Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Reverse (-)

51055022 .. 51056613

Gene Structure 1592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG289300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCTGAGAGTCGCCGGAAGAAGGCTTTCCTCCTCTGTTGGCGGCGCGTGGAGGTCGTCGCAGACATCTCCAGCCTTCCTCTCTCGATCCCATCCACTTTCCTTCAACAACAACGACGAGTCGTCCTCCGATGTCCCTTCCAGATCCCCCATCCAATCTCCATTTCTCATCAGAGGATTTTCCTCTGATGCCCTCGCTCCTGGACATGATTTTGGTGGTATGATCTCAGACGTCCCAGCTACTGTGGCAGCAGTGAAGAATCCTTCTTCAAAGATTGTATATGATGACTACAACCATGAAAGATACCCACCTGGTGATCCCAGCAAGCGTGCATTTGCTTATTTTGTCTTGACAGGTGGAAGGTTTGTGTATGCATCCTTGATCCGGCTTCTGGTCCTCAAGTTTGTTTTGAGCATGTCTGCCAGCAAAGATGTCCTTGCTCTTGCTTCCCTTGAGGTTGACCTATCCAGCATTGAGCCTGGCAGTACTGTTACTGTCAAGTGGAGGGGGAAGCCAGTTTTTATTAGGCGTAGAACTGAAGATGACATCAAGTTGGCTAATAGTATTGATGTTCAGTCACTTCGTGATCCTCAACAGGACTCAGAGAGGGTTAAGGATCCAGAATGGCTTATTGTTGTTGGTGTCTGCACTCACTTGGGGTGCATCCCCTTGCCAAATGCTGGTGACTTTGGCGGATGGTTTTGCCCATGCCATGGTTCACACTATGACATTTCTGGTAGGATCCGCAAGGGGCCTGCACCTTACAATCTTGAGGTACCCACTTACAGTTTTTTGACCGAGAACAAGTTACTCATTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0006091 GO:0006950 GO:0008121 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016679 GO:0016681 GO:0019866 GO:0022900 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046872 GO:0050896 GO:0055114 GO:0070069 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

273

Amino Acids

29.89

Weight (kDa)

8.64

Isoelectric Point (pI)

63.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_TM	PF02921	106 - 144	1.2e-08	Ubiquinol cytochrome reductase transmembrane region
Rieske	PF00355	199 - 258	1.7e-08	Rieske [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	234
Acc65I	GGTACC	1 cut(s)	775
AccB1I	GGYRCC	1 cut(s)	775
AccB7I	CCANNNNNTGG	2 cut(s)	680, 713
AccII	CGCG	1 cut(s)	47
AciI	CCGC	3 cut(s)	42, 693, 745
AclWI	GGATC	9 cut(s)	81, 138, 311, 376, 581, 611, 624, 736, 749
AcuI	CTGAAG	1 cut(s)	558
AcyI	GRCGYC	1 cut(s)	231
AdeI	CACNNNGTG	2 cut(s)	314, 584
AfaI	GTAC	2 cut(s)	487, 777
AfiI	CCNNNNNNNGG	5 cut(s)	21, 384, 391, 680, 713
AgsI	TTSAA	2 cut(s)	106, 270
AhdI	GACNNNNNGTC	1 cut(s)	121
AjnI	CCWGG	3 cut(s)	199, 310, 478
AjuI	GAANNNNNNNTTGG	2 cut(s)	147, 179
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
AlwI	GGATC	9 cut(s)	81, 138, 311, 376, 581, 611, 624, 736, 749
AlwNI	CAGNNNCTG	1 cut(s)	242
AoxI	GGCC	1 cut(s)	752
ApeKI	GCWGC	1 cut(s)	248
Asp700I	GAANNNNTTC	1 cut(s)	25
Asp718I	GGTACC	1 cut(s)	775
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	394, 752
AsuHPI	GGTGA	2 cut(s)	326, 695
AvaII	GGWCC	1 cut(s)	394
BamHI	GGATCC	2 cut(s)	616, 741
BanI	GGYRCC	1 cut(s)	775
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	3 cut(s)	99, 158, 690
BciT130I	CCWGG	3 cut(s)	201, 312, 480
BisI	GCNGC	2 cut(s)	43, 249
BlsI	GCNGC	2 cut(s)	44, 250
BmcAI	AGTACT	1 cut(s)	487
Bme1390I	CCNGG	3 cut(s)	201, 312, 480
Bme18I	GGWCC	1 cut(s)	394
BmeRI	GACNNNNNGTC	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	394, 752
BmiI	GGNNCC	4 cut(s)	618, 743, 753, 777
BmrFI	CCNGG	3 cut(s)	201, 312, 480
BmsI	GCATC	3 cut(s)	178, 383, 672
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
BpmI	CTGGAG	1 cut(s)	54
BpuEI	CTTGAG	3 cut(s)	383, 473, 791
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	712
Bsc4I	CCNNNNNNNGG	5 cut(s)	21, 384, 391, 680, 713
Bse1I	ACTGG	1 cut(s)	515
BseBI	CCWGG	3 cut(s)	201, 312, 480
BseDI	CCNNGG	1 cut(s)	712
BseGI	GGATG	5 cut(s)	91, 150, 374, 663, 701
BseLI	CCNNNNNNNGG	5 cut(s)	21, 384, 391, 680, 713
BseMII	CTCAG	2 cut(s)	240, 615
BseNI	ACTGG	1 cut(s)	515
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	260
BseYI	CCCAGC	2 cut(s)	235, 320
BsgI	GTGCAG	2 cut(s)	631, 741
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	754
BshNI	GGYRCC	1 cut(s)	775
BsiSI	CCGG	2 cut(s)	15, 385
BslFI	GGGAC	2 cut(s)	119, 218
BslI	CCNNNNNNNGG	5 cut(s)	21, 384, 391, 680, 713
BsmFI	GGGAC	2 cut(s)	119, 218
BsnI	GGCC	1 cut(s)	754
Bsp143I	GATC	8 cut(s)	86, 143, 222, 316, 381, 586, 616, 741
Bsp19I	CCATGG	1 cut(s)	712
BspACI	CCGC	3 cut(s)	42, 693, 745
BspANI	GGCC	1 cut(s)	754
BspCNI	CTCAG	2 cut(s)	239, 614
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	4 cut(s)	618, 743, 753, 777
BspPI	GGATC	9 cut(s)	81, 138, 311, 376, 581, 611, 624, 736, 749
BspT107I	GGYRCC	1 cut(s)	775
BsrI	ACTGG	1 cut(s)	515
BssECI	CCNNGG	1 cut(s)	712
BssMI	GATC	8 cut(s)	86, 143, 222, 316, 381, 586, 616, 741
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	712
Bst2UI	CCWGG	3 cut(s)	201, 312, 480
Bst4CI	ACNGT	4 cut(s)	244, 490, 496, 788
BstACI	GRCGYC	1 cut(s)	231
BstC8I	GCNNGC	4 cut(s)	326, 330, 424, 756
BstDEI	CTNAG	3 cut(s)	5, 226, 601
BstDSI	CCRYGG	1 cut(s)	712
BstF5I	GGATG	5 cut(s)	91, 150, 374, 663, 701
BstFNI	CGCG	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	8 cut(s)	89, 146, 225, 319, 384, 589, 619, 744
BstMBI	GATC	8 cut(s)	86, 143, 222, 316, 381, 586, 616, 741
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	3 cut(s)	201, 312, 480
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	3 cut(s)	199, 310, 478
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	260
BstX2I	RGATCY	3 cut(s)	143, 616, 741
BstYI	RGATCY	3 cut(s)	143, 616, 741
BsuRI	GGCC	1 cut(s)	754
BtgI	CCRYGG	1 cut(s)	712
BtsCI	GGATG	5 cut(s)	91, 150, 374, 663, 701
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	4 cut(s)	326, 330, 424, 756
CaiI	CAGNNNCTG	1 cut(s)	242
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	394, 752
CsiI	ACCWGGT	1 cut(s)	310
Csp6I	GTAC	2 cut(s)	486, 776
CviAII	CATG	5 cut(s)	206, 296, 415, 708, 713
CviJI	RGCY	9 cut(s)	25, 74, 239, 388, 478, 514, 557, 628, 754
CviKI_1	RGCY	9 cut(s)	25, 74, 239, 388, 478, 514, 557, 628, 754
CviQI	GTAC	2 cut(s)	486, 776
DdeI	CTNAG	3 cut(s)	5, 226, 601
DpnI	GATC	8 cut(s)	88, 145, 224, 318, 383, 588, 618, 743
DpnII	GATC	8 cut(s)	86, 143, 222, 316, 381, 586, 616, 741
DraIII	CACNNNGTG	2 cut(s)	314, 584
DriI	GACNNNNNGTC	1 cut(s)	121
Eam1105I	GACNNNNNGTC	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	708
Eco130I	CCWWGG	1 cut(s)	712
Eco47I	GGWCC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	558
EcoO109I	RGGNCCY	1 cut(s)	752
EcoRII	CCWGG	3 cut(s)	199, 310, 478
EcoT14I	CCWWGG	1 cut(s)	712
EcoT22I	ATGCAT	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	712
FaeI	CATG	5 cut(s)	209, 299, 418, 711, 716
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FaqI	GGGAC	2 cut(s)	119, 218
FatI	CATG	5 cut(s)	205, 295, 414, 707, 712
Fnu4HI	GCNGC	2 cut(s)	43, 249
FokI	GGATG	5 cut(s)	78, 137, 361, 650, 708
Fsp4HI	GCNGC	2 cut(s)	43, 249
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	2 cut(s)	43, 249
GsaI	CCCAGC	2 cut(s)	239, 324
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	754
HapII	CCGG	2 cut(s)	15, 385
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	5 cut(s)	209, 299, 418, 711, 716
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	4 cut(s)	9, 119, 259, 599
HpaII	CCGG	2 cut(s)	15, 385
HphI	GGTGA	2 cut(s)	326, 695
Hpy166II	GTNNAC	2 cut(s)	460, 719
Hpy188I	TCNGA	5 cut(s)	130, 173, 187, 229, 604
Hpy188III	TCNNGA	6 cut(s)	84, 141, 349, 584, 620, 770
Hpy8I	GTNNAC	2 cut(s)	460, 719
Hpy99I	CGWCG	2 cut(s)	61, 119
HpyAV	CCTTC	6 cut(s)	15, 85, 112, 147, 273, 354
HpyCH4III	ACNGT	4 cut(s)	244, 490, 496, 788
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	5 cut(s)	332, 374, 648, 663, 758
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	3 cut(s)	5, 226, 601
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	5 cut(s)	209, 299, 418, 711, 716
HspAI	GCGC	1 cut(s)	45
KpnI	GGTACC	1 cut(s)	779
Kzo9I	GATC	8 cut(s)	86, 143, 222, 316, 381, 586, 616, 741
LmnI	GCTCC	1 cut(s)	202
Lsp1109I	GCAGC	1 cut(s)	260
LweI	GCATC	3 cut(s)	178, 383, 672
MabI	ACCWGGT	1 cut(s)	310
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	4 cut(s)	490, 576, 683, 807
MalI	GATC	8 cut(s)	88, 145, 224, 318, 383, 588, 618, 743
MboI	GATC	8 cut(s)	86, 143, 222, 316, 381, 586, 616, 741
MboII	GAAGA	4 cut(s)	30, 258, 268, 551
MflI	RGATCY	3 cut(s)	143, 616, 741
MlyI	GAGTC	3 cut(s)	18, 128, 593
Mph1103I	ATGCAT	1 cut(s)	376
MroXI	GAANNNNTTC	1 cut(s)	25
MseI	TTAA	1 cut(s)	612
MspI	CCGG	2 cut(s)	15, 385
MspR9I	CCNGG	3 cut(s)	201, 312, 480
MvaI	CCWGG	3 cut(s)	201, 312, 480
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	245
NcoI	CCATGG	1 cut(s)	712
NdeII	GATC	8 cut(s)	86, 143, 222, 316, 381, 586, 616, 741
NlaIII	CATG	5 cut(s)	209, 299, 418, 711, 716
NlaIV	GGNNCC	4 cut(s)	618, 743, 753, 777
NmuCI	GTSAC	2 cut(s)	576, 683
NsiI	ATGCAT	1 cut(s)	376
NspI	RCATGY	1 cut(s)	418
PdmI	GAANNNNTTC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	259
PflMI	CCANNNNNTGG	2 cut(s)	680, 713
PfoI	TCCNGGA	1 cut(s)	199
PkrI	GCNGC	2 cut(s)	44, 250
PleI	GAGTC	3 cut(s)	17, 127, 593
PpsI	GAGTC	3 cut(s)	17, 127, 593
Psp6I	CCWGG	3 cut(s)	199, 310, 478
PspFI	CCCAGC	2 cut(s)	235, 320
PspGI	CCWGG	3 cut(s)	199, 310, 478
PspN4I	GGNNCC	4 cut(s)	618, 743, 753, 777
PspPI	GGNCC	2 cut(s)	394, 752
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	3 cut(s)	143, 616, 741
RsaI	GTAC	2 cut(s)	487, 777
RsaNI	GTAC	2 cut(s)	486, 776
SaqAI	TTAA	1 cut(s)	612
SatI	GCNGC	2 cut(s)	43, 249
Sau3AI	GATC	8 cut(s)	86, 143, 222, 316, 381, 586, 616, 741
Sau96I	GGNCC	2 cut(s)	394, 752
ScaI	AGTACT	1 cut(s)	487
SchI	GAGTC	3 cut(s)	18, 128, 593
ScrFI	CCNGG	3 cut(s)	201, 312, 480
SexAI	ACCWGGT	1 cut(s)	310
SfaNI	GCATC	3 cut(s)	178, 383, 672
SinI	GGWCC	1 cut(s)	394
SmlI	CTYRAG	3 cut(s)	398, 452, 770
SmoI	CTYRAG	3 cut(s)	398, 452, 770
SsiI	CCGC	3 cut(s)	42, 693, 745
StyD4I	CCNGG	3 cut(s)	199, 310, 478
StyI	CCWWGG	1 cut(s)	712
TaaI	ACNGT	4 cut(s)	244, 490, 496, 788
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	85
TaqII	GACCGA	1 cut(s)	812
TatI	WGTACW	1 cut(s)	485
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	2 cut(s)	576, 683
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	2 cut(s)	576, 683
TspDTI	ATGAA	1 cut(s)	312
TspRI	CASTG	1 cut(s)	258
Van91I	CCANNNNNTGG	2 cut(s)	680, 713
VpaK11BI	GGWCC	1 cut(s)	394
XceI	RCATGY	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	25
ZraI	GACGTC	1 cut(s)	232
ZrmI	AGTACT	1 cut(s)	487
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.