Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Reverse (-)

22761101 .. 22763241

Gene Structure 2141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G214500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCTGCGAGTCGCGGGAAGAAGGCTTTCATCTTCTGCAGTGGCTTGGAGGTCGTCGCAGACAACCCCAGCCTTTGTCTCTGGATCTCATCCGCTTTTCAATAACAACGACGACTCTTCCCCCGATGGCCCTTCCAGATCCCCCAATCAATTTTTCTTCCATTCCCATTTTCCATCTCTGATCAGAGGATTTTCCTCTGAAGCCCTTGCTCCCGGACATGATATTGGTCTTATCTCAGAAATCCCAGCTACCGTGGCAGCTGTGAAGAATCCTTCTTCAAAAATTGTATATGATGAGTACAACCATGAAAGATATCCACCTGGTGACCCCAGCAAGCGGGCATTTGCTTATTTCATCTTGACAGGTGGCAGATTTGTGTATGCCTCCTTGATCCGGCTTCTGGTCCTCAAGTTTGTACTGAGCATGTCTGCCAGCAAAGATGTCCTTGCCCTTGCTTCCCTTGAGGTTGATCTGTCCAGCATTGAGCCTGGTACTACTGTTACTGTGAAGTGGAGGGGGAAGCCTGTTTTTATTAGGCGTAGGACTGAAGATGACATCAAGTTGGCTAATAGTGTAGATGTTCAGTCCCTTCGTGACCCCCAACAGGATGCAGAGAGGGTTAAGAATCCAGAATGGCTTGTTGTTGTTGGGGTCTGCACTCACTTAGGATGCATCCCCTTGCCAAATGCTGGTGATTTTGGTGGTTGGTTTTGCCCATGCCATGGTTCGCACTACGACATTTCTGGCAGGATCCGCAAGGGACCTGCACCATACAATCTAGAGGTACCCACTTACAGTTTTTTGAGTGAGAACAAGCTGCTGGTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0006091 GO:0006950 GO:0008121 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016679 GO:0016681 GO:0019866 GO:0022900 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046872 GO:0050896 GO:0055114 GO:0070069 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

277

Amino Acids

30.32

Weight (kDa)

8.65

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	772
Acc65I	GGTACC	1 cut(s)	784
AccB1I	GGYRCC	1 cut(s)	784
AccB7I	CCANNNNNTGG	2 cut(s)	689, 722
AccII	CGCG	1 cut(s)	14
AciI	CCGC	4 cut(s)	14, 92, 337, 754
AclWI	GGATC	5 cut(s)	91, 132, 385, 745, 758
AcuI	CTGAAG	2 cut(s)	219, 567
AdeI	CACNNNGTG	1 cut(s)	323
AfaI	GTAC	4 cut(s)	299, 417, 493, 786
AfiI	CCNNNNNNNGG	6 cut(s)	336, 393, 400, 604, 689, 722
AgsI	TTSAA	2 cut(s)	100, 279
AjnI	CCWGG	2 cut(s)	319, 487
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	3 cut(s)	248, 260, 817
AluI	AGCT	3 cut(s)	248, 260, 817
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	5 cut(s)	91, 132, 385, 745, 758
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	3 cut(s)	4, 257, 817
Asp700I	GAANNNNTTC	1 cut(s)	25
Asp718I	GGTACC	1 cut(s)	784
AspS9I	GGNCC	3 cut(s)	128, 403, 761
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	335, 704
AvaII	GGWCC	2 cut(s)	403, 761
BaeI	ACNNNNGTAYC	2 cut(s)	483, 516
BamHI	GGATCC	1 cut(s)	750
BanI	GGYRCC	1 cut(s)	784
BbvI	GCAGC	2 cut(s)	269, 804
BccI	CCATC	2 cut(s)	119, 181
BciT130I	CCWGG	2 cut(s)	321, 489
BclI	TGATCA	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	1 cut(s)	779
BfmI	CTRYAG	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	772
BisI	GCNGC	3 cut(s)	5, 258, 818
BlsI	GCNGC	3 cut(s)	6, 259, 819
Bme1390I	CCNGG	3 cut(s)	213, 321, 489
Bme18I	GGWCC	2 cut(s)	403, 761
BmgT120I	GGNCC	3 cut(s)	128, 403, 761
BmiI	GGNNCC	3 cut(s)	752, 762, 786
BmrFI	CCNGG	3 cut(s)	213, 321, 489
BmsI	GCATC	3 cut(s)	598, 659, 681
BpuEI	CTTGAG	2 cut(s)	392, 482
BpuMI	CCSGG	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	252, 721
Bsc4I	CCNNNNNNNGG	6 cut(s)	336, 393, 400, 604, 689, 722
BseBI	CCWGG	2 cut(s)	321, 489
BseDI	CCNNGG	2 cut(s)	252, 721
BseGI	GGATG	4 cut(s)	88, 613, 672, 674
BseLI	CCNNNNNNNGG	6 cut(s)	336, 393, 400, 604, 689, 722
BseMII	CTCAG	2 cut(s)	249, 410
BseXI	GCAGC	2 cut(s)	269, 804
BseYI	CCCAGC	3 cut(s)	67, 244, 329
BsgI	GTGCAG	2 cut(s)	640, 750
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	129
BshNI	GGYRCC	1 cut(s)	784
BsiSI	CCGG	2 cut(s)	213, 394
BslFI	GGGAC	2 cut(s)	571, 774
BslI	CCNNNNNNNGG	6 cut(s)	336, 393, 400, 604, 689, 722
BsmAI	GTCTC	1 cut(s)	82
BsmFI	GGGAC	2 cut(s)	571, 774
BsnI	GGCC	1 cut(s)	129
Bsp143I	GATC	6 cut(s)	83, 137, 180, 390, 469, 750
Bsp19I	CCATGG	1 cut(s)	721
BspACI	CCGC	4 cut(s)	14, 92, 337, 754
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	2 cut(s)	248, 411
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	3 cut(s)	752, 762, 786
BspMAI	CTGCAG	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	772
BspPI	GGATC	5 cut(s)	91, 132, 385, 745, 758
BspT107I	GGYRCC	1 cut(s)	784
BssECI	CCNNGG	2 cut(s)	252, 721
BssMI	GATC	6 cut(s)	83, 137, 180, 390, 469, 750
BssT1I	CCWWGG	1 cut(s)	721
Bst2UI	CCWGG	2 cut(s)	321, 489
Bst4CI	ACNGT	4 cut(s)	253, 499, 505, 797
Bst6I	CTCTTC	1 cut(s)	121
BstC8I	GCNNGC	3 cut(s)	335, 339, 433
BstDEI	CTNAG	3 cut(s)	235, 419, 664
BstDSI	CCRYGG	2 cut(s)	252, 721
BstEII	GGTNACC	1 cut(s)	323
BstF5I	GGATG	4 cut(s)	88, 613, 672, 674
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	6 cut(s)	86, 140, 183, 393, 472, 753
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	6 cut(s)	83, 137, 180, 390, 469, 750
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 753
BstNI	CCWGG	2 cut(s)	321, 489
BstNSI	RCATGY	1 cut(s)	427
BstPI	GGTNACC	1 cut(s)	323
BstSCI	CCNGG	3 cut(s)	211, 319, 487
BstSFI	CTRYAG	1 cut(s)	36
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	269, 804
BstX2I	RGATCY	3 cut(s)	83, 137, 750
BstYI	RGATCY	3 cut(s)	83, 137, 750
BsuRI	GGCC	1 cut(s)	129
BtgI	CCRYGG	2 cut(s)	252, 721
BtsCI	GGATG	4 cut(s)	88, 613, 672, 674
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	45
BveI	ACCTGC	1 cut(s)	772
Cac8I	GCNNGC	3 cut(s)	335, 339, 433
Cfr13I	GGNCC	3 cut(s)	128, 403, 761
CsiI	ACCWGGT	1 cut(s)	319
Csp6I	GTAC	4 cut(s)	298, 416, 492, 785
CviAII	CATG	5 cut(s)	218, 305, 424, 717, 722
CviQI	GTAC	4 cut(s)	298, 416, 492, 785
DdeI	CTNAG	3 cut(s)	235, 419, 664
DpnI	GATC	6 cut(s)	85, 139, 182, 392, 471, 752
DpnII	GATC	6 cut(s)	83, 137, 180, 390, 469, 750
DraIII	CACNNNGTG	1 cut(s)	323
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	721
Eco32I	GATATC	1 cut(s)	314
Eco47I	GGWCC	2 cut(s)	403, 761
Eco57I	CTGAAG	2 cut(s)	219, 567
Eco91I	GGTNACC	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	761
EcoO65I	GGTNACC	1 cut(s)	323
EcoRII	CCWGG	2 cut(s)	319, 487
EcoRV	GATATC	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	721
EcoT22I	ATGCAT	1 cut(s)	674
ErhI	CCWWGG	1 cut(s)	721
FaeI	CATG	5 cut(s)	221, 308, 427, 720, 725
FaiI	YATR	9 cut(s)	219, 289, 291, 306, 381, 425, 718, 723, 772
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	2 cut(s)	571, 774
FatI	CATG	5 cut(s)	217, 304, 423, 716, 721
FauI	CCCGC	2 cut(s)	7, 330
FbaI	TGATCA	1 cut(s)	180
Fnu4HI	GCNGC	3 cut(s)	5, 258, 818
FokI	GGATG	4 cut(s)	75, 620, 659, 681
Fsp4HI	GCNGC	3 cut(s)	5, 258, 818
FspBI	CTAG	1 cut(s)	779
GluI	GCNGC	3 cut(s)	5, 258, 818
GsaI	CCCAGC	3 cut(s)	71, 248, 333
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	2 cut(s)	213, 394
Hin1II	CATG	5 cut(s)	221, 308, 427, 720, 725
HinfI	GANTC	4 cut(s)	9, 113, 268, 625
HpaII	CCGG	2 cut(s)	213, 394
HphI	GGTGA	2 cut(s)	335, 704
Hpy188I	TCNGA	4 cut(s)	180, 185, 199, 238
Hpy188III	TCNNGA	6 cut(s)	81, 135, 358, 593, 629, 779
Hpy99I	CGWCG	2 cut(s)	58, 113
HpyAV	CCTTC	4 cut(s)	15, 141, 282, 599
HpyCH4III	ACNGT	4 cut(s)	253, 499, 505, 797
HpyCH4V	TGCA	5 cut(s)	38, 611, 657, 672, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 753
HpyF3I	CTNAG	3 cut(s)	235, 419, 664
Hsp92II	CATG	5 cut(s)	221, 308, 427, 720, 725
KpnI	GGTACC	1 cut(s)	788
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	6 cut(s)	83, 137, 180, 390, 469, 750
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	2 cut(s)	269, 804
LweI	GCATC	3 cut(s)	598, 659, 681
MabI	ACCWGGT	1 cut(s)	319
MaeI	CTAG	1 cut(s)	779
MaeIII	GTNAC	3 cut(s)	323, 499, 593
MalI	GATC	6 cut(s)	85, 139, 182, 392, 471, 752
MboI	GATC	6 cut(s)	83, 137, 180, 390, 469, 750
MboII	GAAGA	7 cut(s)	24, 30, 108, 148, 267, 277, 560
MflI	RGATCY	3 cut(s)	83, 137, 750
MluCI	AATT	2 cut(s)	149, 282
MlyI	GAGTC	2 cut(s)	18, 107
MmeI	TCCRAC	1 cut(s)	805
MnlI	CCTC	9 cut(s)	42, 179, 205, 394, 416, 457, 507, 609, 775
Mph1103I	ATGCAT	1 cut(s)	674
MroXI	GAANNNNTTC	1 cut(s)	25
MseI	TTAA	1 cut(s)	621
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	2 cut(s)	213, 394
MspR9I	CCNGG	3 cut(s)	213, 321, 489
MvaI	CCWGG	2 cut(s)	321, 489
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	254, 753
NciI	CCSGG	1 cut(s)	213
NcoI	CCATGG	1 cut(s)	721
NdeII	GATC	6 cut(s)	83, 137, 180, 390, 469, 750
NlaIII	CATG	5 cut(s)	221, 308, 427, 720, 725
NlaIV	GGNNCC	3 cut(s)	752, 762, 786
NmuCI	GTSAC	2 cut(s)	323, 593
NsiI	ATGCAT	1 cut(s)	674
NspI	RCATGY	1 cut(s)	427
PdmI	GAANNNNTTC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	268, 625
PflMI	CCANNNNNTGG	2 cut(s)	689, 722
PfoI	TCCNGGA	1 cut(s)	211
PkrI	GCNGC	3 cut(s)	6, 259, 819
PleI	GAGTC	2 cut(s)	17, 107
PpsI	GAGTC	2 cut(s)	17, 107
PpuMI	RGGWCCY	1 cut(s)	761
Psp5II	RGGWCCY	1 cut(s)	761
Psp6I	CCWGG	2 cut(s)	319, 487
PspEI	GGTNACC	1 cut(s)	323
PspFI	CCCAGC	3 cut(s)	67, 244, 329
PspGI	CCWGG	2 cut(s)	319, 487
PspN4I	GGNNCC	3 cut(s)	752, 762, 786
PspPI	GGNCC	3 cut(s)	128, 403, 761
PspPPI	RGGWCCY	1 cut(s)	761
PstI	CTGCAG	1 cut(s)	40
PsuI	RGATCY	3 cut(s)	83, 137, 750
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	4 cut(s)	299, 417, 493, 786
RsaNI	GTAC	4 cut(s)	298, 416, 492, 785
SaqAI	TTAA	1 cut(s)	621
SatI	GCNGC	3 cut(s)	5, 258, 818
Sau3AI	GATC	6 cut(s)	83, 137, 180, 390, 469, 750
Sau96I	GGNCC	3 cut(s)	128, 403, 761
SchI	GAGTC	2 cut(s)	18, 107
ScrFI	CCNGG	3 cut(s)	213, 321, 489
SetI	ASST	9 cut(s)	53, 250, 262, 322, 367, 468, 766, 786, 819
SexAI	ACCWGGT	1 cut(s)	319
SfaNI	GCATC	3 cut(s)	598, 659, 681
SfcI	CTRYAG	1 cut(s)	36
SinI	GGWCC	2 cut(s)	403, 761
SmlI	CTYRAG	2 cut(s)	407, 461
SmoI	CTYRAG	2 cut(s)	407, 461
Sse9I	AATT	2 cut(s)	149, 282
SsiI	CCGC	4 cut(s)	14, 92, 337, 754
SspMI	CTAG	1 cut(s)	779
StyD4I	CCNGG	3 cut(s)	211, 319, 487
StyI	CCWWGG	1 cut(s)	721
TaaI	ACNGT	4 cut(s)	253, 499, 505, 797
TasI	AATT	2 cut(s)	149, 282
TatI	WGTACW	2 cut(s)	297, 415
TfiI	GAWTC	2 cut(s)	268, 625
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	2 cut(s)	323, 593
TseI	GCWGC	3 cut(s)	4, 257, 817
Tsp45I	GTSAC	2 cut(s)	323, 593
TspDTI	ATGAA	3 cut(s)	18, 321, 343
TspRI	CASTG	1 cut(s)	45
Van91I	CCANNNNNTGG	2 cut(s)	689, 722
VpaK11BI	GGWCC	2 cut(s)	403, 761
XbaI	TCTAGA	1 cut(s)	778
XceI	RCATGY	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	25
XspI	CTAG	1 cut(s)	779
Zsp2I	ATGCAT	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.