Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Reverse (-)

25359389 .. 25361361

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGCTGAGAGTCGCCGGAAAAAGGCTTTCATCCTCTGTGGGCGGCGCGTGGAGGTCGTCGCAGGCAGCCCCAGCTTTCCTCTCTCGATCTCATCATCCACTTTCCTTCAACAACGACAAGTCCTCCTCCTCCGATATCCCTTCCAGATCCCCCATTCACTCTCTCCTCAATTCCCAATCCCCATTTCTCATCAGAGGATTTTCCTCTGACGCCCTTGCTCCTGGTCATGATGTTGGTAGTATGATCTCAGACGTCCCGGCTACTGTGGCAGCAGTGAAGAATCCTTCTTCAAAGATTGTATATGATGAGTACAACCATGAGAGATACCCACCTGGTGATCCCAGCAAGCGTGCATTTGCTTATTTTGTCTTGACCGGTGGAAGGTTTGTGTATGCGTCCTTGATCCGACTTCTGGTCCTGAAATTTGTTCTGAGCATGTCTGCCAGCAAAGATGTCCTTGCTCTTGCTTCCCTTGAGGTTGACGTATCCAGCATTGAGCCTGGCACTACTGTTACTGTCAAGTGGAGGGGGAAGCCAGTTTTTATTAGGCGTAGAACTGAAGACGACATCAAGTTGGCTAATAGTATTGATGTTCAGTCTCTTCGTGATCCTCAACAGGACGCAGAGAGGGTTAAGGATCCAGAATGGCTGATTGTTGTTGGGGTCTGCACTCACTTAGGGTGCATCCCCTTGCCAAATGCTGGTGACTTTGGCGGATGGTTTTGTCCATGCCATGGTTCGCACTATGATATTTCTGGTAGGATCCGTAAGGGGCCTGCACCCTACAATCTTGAGGTACCTACTTACAGTTTTTTGACAGAGAACAAGTTGCTCATTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0006091 GO:0006950 GO:0008121 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016679 GO:0016681 GO:0019866 GO:0022900 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046872 GO:0050896 GO:0055114 GO:0070069 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

281

Amino Acids

30.57

Weight (kDa)

9.01

Isoelectric Point (pI)

57.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_TM	PF02921	113 - 151	1.2e-08	Ubiquinol cytochrome reductase transmembrane region
Rieske	PF00355	163 - 265	9.4e-09	Rieske [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
Acc65I	GGTACC	1 cut(s)	796
AccB1I	GGYRCC	1 cut(s)	796
AccB7I	CCANNNNNTGG	2 cut(s)	701, 734
AccII	CGCG	1 cut(s)	47
AciI	CCGC	2 cut(s)	42, 714
AclWI	GGATC	8 cut(s)	141, 332, 397, 602, 632, 645, 757, 770
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	1 cut(s)	579
AcyI	GRCGYC	2 cut(s)	210, 252
AdeI	CACNNNGTG	1 cut(s)	335
AfaI	GTAC	2 cut(s)	311, 798
AfiI	CCNNNNNNNGG	5 cut(s)	21, 381, 412, 701, 734
AgeI	ACCGGT	1 cut(s)	374
AgsI	TTSAA	2 cut(s)	109, 291
AhdI	GACNNNNNGTC	1 cut(s)	413
AjnI	CCWGG	3 cut(s)	220, 331, 499
AjuI	GAANNNNNNNTTGG	2 cut(s)	168, 200
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	603
AlwI	GGATC	8 cut(s)	141, 332, 397, 602, 632, 645, 757, 770
AoxI	GGCC	1 cut(s)	773
ApeKI	GCWGC	2 cut(s)	65, 269
ApoI	RAATTY	1 cut(s)	422
AsiGI	ACCGGT	1 cut(s)	374
Asp718I	GGTACC	1 cut(s)	796
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	415, 773
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	347, 716
AvaII	GGWCC	1 cut(s)	415
BamHI	GGATCC	2 cut(s)	637, 762
BanI	GGYRCC	1 cut(s)	796
BbsI	GAAGAC	1 cut(s)	567
BbvI	GCAGC	2 cut(s)	77, 281
BccI	CCATC	1 cut(s)	711
BciT130I	CCWGG	3 cut(s)	222, 333, 501
BciVI	GTATCC	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	603
BfuI	GTATCC	1 cut(s)	496
BisI	GCNGC	3 cut(s)	43, 66, 270
BlsI	GCNGC	3 cut(s)	44, 67, 271
Bme1390I	CCNGG	4 cut(s)	222, 257, 333, 501
Bme18I	GGWCC	1 cut(s)	415
BmeRI	GACNNNNNGTC	1 cut(s)	413
BmgT120I	GGNCC	2 cut(s)	415, 773
BmiI	GGNNCC	4 cut(s)	639, 764, 774, 798
BmrFI	CCNGG	4 cut(s)	222, 257, 333, 501
BmsI	GCATC	1 cut(s)	693
BpiI	GAAGAC	1 cut(s)	567
BpuEI	CTTGAG	2 cut(s)	494, 812
BpuMI	CCSGG	1 cut(s)	257
BsaHI	GRCGYC	2 cut(s)	210, 252
BsaJI	CCNNGG	1 cut(s)	733
BsaWI	WCCGGW	1 cut(s)	374
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	5 cut(s)	21, 381, 412, 701, 734
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	536
BseBI	CCWGG	3 cut(s)	222, 333, 501
BseDI	CCNNGG	1 cut(s)	733
BseGI	GGATG	4 cut(s)	29, 94, 684, 722
BseLI	CCNNNNNNNGG	5 cut(s)	21, 381, 412, 701, 734
BseMII	CTCAG	2 cut(s)	261, 422
BseNI	ACTGG	1 cut(s)	536
BseRI	GAGGAG	3 cut(s)	115, 118, 155
BseXI	GCAGC	2 cut(s)	77, 281
BseYI	CCCAGC	2 cut(s)	70, 341
BsgI	GTGCAG	2 cut(s)	652, 762
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	775
BshNI	GGYRCC	1 cut(s)	796
BshTI	ACCGGT	1 cut(s)	374
BsiSI	CCGG	3 cut(s)	15, 257, 375
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	5 cut(s)	21, 381, 412, 701, 734
BsmAI	GTCTC	1 cut(s)	603
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	775
Bsp143I	GATC	8 cut(s)	86, 146, 243, 337, 402, 607, 637, 762
Bsp19I	CCATGG	1 cut(s)	733
BspACI	CCGC	2 cut(s)	42, 714
BspANI	GGCC	1 cut(s)	775
BspCNI	CTCAG	2 cut(s)	260, 423
BspFNI	CGCG	1 cut(s)	47
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	4 cut(s)	639, 764, 774, 798
BspPI	GGATC	8 cut(s)	141, 332, 397, 602, 632, 645, 757, 770
BspT107I	GGYRCC	1 cut(s)	796
BsrFI	RCCGGY	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	536
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	733
BssMI	GATC	8 cut(s)	86, 146, 243, 337, 402, 607, 637, 762
BssNI	GRCGYC	2 cut(s)	210, 252
BssT1I	CCWWGG	1 cut(s)	733
Bst2UI	CCWGG	3 cut(s)	222, 333, 501
Bst4CI	ACNGT	4 cut(s)	265, 511, 517, 809
Bst6I	CTCTTC	1 cut(s)	606
BstACI	GRCGYC	2 cut(s)	210, 252
BstC8I	GCNNGC	5 cut(s)	63, 347, 351, 445, 777
BstDEI	CTNAG	4 cut(s)	5, 247, 431, 676
BstDSI	CCRYGG	1 cut(s)	733
BstF5I	GGATG	4 cut(s)	29, 94, 684, 722
BstFNI	CGCG	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	8 cut(s)	89, 149, 246, 340, 405, 610, 640, 765
BstMAI	GTCTC	1 cut(s)	603
BstMBI	GATC	8 cut(s)	86, 146, 243, 337, 402, 607, 637, 762
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 266
BstNI	CCWGG	3 cut(s)	222, 333, 501
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	4 cut(s)	220, 255, 331, 499
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	77, 281
BstV2I	GAAGAC	1 cut(s)	567
BstX2I	RGATCY	3 cut(s)	146, 637, 762
BstYI	RGATCY	3 cut(s)	146, 637, 762
BsuI	GTATCC	1 cut(s)	496
BsuRI	GGCC	1 cut(s)	775
BtgI	CCRYGG	1 cut(s)	733
BtsCI	GGATG	4 cut(s)	29, 94, 684, 722
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	5 cut(s)	63, 347, 351, 445, 777
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	1 cut(s)	47
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	2 cut(s)	415, 773
CseI	GACGC	3 cut(s)	218, 384, 629
CsiI	ACCWGGT	1 cut(s)	331
Csp6I	GTAC	2 cut(s)	310, 797
CspAI	ACCGGT	1 cut(s)	374
CviAII	CATG	5 cut(s)	227, 317, 436, 729, 734
CviQI	GTAC	2 cut(s)	310, 797
DdeI	CTNAG	4 cut(s)	5, 247, 431, 676
DpnI	GATC	8 cut(s)	88, 148, 245, 339, 404, 609, 639, 764
DpnII	GATC	8 cut(s)	86, 146, 243, 337, 402, 607, 637, 762
DraIII	CACNNNGTG	1 cut(s)	335
DriI	GACNNNNNGTC	1 cut(s)	413
Eam1104I	CTCTTC	1 cut(s)	606
Eam1105I	GACNNNNNGTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	606
EciI	GGCGGA	1 cut(s)	729
Eco130I	CCWWGG	1 cut(s)	733
Eco32I	GATATC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	579
EcoO109I	RGGNCCY	1 cut(s)	773
EcoRII	CCWGG	3 cut(s)	220, 331, 499
EcoRV	GATATC	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	733
ErhI	CCWWGG	1 cut(s)	733
FaeI	CATG	5 cut(s)	230, 320, 439, 732, 737
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	5 cut(s)	226, 316, 435, 728, 733
Fnu4HI	GCNGC	3 cut(s)	43, 66, 270
FokI	GGATG	4 cut(s)	16, 81, 671, 729
Fsp4HI	GCNGC	3 cut(s)	43, 66, 270
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	3 cut(s)	43, 66, 270
GsaI	CCCAGC	2 cut(s)	74, 345
HaeIII	GGCC	1 cut(s)	775
HapII	CCGG	3 cut(s)	15, 257, 375
HgaI	GACGC	3 cut(s)	218, 384, 629
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	2 cut(s)	210, 252
Hin1II	CATG	5 cut(s)	230, 320, 439, 732, 737
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	2 cut(s)	9, 280
HpaII	CCGG	3 cut(s)	15, 257, 375
HphI	GGTGA	2 cut(s)	347, 716
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	6 cut(s)	133, 194, 208, 250, 407, 432
Hpy188III	TCNNGA	8 cut(s)	84, 144, 227, 370, 418, 605, 641, 791
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	4 cut(s)	115, 150, 294, 375
HpyCH4III	ACNGT	4 cut(s)	265, 511, 517, 809
HpyCH4IV	ACGT	2 cut(s)	252, 483
HpyCH4V	TGCA	4 cut(s)	353, 669, 684, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 266
HpyF3I	CTNAG	4 cut(s)	5, 247, 431, 676
HpySE526I	ACGT	2 cut(s)	252, 483
Hsp92I	GRCGYC	2 cut(s)	210, 252
Hsp92II	CATG	5 cut(s)	230, 320, 439, 732, 737
HspAI	GCGC	1 cut(s)	45
KpnI	GGTACC	1 cut(s)	800
Kzo9I	GATC	8 cut(s)	86, 146, 243, 337, 402, 607, 637, 762
LmnI	GCTCC	1 cut(s)	223
Lsp1109I	GCAGC	2 cut(s)	77, 281
LweI	GCATC	1 cut(s)	693
MabI	ACCWGGT	1 cut(s)	331
MaeII	ACGT	2 cut(s)	252, 483
MaeIII	GTNAC	2 cut(s)	511, 704
MalI	GATC	8 cut(s)	88, 148, 245, 339, 404, 609, 639, 764
MboI	GATC	8 cut(s)	86, 146, 243, 337, 402, 607, 637, 762
MboII	GAAGA	4 cut(s)	279, 289, 572, 593
MflI	RGATCY	3 cut(s)	146, 637, 762
MluCI	AATT	2 cut(s)	169, 422
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	430
MseI	TTAA	1 cut(s)	633
MspI	CCGG	3 cut(s)	15, 257, 375
MspR9I	CCNGG	4 cut(s)	222, 257, 333, 501
MvaI	CCWGG	3 cut(s)	222, 333, 501
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	71, 266
NciI	CCSGG	1 cut(s)	257
NcoI	CCATGG	1 cut(s)	733
NdeII	GATC	8 cut(s)	86, 146, 243, 337, 402, 607, 637, 762
NlaIII	CATG	5 cut(s)	230, 320, 439, 732, 737
NlaIV	GGNNCC	4 cut(s)	639, 764, 774, 798
NmuCI	GTSAC	1 cut(s)	704
NspI	RCATGY	1 cut(s)	439
PagI	TCATGA	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	280
PflMI	CCANNNNNTGG	2 cut(s)	701, 734
PinAI	ACCGGT	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	44, 67, 271
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
Psp6I	CCWGG	3 cut(s)	220, 331, 499
PspFI	CCCAGC	2 cut(s)	70, 341
PspGI	CCWGG	3 cut(s)	220, 331, 499
PspN4I	GGNNCC	4 cut(s)	639, 764, 774, 798
PspPI	GGNCC	2 cut(s)	415, 773
PsuI	RGATCY	3 cut(s)	146, 637, 762
RsaI	GTAC	2 cut(s)	311, 798
RsaNI	GTAC	2 cut(s)	310, 797
SaqAI	TTAA	1 cut(s)	633
SatI	GCNGC	3 cut(s)	43, 66, 270
Sau3AI	GATC	8 cut(s)	86, 146, 243, 337, 402, 607, 637, 762
Sau96I	GGNCC	2 cut(s)	415, 773
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	4 cut(s)	222, 257, 333, 501
SetI	ASST	9 cut(s)	56, 76, 255, 334, 386, 480, 486, 798, 802
SexAI	ACCWGGT	1 cut(s)	331
SfaNI	GCATC	1 cut(s)	693
SinI	GGWCC	1 cut(s)	415
SmlI	CTYRAG	2 cut(s)	473, 791
SmoI	CTYRAG	2 cut(s)	473, 791
Sse9I	AATT	2 cut(s)	169, 422
SsiI	CCGC	2 cut(s)	42, 714
StyD4I	CCNGG	4 cut(s)	220, 255, 331, 499
StyI	CCWWGG	1 cut(s)	733
TaaI	ACNGT	4 cut(s)	265, 511, 517, 809
TaiI	ACGT	2 cut(s)	255, 486
TaqI	TCGA	1 cut(s)	85
TasI	AATT	2 cut(s)	169, 422
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	704
TseI	GCWGC	2 cut(s)	65, 269
Tsp45I	GTSAC	1 cut(s)	704
TspDTI	ATGAA	1 cut(s)	18
TspGWI	ACGGA	1 cut(s)	755
TspRI	CASTG	1 cut(s)	279
Van91I	CCANNNNNTGG	2 cut(s)	701, 734
VpaK11BI	GGWCC	1 cut(s)	415
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	1 cut(s)	439
ZraI	GACGTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.