Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Forward (+)

447033 .. 448899

Gene Structure 1867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1006600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTTGAGGGTTGCAGCGAGGAGGCTCTGTTCTGTGTCCGCGTCGCCATGGAGGTCCAACCAGGCCGCCACCGGCACTGCCACCTCCTCTATCCTGTCTCGAAATCTCATCGACGACCGTGACTCCTCCGATGAGCTCAGATCCGCCTATTTCACCCCTGACTTCTATCTTCCGTCCAGAGGTTTTGTGTCTGGTTCAGTGACCCCATCGCAGGACAACAATCTAGTTCCAGACGTTCCTCCAACTGTCGCAGCCGTCAAGAATCCTAGTTCAAAGATAGTTTATGACGAGTACAACCATGAGCGTTACCCTCCAGGTGACCCCAGCAAGCGTGCATTTGCCTACTTTGTCCTCACAGGTGGTAGGTTTGTCTATGCTTCTCTGATTCGTCTGCTTATCCTTAAGTTTGTGCTAAGCATGTCAGCCAGTAAGGATGTTCTTGCCATGGCCTCGCTCGAGGTTGATCTCTCCAGCATTGAGCCAGGTTCAACTGTGACTGTTAAGTGGCGTGGAAAACCAGTCTTCATCAGACGCCGAACTGACGATGATATCAAGCTGGCAAATAGTGTAGATGTTAATTCTCTCCGTGATCCGCAGCAAGATGCTGAGAGGGTTAAAAACCCGGAATGGCTCATTGTTGTGGGAGTTTGCACGCATCTGGGTTGCATTCCCTTGCCTAATGCTGGTGATTTTGGTGGATGGTTTTGTCCATGCCATGGTTCCCACTATGATATTTCTGGAAGGATCCGCAAGGGACCAGCACCGTACAATCTGGAGGTACCCACTTATTCCTTCTTGGAGGAGAACAAGTTACTGATTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

275

Amino Acids

30.23

Weight (kDa)

8.23

Isoelectric Point (pI)

51.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_TM	PF02921	107 - 145	3.1e-08	Ubiquinol cytochrome reductase transmembrane region
Rieske	PF00355	160 - 259	2.4e-08	Rieske [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	778
AccB1I	GGYRCC	1 cut(s)	778
AccB7I	CCANNNNNTGG	1 cut(s)	716
AccII	CGCG	1 cut(s)	41
AciI	CCGC	5 cut(s)	39, 66, 144, 593, 748
AclWI	GGATC	4 cut(s)	135, 584, 739, 752
AcyI	GRCGYC	1 cut(s)	532
AfaI	GTAC	3 cut(s)	293, 767, 780
AfiI	CCNNNNNNNGG	4 cut(s)	179, 211, 683, 716
AflII	CTTAAG	1 cut(s)	401
AgsI	TTSAA	2 cut(s)	273, 489
AjnI	CCWGG	3 cut(s)	60, 313, 481
AloI	GAACNNNNNNTCC	2 cut(s)	13, 45
AluBI	AGCT	2 cut(s)	136, 556
AluI	AGCT	2 cut(s)	136, 556
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	4 cut(s)	135, 584, 739, 752
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	2 cut(s)	63, 447
ApeKI	GCWGC	3 cut(s)	14, 251, 595
Asp718I	GGTACC	1 cut(s)	778
AspS9I	GGNCC	2 cut(s)	54, 755
AsuC2I	CCSGG	1 cut(s)	623
AsuHPI	GGTGA	3 cut(s)	145, 329, 698
AvaI	CYCGRG	1 cut(s)	455
AvaII	GGWCC	2 cut(s)	54, 755
BamHI	GGATCC	1 cut(s)	744
BanI	GGYRCC	1 cut(s)	778
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	514
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	3 cut(s)	26, 263, 607
BccI	CCATC	2 cut(s)	214, 693
BceAI	ACGGC	1 cut(s)	239
BciT130I	CCWGG	3 cut(s)	62, 315, 483
BcnI	CCSGG	1 cut(s)	623
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	2 cut(s)	224, 267
BfrI	CTTAAG	1 cut(s)	401
BisI	GCNGC	4 cut(s)	15, 66, 252, 596
BlpI	GCTNAGC	1 cut(s)	413
BlsI	GCNGC	4 cut(s)	16, 67, 253, 597
Bme1390I	CCNGG	4 cut(s)	62, 315, 483, 623
Bme18I	GGWCC	2 cut(s)	54, 755
BmeT110I	CYCGRG	1 cut(s)	455
BmgT120I	GGNCC	2 cut(s)	54, 755
BmiI	GGNNCC	4 cut(s)	721, 746, 756, 780
BmrFI	CCNGG	4 cut(s)	62, 315, 483, 623
BmsI	GCATC	2 cut(s)	592, 664
BpiI	GAAGAC	1 cut(s)	514
BpmI	CTGGAG	3 cut(s)	297, 454, 794
Bpu1102I	GCTNAGC	1 cut(s)	413
BpuMI	CCSGG	1 cut(s)	623
BsaHI	GRCGYC	1 cut(s)	532
BsaJI	CCNNGG	3 cut(s)	47, 444, 715
BsaXI	ACNNNNNCTCC	6 cut(s)	13, 43, 107, 137, 794, 824
Bsc4I	CCNNNNNNNGG	4 cut(s)	179, 211, 683, 716
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	2 cut(s)	426, 518
BseBI	CCWGG	3 cut(s)	62, 315, 483
BseDI	CCNNGG	3 cut(s)	47, 444, 715
BseGI	GGATG	2 cut(s)	439, 704
BseLI	CCNNNNNNNGG	4 cut(s)	179, 211, 683, 716
BseMII	CTCAG	2 cut(s)	151, 597
BseNI	ACTGG	2 cut(s)	426, 518
BseRI	GAGGAG	4 cut(s)	34, 76, 115, 815
BseXI	GCAGC	3 cut(s)	26, 263, 607
BseYI	CCCAGC	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	41
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	2 cut(s)	65, 449
BshNI	GGYRCC	1 cut(s)	778
BsiEI	CGRYCG	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	2 cut(s)	72, 623
BslFI	GGGAC	1 cut(s)	768
BslI	CCNNNNNNNGG	4 cut(s)	179, 211, 683, 716
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	768
BsmI	GAATGC	1 cut(s)	666
BsnI	GGCC	2 cut(s)	65, 449
BsoBI	CYCGRG	1 cut(s)	455
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	4 cut(s)	140, 463, 589, 744
Bsp1720I	GCTNAGC	1 cut(s)	413
Bsp19I	CCATGG	3 cut(s)	47, 444, 715
BspACI	CCGC	5 cut(s)	39, 66, 144, 593, 748
BspANI	GGCC	2 cut(s)	65, 449
BspCNI	CTCAG	2 cut(s)	150, 598
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	4 cut(s)	721, 746, 756, 780
BspPI	GGATC	4 cut(s)	135, 584, 739, 752
BspT107I	GGYRCC	1 cut(s)	778
BspTI	CTTAAG	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	2 cut(s)	426, 518
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	3 cut(s)	47, 444, 715
BssMI	GATC	4 cut(s)	140, 463, 589, 744
BssNI	GRCGYC	1 cut(s)	532
BssT1I	CCWWGG	3 cut(s)	47, 444, 715
Bst2UI	CCWGG	3 cut(s)	62, 315, 483
Bst4CI	ACNGT	5 cut(s)	119, 247, 493, 499, 765
BstACI	GRCGYC	1 cut(s)	532
BstAFI	CTTAAG	1 cut(s)	401
BstC8I	GCNNGC	4 cut(s)	329, 333, 558, 653
BstDEI	CTNAG	3 cut(s)	137, 413, 606
BstDSI	CCRYGG	3 cut(s)	47, 444, 715
BstEII	GGTNACC	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	439, 704
BstFNI	CGCG	1 cut(s)	41
BstKTI	GATC	4 cut(s)	143, 466, 592, 747
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	4 cut(s)	140, 463, 589, 744
BstMCI	CGRYCG	1 cut(s)	118
BstNI	CCWGG	3 cut(s)	62, 315, 483
BstNSI	RCATGY	1 cut(s)	421
BstPI	GGTNACC	1 cut(s)	317
BstSCI	CCNGG	4 cut(s)	60, 313, 481, 621
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	3 cut(s)	26, 263, 607
BstV2I	GAAGAC	1 cut(s)	514
BstX2I	RGATCY	2 cut(s)	140, 744
BstYI	RGATCY	2 cut(s)	140, 744
BsuRI	GGCC	2 cut(s)	65, 449
BtgI	CCRYGG	3 cut(s)	47, 444, 715
BtgZI	GCGATG	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	439, 704
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	2 cut(s)	75, 204
Cac8I	GCNNGC	4 cut(s)	329, 333, 558, 653
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	2 cut(s)	54, 755
CseI	GACGC	2 cut(s)	30, 540
Csp6I	GTAC	3 cut(s)	292, 766, 779
CviAII	CATG	6 cut(s)	48, 299, 418, 445, 711, 716
CviQI	GTAC	3 cut(s)	292, 766, 779
DdeI	CTNAG	3 cut(s)	137, 413, 606
DpnI	GATC	4 cut(s)	142, 465, 591, 746
DpnII	GATC	4 cut(s)	140, 463, 589, 744
EciI	GGCGGA	1 cut(s)	133
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	3 cut(s)	47, 444, 715
Eco24I	GRGCYC	1 cut(s)	138
Eco32I	GATATC	1 cut(s)	550
Eco47I	GGWCC	2 cut(s)	54, 755
Eco53kI	GAGCTC	1 cut(s)	136
Eco88I	CYCGRG	1 cut(s)	455
Eco91I	GGTNACC	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	136
EcoO65I	GGTNACC	1 cut(s)	317
EcoRII	CCWGG	3 cut(s)	60, 313, 481
EcoRV	GATATC	1 cut(s)	550
EcoT14I	CCWWGG	3 cut(s)	47, 444, 715
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	3 cut(s)	47, 444, 715
FaeI	CATG	6 cut(s)	51, 302, 421, 448, 714, 719
FaiI	YATR	9 cut(s)	49, 285, 300, 375, 419, 446, 712, 717, 729
FaqI	GGGAC	1 cut(s)	768
FatI	CATG	6 cut(s)	47, 298, 417, 444, 710, 715
Fnu4HI	GCNGC	4 cut(s)	15, 66, 252, 596
FokI	GGATG	2 cut(s)	446, 711
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	4 cut(s)	15, 66, 252, 596
FspBI	CTAG	2 cut(s)	224, 267
GluI	GCNGC	4 cut(s)	15, 66, 252, 596
GsaI	CCCAGC	1 cut(s)	327
GsuI	CTGGAG	3 cut(s)	297, 454, 794
HaeIII	GGCC	2 cut(s)	65, 449
HapII	CCGG	2 cut(s)	72, 623
HgaI	GACGC	2 cut(s)	30, 540
Hin1I	GRCGYC	1 cut(s)	532
Hin1II	CATG	6 cut(s)	51, 302, 421, 448, 714, 719
HinfI	GANTC	3 cut(s)	122, 262, 385
HpaII	CCGG	2 cut(s)	72, 623
HphI	GGTGA	3 cut(s)	145, 329, 698
Hpy188I	TCNGA	4 cut(s)	130, 140, 384, 530
Hpy188III	TCNNGA	6 cut(s)	99, 177, 230, 259, 738, 773
Hpy99I	CGWCG	2 cut(s)	46, 116
HpyAV	CCTTC	2 cut(s)	735, 802
HpyCH4III	ACNGT	5 cut(s)	119, 247, 493, 499, 765
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	4 cut(s)	14, 335, 651, 666
HpyF3I	CTNAG	3 cut(s)	137, 413, 606
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	532
Hsp92II	CATG	6 cut(s)	51, 302, 421, 448, 714, 719
KpnI	GGTACC	1 cut(s)	782
Kzo9I	GATC	4 cut(s)	140, 463, 589, 744
Lsp1109I	GCAGC	3 cut(s)	26, 263, 607
LweI	GCATC	2 cut(s)	592, 664
MaeI	CTAG	2 cut(s)	224, 267
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	6 cut(s)	119, 199, 305, 317, 493, 810
MalI	GATC	4 cut(s)	142, 465, 591, 746
MboI	GATC	4 cut(s)	140, 463, 589, 744
MboII	GAAGA	2 cut(s)	161, 514
MflI	RGATCY	2 cut(s)	140, 744
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	1 cut(s)	577
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	81, 266
MseI	TTAA	4 cut(s)	402, 501, 576, 615
MslI	CAYNNNNRTG	1 cut(s)	638
MspCI	CTTAAG	1 cut(s)	401
MspI	CCGG	2 cut(s)	72, 623
MspR9I	CCNGG	4 cut(s)	62, 315, 483, 623
Mva1269I	GAATGC	1 cut(s)	666
MvaI	CCWGG	3 cut(s)	62, 315, 483
MvnI	CGCG	1 cut(s)	41
NciI	CCSGG	1 cut(s)	623
NcoI	CCATGG	3 cut(s)	47, 444, 715
NdeII	GATC	4 cut(s)	140, 463, 589, 744
NlaIII	CATG	6 cut(s)	51, 302, 421, 448, 714, 719
NlaIV	GGNNCC	4 cut(s)	721, 746, 756, 780
NmuCI	GTSAC	4 cut(s)	119, 199, 317, 493
NspI	RCATGY	1 cut(s)	421
PaeR7I	CTCGAG	1 cut(s)	455
PctI	GAATGC	1 cut(s)	666
PfeI	GAWTC	2 cut(s)	262, 385
PflMI	CCANNNNNTGG	1 cut(s)	716
PkrI	GCNGC	4 cut(s)	16, 67, 253, 597
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	138
Psp6I	CCWGG	3 cut(s)	60, 313, 481
PspEI	GGTNACC	1 cut(s)	317
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	3 cut(s)	60, 313, 481
PspN4I	GGNNCC	4 cut(s)	721, 746, 756, 780
PspPI	GGNCC	2 cut(s)	54, 755
PspXI	VCTCGAGB	1 cut(s)	455
PsuI	RGATCY	2 cut(s)	140, 744
RsaI	GTAC	3 cut(s)	293, 767, 780
RsaNI	GTAC	3 cut(s)	292, 766, 779
RseI	CAYNNNNRTG	1 cut(s)	638
SacI	GAGCTC	1 cut(s)	138
SaqAI	TTAA	4 cut(s)	402, 501, 576, 615
SatI	GCNGC	4 cut(s)	15, 66, 252, 596
Sau3AI	GATC	4 cut(s)	140, 463, 589, 744
Sau96I	GGNCC	2 cut(s)	54, 755
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	4 cut(s)	62, 315, 483, 623
SduI	GDGCHC	1 cut(s)	138
SfaNI	GCATC	2 cut(s)	592, 664
Sfr274I	CTCGAG	1 cut(s)	455
SinI	GGWCC	2 cut(s)	54, 755
SlaI	CTCGAG	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	638
SmlI	CTYRAG	2 cut(s)	401, 455
SmoI	CTYRAG	2 cut(s)	401, 455
Sse9I	AATT	1 cut(s)	577
SsiI	CCGC	5 cut(s)	39, 66, 144, 593, 748
SspMI	CTAG	2 cut(s)	224, 267
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	4 cut(s)	60, 313, 481, 621
StyI	CCWWGG	3 cut(s)	47, 444, 715
TaaI	ACNGT	5 cut(s)	119, 247, 493, 499, 765
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	3 cut(s)	100, 111, 456
TasI	AATT	1 cut(s)	577
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	2 cut(s)	262, 385
Tru1I	TTAA	4 cut(s)	402, 501, 576, 615
Tru9I	TTAA	4 cut(s)	402, 501, 576, 615
TscAI	CASTG	2 cut(s)	82, 204
TseFI	GTSAC	4 cut(s)	119, 199, 317, 493
TseI	GCWGC	3 cut(s)	14, 251, 595
Tsp45I	GTSAC	4 cut(s)	119, 199, 317, 493
TspDTI	ATGAA	1 cut(s)	514
TspGWI	ACGGA	2 cut(s)	162, 575
TspRI	CASTG	2 cut(s)	82, 204
Van91I	CCANNNNNTGG	1 cut(s)	716
Vha464I	CTTAAG	1 cut(s)	401
VpaK11BI	GGWCC	2 cut(s)	54, 755
XceI	RCATGY	1 cut(s)	421
XhoI	CTCGAG	1 cut(s)	455
XspI	CTAG	2 cut(s)	224, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.