Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001417.1

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Reverse (-)

12845 .. 13768

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001417.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgactgttgaattgattcagagtttcgcttccaattcagtgaccccatcagaggacaacagcatagtatcagatgttcctccaactgttgcagctgtcaaaaatccttcttcaaagatagtttatgatgactacaaccacgagcgttaccctccaggcgaccccagcaagcgggcatttgcctactttgtccttacaggcggtaggtttgtctatgcttctctgatccgtctacttatcctcaagtttgtactgagcatgtcagccagtaaggatgtcctagcactggcctctgttgaggttgatctctctagcattgagccaggctcaactgtgactgttaagtggcgtggaaagccagtgttcatcaggcgccgaactgatgatgatatcaagcttgcaaatagtgtagatgttaatgctcttcgtgatccccagccagatgctgagagggttaaagacccagaatggcttattgttgttggggtctgcacacatctgggttgcattcccttgccaaatgctggtgattttgggggatggttttgcccctgccatggttcccactatgacatttccggcaggatccgcaagggaccggcaccatacaatttggaggtacccacatattccttcttggaggcgaacaagttaatgattggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

221

Amino Acids

24.27

Weight (kDa)

6.08

Isoelectric Point (pI)

42.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	619
AccB1I	GGYRCC	3 cut(s)	372, 601, 619
AccB7I	CCANNNNNTGG	1 cut(s)	524
AccI	GTMKAC	1 cut(s)	232
AciI	CCGC	3 cut(s)	172, 201, 589
AclWI	GGATC	4 cut(s)	220, 425, 580, 593
AcyI	GRCGYC	1 cut(s)	373
AfaI	GTAC	2 cut(s)	252, 621
AfiI	CCNNNNNNNGG	5 cut(s)	52, 171, 286, 524, 557
AgsI	TTSAA	2 cut(s)	11, 114
AjnI	CCWGG	2 cut(s)	154, 322
AluBI	AGCT	2 cut(s)	95, 397
AluI	AGCT	2 cut(s)	95, 397
AlwI	GGATC	4 cut(s)	220, 425, 580, 593
AlwNI	CAGNNNCTG	1 cut(s)	446
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	1 cut(s)	92
Asp700I	GAANNNNTTC	1 cut(s)	15
Asp718I	GGTACC	1 cut(s)	619
AspLEI	GCGC	1 cut(s)	375
AspS9I	GGNCC	1 cut(s)	596
AsuHPI	GGTGA	1 cut(s)	539
AvaII	GGWCC	1 cut(s)	596
BamHI	GGATCC	1 cut(s)	585
BanI	GGYRCC	3 cut(s)	372, 601, 619
BauI	CACGAG	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	2 cut(s)	55, 534
BciT130I	CCWGG	2 cut(s)	156, 324
BfaI	CTAG	2 cut(s)	281, 312
BfoI	RGCGCY	1 cut(s)	376
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme1390I	CCNGG	2 cut(s)	156, 324
Bme18I	GGWCC	1 cut(s)	596
BmgT120I	GGNCC	1 cut(s)	596
BmiI	GGNNCC	6 cut(s)	374, 562, 587, 597, 603, 621
BmrFI	CCNGG	2 cut(s)	156, 324
BmsI	GCATC	1 cut(s)	433
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BpmI	CTGGAG	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	373
BsaJI	CCNNGG	1 cut(s)	556
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 171, 286, 524, 557
Bse118I	RCCGGY	1 cut(s)	598
Bse1I	ACTGG	3 cut(s)	267, 291, 359
BseBI	CCWGG	2 cut(s)	156, 324
BseDI	CCNNGG	1 cut(s)	556
BseGI	GGATG	2 cut(s)	280, 545
BseLI	CCNNNNNNNGG	5 cut(s)	52, 171, 286, 524, 557
BseMII	CTCAG	2 cut(s)	245, 438
BseNI	ACTGG	3 cut(s)	267, 291, 359
BseXI	GCAGC	1 cut(s)	104
BseYI	CCCAGC	2 cut(s)	164, 435
BsgI	GTGCAG	1 cut(s)	475
BshFI	GGCC	1 cut(s)	290
BshNI	GGYRCC	3 cut(s)	372, 601, 619
BsiSI	CCGG	2 cut(s)	579, 599
BslFI	GGGAC	1 cut(s)	609
BslI	CCNNNNNNNGG	5 cut(s)	52, 171, 286, 524, 557
BsmFI	GGGAC	1 cut(s)	609
BsmI	GAATGC	1 cut(s)	507
BsnI	GGCC	1 cut(s)	290
Bsp143I	GATC	4 cut(s)	225, 304, 430, 585
Bsp19I	CCATGG	1 cut(s)	556
BspACI	CCGC	3 cut(s)	172, 201, 589
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	2 cut(s)	246, 439
BspLI	GGNNCC	6 cut(s)	374, 562, 587, 597, 603, 621
BspPI	GGATC	4 cut(s)	220, 425, 580, 593
BspQI	GCTCTTC	1 cut(s)	429
BspT107I	GGYRCC	3 cut(s)	372, 601, 619
BsrFI	RCCGGY	1 cut(s)	598
BsrI	ACTGG	3 cut(s)	267, 291, 359
BssAI	RCCGGY	1 cut(s)	598
BssECI	CCNNGG	1 cut(s)	556
BssMI	GATC	4 cut(s)	225, 304, 430, 585
BssNI	GRCGYC	1 cut(s)	373
BssSI	CACGAG	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	556
Bst2BI	CACGAG	1 cut(s)	140
Bst2UI	CCWGG	2 cut(s)	156, 324
Bst4CI	ACNGT	4 cut(s)	7, 88, 334, 340
Bst6I	CTCTTC	1 cut(s)	429
BstACI	GRCGYC	1 cut(s)	373
BstC8I	GCNNGC	3 cut(s)	170, 174, 399
BstDEI	CTNAG	2 cut(s)	254, 447
BstDSI	CCRYGG	1 cut(s)	556
BstF5I	GGATG	2 cut(s)	280, 545
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	1 cut(s)	375
BstKTI	GATC	4 cut(s)	228, 307, 433, 588
BstMBI	GATC	4 cut(s)	225, 304, 430, 585
BstMWI	GCNNNNNNNGC	3 cut(s)	165, 355, 588
BstNI	CCWGG	2 cut(s)	156, 324
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	154, 322
BstV1I	GCAGC	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	585
BstYI	RGATCY	1 cut(s)	585
BsuRI	GGCC	1 cut(s)	290
BtgI	CCRYGG	1 cut(s)	556
BtsCI	GGATG	2 cut(s)	280, 545
BtsIMutI	CAGTG	3 cut(s)	45, 284, 366
Cac8I	GCNNGC	3 cut(s)	170, 174, 399
CaiI	CAGNNNCTG	1 cut(s)	446
CfoI	GCGC	1 cut(s)	375
Cfr10I	RCCGGY	1 cut(s)	598
Cfr13I	GGNCC	1 cut(s)	596
Csp6I	GTAC	2 cut(s)	251, 620
CviAII	CATG	2 cut(s)	259, 557
CviJI	RGCY	9 cut(s)	95, 266, 290, 322, 327, 358, 397, 439, 472
CviKI_1	RGCY	9 cut(s)	95, 266, 290, 322, 327, 358, 397, 439, 472
CviQI	GTAC	2 cut(s)	251, 620
DdeI	CTNAG	2 cut(s)	254, 447
DinI	GGCGCC	1 cut(s)	374
DpnI	GATC	4 cut(s)	227, 306, 432, 587
DpnII	GATC	4 cut(s)	225, 304, 430, 585
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	556
Eco32I	GATATC	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	596
EcoRII	CCWGG	2 cut(s)	154, 322
EcoRV	GATATC	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	556
EgeI	GGCGCC	1 cut(s)	374
EheI	GGCGCC	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	2 cut(s)	262, 560
FaiI	YATR	8 cut(s)	65, 126, 216, 260, 558, 570, 607, 628
FaqI	GGGAC	1 cut(s)	609
FatI	CATG	2 cut(s)	258, 556
FauI	CCCGC	1 cut(s)	165
FblI	GTMKAC	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	2 cut(s)	287, 552
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	2 cut(s)	281, 312
GlaI	GCGC	1 cut(s)	374
GluI	GCNGC	1 cut(s)	93
GsaI	CCCAGC	2 cut(s)	168, 439
GsuI	CTGGAG	1 cut(s)	138
HaeII	RGCGCY	1 cut(s)	376
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	2 cut(s)	579, 599
HhaI	GCGC	1 cut(s)	375
Hin1I	GRCGYC	1 cut(s)	373
Hin1II	CATG	2 cut(s)	262, 560
Hin6I	GCGC	1 cut(s)	373
HinP1I	GCGC	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	2 cut(s)	579, 599
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	4 cut(s)	21, 52, 73, 225
Hpy188III	TCNNGA	1 cut(s)	428
Hpy8I	GTNNAC	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	117, 643
HpyCH4III	ACNGT	4 cut(s)	7, 88, 334, 340
HpyCH4V	TGCA	4 cut(s)	92, 401, 492, 507
HpyF10VI	GCNNNNNNNGC	3 cut(s)	165, 355, 588
HpyF3I	CTNAG	2 cut(s)	254, 447
Hsp92I	GRCGYC	1 cut(s)	373
Hsp92II	CATG	2 cut(s)	262, 560
HspAI	GCGC	1 cut(s)	373
KasI	GGCGCC	1 cut(s)	372
KpnI	GGTACC	1 cut(s)	623
Kzo9I	GATC	4 cut(s)	225, 304, 430, 585
LguI	GCTCTTC	1 cut(s)	429
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	2 cut(s)	281, 312
MaeIII	GTNAC	3 cut(s)	40, 146, 334
MalI	GATC	4 cut(s)	227, 306, 432, 587
MboI	GATC	4 cut(s)	225, 304, 430, 585
MboII	GAAGA	2 cut(s)	102, 416
MflI	RGATCY	1 cut(s)	585
MluCI	AATT	3 cut(s)	11, 34, 610
Mly113I	GGCGCC	1 cut(s)	373
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	9 cut(s)	46, 90, 162, 251, 292, 301, 444, 610, 634
MroXI	GAANNNNTTC	1 cut(s)	15
MseI	TTAA	4 cut(s)	342, 417, 456, 653
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	2 cut(s)	579, 599
MspR9I	CCNGG	2 cut(s)	156, 324
Mva1269I	GAATGC	1 cut(s)	507
MvaI	CCWGG	2 cut(s)	156, 324
MwoI	GCNNNNNNNGC	3 cut(s)	165, 355, 588
NarI	GGCGCC	1 cut(s)	373
NcoI	CCATGG	1 cut(s)	556
NdeII	GATC	4 cut(s)	225, 304, 430, 585
NlaIII	CATG	2 cut(s)	262, 560
NlaIV	GGNNCC	6 cut(s)	374, 562, 587, 597, 603, 621
NmuCI	GTSAC	2 cut(s)	40, 334
NspI	RCATGY	1 cut(s)	262
PciSI	GCTCTTC	1 cut(s)	429
PctI	GAATGC	1 cut(s)	507
PdmI	GAANNNNTTC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	16
PflMI	CCANNNNNTGG	1 cut(s)	524
PkrI	GCNGC	1 cut(s)	94
PluTI	GGCGCC	1 cut(s)	376
Psp6I	CCWGG	2 cut(s)	154, 322
PspFI	CCCAGC	2 cut(s)	164, 435
PspGI	CCWGG	2 cut(s)	154, 322
PspN4I	GGNNCC	6 cut(s)	374, 562, 587, 597, 603, 621
PspPI	GGNCC	1 cut(s)	596
PsrI	GAACNNNNNNTAC	2 cut(s)	60, 92
PstNI	CAGNNNCTG	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	585
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	2 cut(s)	252, 621
RsaNI	GTAC	2 cut(s)	251, 620
SapI	GCTCTTC	1 cut(s)	429
SaqAI	TTAA	4 cut(s)	342, 417, 456, 653
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	4 cut(s)	225, 304, 430, 585
Sau96I	GGNCC	1 cut(s)	596
ScrFI	CCNGG	2 cut(s)	156, 324
SetI	ASST	5 cut(s)	97, 209, 303, 399, 621
SfaNI	GCATC	1 cut(s)	433
SfoI	GGCGCC	1 cut(s)	374
SinI	GGWCC	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	3 cut(s)	11, 34, 610
SsiI	CCGC	3 cut(s)	172, 201, 589
SspDI	GGCGCC	1 cut(s)	372
SspMI	CTAG	2 cut(s)	281, 312
StyD4I	CCNGG	2 cut(s)	154, 322
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	4 cut(s)	7, 88, 334, 340
TasI	AATT	3 cut(s)	11, 34, 610
TatI	WGTACW	1 cut(s)	250
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	4 cut(s)	342, 417, 456, 653
Tru9I	TTAA	4 cut(s)	342, 417, 456, 653
TscAI	CASTG	3 cut(s)	45, 291, 366
TseFI	GTSAC	2 cut(s)	40, 334
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	2 cut(s)	40, 334
TspDTI	ATGAA	1 cut(s)	355
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	3 cut(s)	45, 291, 366
Van91I	CCANNNNNTGG	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	596
XceI	RCATGY	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	15
XspI	CTAG	2 cut(s)	281, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.