s)	625
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	4 cut(s)	55, 108, 148, 440
BshNI	GGYRCC	3 cut(s)	522, 751, 769
BsiEI	CGRYCG	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	729, 749
BslFI	GGGAC	1 cut(s)	759
BslI	CCNNNNNNNGG	6 cut(s)	144, 170, 202, 321, 674, 707
BsmAI	GTCTC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	759
BsmI	GAATGC	1 cut(s)	657
BsnI	GGCC	4 cut(s)	55, 108, 148, 440
Bsp143I	GATC	5 cut(s)	131, 375, 454, 580, 735
Bsp19I	CCATGG	1 cut(s)	706
BspACI	CCGC	5 cut(s)	14, 72, 322, 351, 739
BspANI	GGCC	4 cut(s)	55, 108, 148, 440
BspCNI	CTCAG	3 cut(s)	141, 396, 589
BspLI	GGNNCC	6 cut(s)	524, 712, 737, 747, 753, 771
BspPI	GGATC	5 cut(s)	126, 370, 575, 730, 743
BspQI	GCTCTTC	1 cut(s)	579
BspT107I	GGYRCC	3 cut(s)	522, 751, 769
BsrFI	RCCGGY	1 cut(s)	748
BsrI	ACTGG	3 cut(s)	417, 441, 509
BssAI	RCCGGY	1 cut(s)	748
BssECI	CCNNGG	2 cut(s)	47, 706
BssMI	GATC	5 cut(s)	131, 375, 454, 580, 735
BssNI	GRCGYC	1 cut(s)	523
BssSI	CACGAG	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	706
Bst2BI	CACGAG	1 cut(s)	290
Bst2UI	CCWGG	2 cut(s)	306, 474
Bst4CI	ACNGT	3 cut(s)	238, 484, 490
Bst6I	CTCTTC	2 cut(s)	34, 579
BstACI	GRCGYC	1 cut(s)	523
BstC8I	GCNNGC	4 cut(s)	62, 320, 324, 549
BstDEI	CTNAG	3 cut(s)	128, 404, 597
BstDSI	CCRYGG	2 cut(s)	47, 706
BstENI	CCTNNNNNAGG	2 cut(s)	142, 168
BstF5I	GGATG	2 cut(s)	430, 695
BstH2I	RGCGCY	1 cut(s)	526
BstHHI	GCGC	1 cut(s)	525
BstKTI	GATC	5 cut(s)	134, 378, 457, 583, 738
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	5 cut(s)	131, 375, 454, 580, 735
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	5 cut(s)	52, 61, 315, 505, 738
BstNI	CCWGG	2 cut(s)	306, 474
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	2 cut(s)	304, 472
BstV1I	GCAGC	1 cut(s)	254
BstX2I	RGATCY	2 cut(s)	131, 735
BstYI	RGATCY	2 cut(s)	131, 735
BstZI	CGGCCG	1 cut(s)	106
BsuRI	GGCC	4 cut(s)	55, 108, 148, 440
BtgI	CCRYGG	2 cut(s)	47, 706
BtsCI	GGATG	2 cut(s)	430, 695
BtsIMutI	CAGTG	3 cut(s)	195, 434, 516
Cac8I	GCNNGC	4 cut(s)	62, 320, 324, 549
CaiI	CAGNNNCTG	1 cut(s)	596
CfoI	GCGC	1 cut(s)	525
Cfr10I	RCCGGY	1 cut(s)	748
Cfr13I	GGNCC	3 cut(s)	54, 147, 746
Csp6I	GTAC	2 cut(s)	401, 770
CviAII	CATG	2 cut(s)	409, 707
CviQI	GTAC	2 cut(s)	401, 770
DdeI	CTNAG	3 cut(s)	128, 404, 597
DinI	GGCGCC	1 cut(s)	524
DpnI	GATC	5 cut(s)	133, 377, 456, 582, 737
DpnII	GATC	5 cut(s)	131, 375, 454, 580, 735
EaeI	YGGCCR	1 cut(s)	106
EagI	CGGCCG	1 cut(s)	106
Eam1104I	CTCTTC	2 cut(s)	34, 579
EarI	CTCTTC	2 cut(s)	34, 579
EclXI	CGGCCG	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	706
Eco32I	GATATC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	746
Eco52I	CGGCCG	1 cut(s)	106
EcoNI	CCTNNNNNAGG	2 cut(s)	142, 168
EcoRII	CCWGG	2 cut(s)	304, 472
EcoRV	GATATC	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	706
EgeI	GGCGCC	1 cut(s)	524
EheI	GGCGCC	1 cut(s)	524
ErhI	CCWWGG	1 cut(s)	706
FaeI	CATG	2 cut(s)	412, 710
FaiI	YATR	8 cut(s)	215, 276, 366, 410, 708, 720, 757, 778
FaqI	GGGAC	1 cut(s)	759
FatI	CATG	2 cut(s)	408, 706
FauI	CCCGC	1 cut(s)	315
FblI	GTMKAC	1 cut(s)	382
Fnu4HI	GCNGC	2 cut(s)	15, 243
FokI	GGATG	2 cut(s)	437, 702
Fsp4HI	GCNGC	2 cut(s)	15, 243
FspBI	CTAG	3 cut(s)	168, 431, 462
GlaI	GCGC	1 cut(s)	524
GluI	GCNGC	2 cut(s)	15, 243
GsaI	CCCAGC	3 cut(s)	60, 318, 589
GsuI	CTGGAG	1 cut(s)	288
HaeII	RGCGCY	1 cut(s)	526
HaeIII	GGCC	4 cut(s)	55, 108, 148, 440
HapII	CCGG	2 cut(s)	729, 749
HhaI	GCGC	1 cut(s)	525
Hin1I	GRCGYC	1 cut(s)	523
Hin1II	CATG	2 cut(s)	412, 710
Hin6I	GCGC	1 cut(s)	523
HinP1I	GCGC	1 cut(s)	523
HinfI	GANTC	2 cut(s)	94, 113
HpaII	CCGG	2 cut(s)	729, 749
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	6 cut(s)	93, 121, 131, 202, 223, 375
Hpy188III	TCNNGA	2 cut(s)	168, 578
Hpy8I	GTNNAC	1 cut(s)	383
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	3 cut(s)	174, 267, 793
HpyCH4III	ACNGT	3 cut(s)	238, 484, 490
HpyCH4V	TGCA	3 cut(s)	242, 642, 657
HpyF10VI	GCNNNNNNNGC	5 cut(s)	52, 61, 315, 505, 738
HpyF3I	CTNAG	3 cut(s)	128, 404, 597
Hsp92I	GRCGYC	1 cut(s)	523
Hsp92II	CATG	2 cut(s)	412, 710
HspAI	GCGC	1 cut(s)	523
KasI	GGCGCC	1 cut(s)	522
KpnI	GGTACC	1 cut(s)	773
Kzo9I	GATC	5 cut(s)	131, 375, 454, 580, 735
LguI	GCTCTTC	1 cut(s)	579
Lsp1109I	GCAGC	1 cut(s)	254
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	3 cut(s)	168, 431, 462
MaeIII	GTNAC	4 cut(s)	110, 190, 296, 484
MalI	GATC	5 cut(s)	133, 377, 456, 582, 737
MboI	GATC	5 cut(s)	131, 375, 454, 580, 735
MboII	GAAGA	4 cut(s)	21, 152, 252, 566
MflI	RGATCY	2 cut(s)	131, 735
MluCI	AATT	2 cut(s)	184, 760
Mly113I	GGCGCC	1 cut(s)	523
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	257
MseI	TTAA	4 cut(s)	492, 567, 606, 803
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	2 cut(s)	729, 749
MspR9I	CCNGG	2 cut(s)	306, 474
Mva1269I	GAATGC	1 cut(s)	657
MvaI	CCWGG	2 cut(s)	306, 474
MwoI	GCNNNNNNNGC	5 cut(s)	52, 61, 315, 505, 738
NarI	GGCGCC	1 cut(s)	523
NcoI	CCATGG	1 cut(s)	706
NdeII	GATC	5 cut(s)	131, 375, 454, 580, 735
NlaIII	CATG	2 cut(s)	412, 710
NlaIV	GGNNCC	6 cut(s)	524, 712, 737, 747, 753, 771
NmuCI	GTSAC	3 cut(s)	110, 190, 484
NspI	RCATGY	1 cut(s)	412
PciSI	GCTCTTC	1 cut(s)	579
PctI	GAATGC	1 cut(s)	657
PfeI	GAWTC	1 cut(s)	94
PflMI	CCANNNNNTGG	1 cut(s)	674
PkrI	GCNGC	2 cut(s)	16, 244
PleI	GAGTC	1 cut(s)	107
PluTI	GGCGCC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	107
Psp6I	CCWGG	2 cut(s)	304, 472
PspFI	CCCAGC	3 cut(s)	56, 314, 585
PspGI	CCWGG	2 cut(s)	304, 472
PspN4I	GGNNCC	6 cut(s)	524, 712, 737, 747, 753, 771
PspPI	GGNCC	3 cut(s)	54, 147, 746
PsrI	GAACNNNNNNTAC	2 cut(s)	210, 242
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	2 cut(s)	131, 735
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	2 cut(s)	402, 771
RsaNI	GTAC	2 cut(s)	401, 770
SapI	GCTCTTC	1 cut(s)	579
SaqAI	TTAA	4 cut(s)	492, 567, 606, 803
SatI	GCNGC	2 cut(s)	15, 243
Sau3AI	GATC	5 cut(s)	131, 375, 454, 580, 735
Sau96I	GGNCC	3 cut(s)	54, 147, 746
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	306, 474
SetI	ASST	8 cut(s)	129, 140, 175, 247, 359, 453, 549, 771
SfaNI	GCATC	1 cut(s)	583
SfoI	GGCGCC	1 cut(s)	524
SinI	GGWCC	1 cut(s)	746
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	2 cut(s)	184, 760
SsiI	CCGC	5 cut(s)	14, 72, 322, 351, 739
SspDI	GGCGCC	1 cut(s)	522
SspMI	CTAG	3 cut(s)	168, 431, 462
StyD4I	CCNGG	2 cut(s)	304, 472
StyI	CCWWGG	1 cut(s)	706
TaaI	ACNGT	3 cut(s)	238, 484, 490
TaqI	TCGA	1 cut(s)	102
TasI	AATT	2 cut(s)	184, 760
TatI	WGTACW	1 cut(s)	400
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	4 cut(s)	492, 567, 606, 803
Tru9I	TTAA	4 cut(s)	492, 567, 606, 803
TscAI	CASTG	3 cut(s)	195, 441, 516
TseFI	GTSAC	3 cut(s)	110, 190, 484
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	3 cut(s)	110, 190, 484
TspDTI	ATGAA	1 cut(s)	505
TspGWI	ACGGA	2 cut(s)	70, 368
TspRI	CASTG	3 cut(s)	195, 441, 516
Van91I	CCANNNNNTGG	1 cut(s)	674
VpaK11BI	GGWCC	1 cut(s)	746
XagI	CCTNNNNNAGG	2 cut(s)	142, 168
XbaI	TCTAGA	1 cut(s)	167
XceI	RCATGY	1 cut(s)	412
XmiI	GTMKAC	1 cut(s)	382
XspI	CTAG	3 cut(s)	168, 431, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.