Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Reverse (-)

53768561 .. 53771210

Gene Structure 2650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39769

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCTGAGAGTCGCCGGAAGAAGGCTTTCCTCCTCTGTAGGCGGCGCGTGGAGGTCGTCGCAGACATCTCCAGCCGTCCTCTCTCGATCCCATCCACTTTCCTTCAACAACAACGACGAGTCGTCCTCCGATGTCCCTTCCAGATCCCCCATCCACTATTCGCAATCTCCATTTCTCATCAGAGGATTTTCCTCTGATGCCCTCGCTCCTGGACATGATTTTGGTGGTATGATCTCAGACGTCCCAGCTACTGTGGCAGCAGTGAAGAATCCTTCTTCAAAGATTGTATATGATGACTACAACCATGAAAGATACCCACCTGGGGATCCCAGCAAGCGTGCATTTGCTTATTTTGTCTTGACAGGTGGAAGGTTTGTGTATGCATCCTTGATCCGGCTTCTGGTCCTCAAGTTTGTTTTGAGCATGTCTGCCAGCAAAGATGTCCTTGCTCTTGCTTCCCTTGAGGTTGACCTATCCAGCATTGAGCCTGGCAGTACTGTTACTGTCAAGTGGAGGGGGAAGCCAGTTTTTATTAGGCGTAGAACTGAAGATGACATCAAGTTGGCTAATAGTATTGATGTTCAGTCACTTCGTGATCCTCAACAGGACTCAGAGAGGGTTAAGGATCCAGAATGGCTTATTGTTGTTGGGGTCTGCACTCACTTGGGGTGCATCCCCTTGCCAAATGCTGGTGACTTTGGCGGATGGTTTTGCCCATGCCATGGTTCACACTATGACATTTCTGGTAGGATCCGCAAGGGGCCTGCACCCTACAATCTTGAGGTACCCACTTACAGTTTTTTGACCGAGAACAAGTTACTCATTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0006091 GO:0006950 GO:0008121 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016679 GO:0016681 GO:0019866 GO:0022900 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046872 GO:0050896 GO:0055114 GO:0070069 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

276

Amino Acids

30.23

Weight (kDa)

8.63

Isoelectric Point (pI)

65.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_TM	PF02921	109 - 147	1.2e-08	Ubiquinol cytochrome reductase transmembrane region
Rieske	PF00355	202 - 261	1.7e-08	Rieske [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	243
Acc65I	GGTACC	1 cut(s)	784
AccB1I	GGYRCC	1 cut(s)	784
AccB7I	CCANNNNNTGG	2 cut(s)	689, 722
AccII	CGCG	1 cut(s)	47
AciI	CCGC	3 cut(s)	42, 702, 754
AcuI	CTGAAG	1 cut(s)	567
AcyI	GRCGYC	1 cut(s)	240
AdeI	CACNNNGTG	1 cut(s)	593
AfaI	GTAC	2 cut(s)	496, 786
AfiI	CCNNNNNNNGG	6 cut(s)	21, 322, 393, 400, 689, 722
AgsI	TTSAA	2 cut(s)	106, 279
AhdI	GACNNNNNGTC	1 cut(s)	121
AjnI	CCWGG	3 cut(s)	208, 319, 487
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
AlwNI	CAGNNNCTG	1 cut(s)	251
AoxI	GGCC	1 cut(s)	761
ApeKI	GCWGC	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	25
Asp718I	GGTACC	1 cut(s)	784
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	403, 761
AsuHPI	GGTGA	1 cut(s)	704
AvaII	GGWCC	1 cut(s)	403
BamHI	GGATCC	3 cut(s)	325, 625, 750
BanI	GGYRCC	1 cut(s)	784
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	3 cut(s)	99, 158, 699
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	3 cut(s)	210, 321, 489
BfmI	CTRYAG	1 cut(s)	36
BisI	GCNGC	2 cut(s)	43, 258
BlsI	GCNGC	2 cut(s)	44, 259
BmcAI	AGTACT	1 cut(s)	496
Bme1390I	CCNGG	3 cut(s)	210, 321, 489
Bme18I	GGWCC	1 cut(s)	403
BmeRI	GACNNNNNGTC	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	403, 761
BmiI	GGNNCC	5 cut(s)	327, 627, 752, 762, 786
BmrFI	CCNGG	3 cut(s)	210, 321, 489
BmsI	GCATC	3 cut(s)	187, 392, 681
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
BpmI	CTGGAG	1 cut(s)	54
BpuEI	CTTGAG	3 cut(s)	392, 482, 800
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	320, 721
Bsc4I	CCNNNNNNNGG	6 cut(s)	21, 322, 393, 400, 689, 722
Bse1I	ACTGG	1 cut(s)	524
BseBI	CCWGG	3 cut(s)	210, 321, 489
BseDI	CCNNGG	2 cut(s)	320, 721
BseGI	GGATG	5 cut(s)	91, 150, 383, 672, 710
BseLI	CCNNNNNNNGG	6 cut(s)	21, 322, 393, 400, 689, 722
BseMII	CTCAG	2 cut(s)	249, 624
BseNI	ACTGG	1 cut(s)	524
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	269
BseYI	CCCAGC	2 cut(s)	244, 329
BsgI	GTGCAG	2 cut(s)	640, 750
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	763
BshNI	GGYRCC	1 cut(s)	784
BsiSI	CCGG	2 cut(s)	15, 394
BslFI	GGGAC	2 cut(s)	119, 227
BslI	CCNNNNNNNGG	6 cut(s)	21, 322, 393, 400, 689, 722
BsmFI	GGGAC	2 cut(s)	119, 227
BsnI	GGCC	1 cut(s)	763
Bsp143I	GATC	8 cut(s)	86, 143, 231, 325, 390, 595, 625, 750
Bsp19I	CCATGG	1 cut(s)	721
BspACI	CCGC	3 cut(s)	42, 702, 754
BspANI	GGCC	1 cut(s)	763
BspCNI	CTCAG	2 cut(s)	248, 623
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	5 cut(s)	327, 627, 752, 762, 786
BspT107I	GGYRCC	1 cut(s)	784
BsrI	ACTGG	1 cut(s)	524
BssECI	CCNNGG	2 cut(s)	320, 721
BssMI	GATC	8 cut(s)	86, 143, 231, 325, 390, 595, 625, 750
BssNI	GRCGYC	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	721
Bst2UI	CCWGG	3 cut(s)	210, 321, 489
Bst4CI	ACNGT	4 cut(s)	253, 499, 505, 797
BstACI	GRCGYC	1 cut(s)	240
BstC8I	GCNNGC	4 cut(s)	335, 339, 433, 765
BstDEI	CTNAG	3 cut(s)	5, 235, 610
BstDSI	CCRYGG	1 cut(s)	721
BstF5I	GGATG	5 cut(s)	91, 150, 383, 672, 710
BstFNI	CGCG	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	8 cut(s)	89, 146, 234, 328, 393, 598, 628, 753
BstMBI	GATC	8 cut(s)	86, 143, 231, 325, 390, 595, 625, 750
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	3 cut(s)	210, 321, 489
BstNSI	RCATGY	1 cut(s)	427
BstSCI	CCNGG	3 cut(s)	208, 319, 487
BstSFI	CTRYAG	1 cut(s)	36
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	269
BstX2I	RGATCY	4 cut(s)	143, 325, 625, 750
BstYI	RGATCY	4 cut(s)	143, 325, 625, 750
BsuRI	GGCC	1 cut(s)	763
BtgI	CCRYGG	1 cut(s)	721
BtsCI	GGATG	5 cut(s)	91, 150, 383, 672, 710
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	4 cut(s)	335, 339, 433, 765
CaiI	CAGNNNCTG	1 cut(s)	251
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	403, 761
Csp6I	GTAC	2 cut(s)	495, 785
CviAII	CATG	5 cut(s)	215, 305, 424, 717, 722
CviJI	RGCY	9 cut(s)	25, 74, 248, 397, 487, 523, 566, 637, 763
CviKI_1	RGCY	9 cut(s)	25, 74, 248, 397, 487, 523, 566, 637, 763
CviQI	GTAC	2 cut(s)	495, 785
DdeI	CTNAG	3 cut(s)	5, 235, 610
DpnI	GATC	8 cut(s)	88, 145, 233, 327, 392, 597, 627, 752
DpnII	GATC	8 cut(s)	86, 143, 231, 325, 390, 595, 625, 750
DraIII	CACNNNGTG	1 cut(s)	593
DriI	GACNNNNNGTC	1 cut(s)	121
Eam1105I	GACNNNNNGTC	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	717
Eco130I	CCWWGG	1 cut(s)	721
Eco47I	GGWCC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	567
EcoO109I	RGGNCCY	1 cut(s)	761
EcoRII	CCWGG	3 cut(s)	208, 319, 487
EcoT14I	CCWWGG	1 cut(s)	721
EcoT22I	ATGCAT	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	721
FaeI	CATG	5 cut(s)	218, 308, 427, 720, 725
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	2 cut(s)	119, 227
FatI	CATG	5 cut(s)	214, 304, 423, 716, 721
Fnu4HI	GCNGC	2 cut(s)	43, 258
FokI	GGATG	5 cut(s)	78, 137, 370, 659, 717
Fsp4HI	GCNGC	2 cut(s)	43, 258
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	2 cut(s)	43, 258
GsaI	CCCAGC	2 cut(s)	248, 333
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	763
HapII	CCGG	2 cut(s)	15, 394
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	5 cut(s)	218, 308, 427, 720, 725
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	4 cut(s)	9, 119, 268, 608
HpaII	CCGG	2 cut(s)	15, 394
HphI	GGTGA	1 cut(s)	704
Hpy166II	GTNNAC	2 cut(s)	469, 728
Hpy188I	TCNGA	5 cut(s)	130, 182, 196, 238, 613
Hpy188III	TCNNGA	6 cut(s)	84, 141, 358, 593, 629, 779
Hpy8I	GTNNAC	2 cut(s)	469, 728
Hpy99I	CGWCG	2 cut(s)	61, 119
HpyAV	CCTTC	5 cut(s)	15, 112, 147, 282, 363
HpyCH4III	ACNGT	4 cut(s)	253, 499, 505, 797
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	5 cut(s)	341, 383, 657, 672, 767
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	3 cut(s)	5, 235, 610
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	5 cut(s)	218, 308, 427, 720, 725
HspAI	GCGC	1 cut(s)	45
KpnI	GGTACC	1 cut(s)	788
Kzo9I	GATC	8 cut(s)	86, 143, 231, 325, 390, 595, 625, 750
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	3 cut(s)	187, 392, 681
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	4 cut(s)	499, 585, 692, 816
MalI	GATC	8 cut(s)	88, 145, 233, 327, 392, 597, 627, 752
MboI	GATC	8 cut(s)	86, 143, 231, 325, 390, 595, 625, 750
MboII	GAAGA	4 cut(s)	30, 267, 277, 560
MflI	RGATCY	4 cut(s)	143, 325, 625, 750
MlyI	GAGTC	3 cut(s)	18, 128, 602
Mph1103I	ATGCAT	1 cut(s)	385
MroXI	GAANNNNTTC	1 cut(s)	25
MseI	TTAA	1 cut(s)	621
MspI	CCGG	2 cut(s)	15, 394
MspR9I	CCNGG	3 cut(s)	210, 321, 489
MvaI	CCWGG	3 cut(s)	210, 321, 489
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	721
NdeII	GATC	8 cut(s)	86, 143, 231, 325, 390, 595, 625, 750
NlaIII	CATG	5 cut(s)	218, 308, 427, 720, 725
NlaIV	GGNNCC	5 cut(s)	327, 627, 752, 762, 786
NmuCI	GTSAC	2 cut(s)	585, 692
NsiI	ATGCAT	1 cut(s)	385
NspI	RCATGY	1 cut(s)	427
PdmI	GAANNNNTTC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	268
PflMI	CCANNNNNTGG	2 cut(s)	689, 722
PfoI	TCCNGGA	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	44, 259
PleI	GAGTC	3 cut(s)	17, 127, 602
PpsI	GAGTC	3 cut(s)	17, 127, 602
Psp6I	CCWGG	3 cut(s)	208, 319, 487
PspFI	CCCAGC	2 cut(s)	244, 329
PspGI	CCWGG	3 cut(s)	208, 319, 487
PspN4I	GGNNCC	5 cut(s)	327, 627, 752, 762, 786
PspPI	GGNCC	2 cut(s)	403, 761
PstNI	CAGNNNCTG	1 cut(s)	251
PsuI	RGATCY	4 cut(s)	143, 325, 625, 750
RsaI	GTAC	2 cut(s)	496, 786
RsaNI	GTAC	2 cut(s)	495, 785
SaqAI	TTAA	1 cut(s)	621
SatI	GCNGC	2 cut(s)	43, 258
Sau3AI	GATC	8 cut(s)	86, 143, 231, 325, 390, 595, 625, 750
Sau96I	GGNCC	2 cut(s)	403, 761
ScaI	AGTACT	1 cut(s)	496
SchI	GAGTC	3 cut(s)	18, 128, 602
ScrFI	CCNGG	3 cut(s)	210, 321, 489
SetI	ASST	9 cut(s)	56, 243, 250, 322, 367, 374, 468, 474, 786
SfaNI	GCATC	3 cut(s)	187, 392, 681
SfcI	CTRYAG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	403
SmlI	CTYRAG	3 cut(s)	407, 461, 779
SmoI	CTYRAG	3 cut(s)	407, 461, 779
SsiI	CCGC	3 cut(s)	42, 702, 754
StyD4I	CCNGG	3 cut(s)	208, 319, 487
StyI	CCWWGG	1 cut(s)	721
TaaI	ACNGT	4 cut(s)	253, 499, 505, 797
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	1 cut(s)	85
TaqII	GACCGA	1 cut(s)	821
TatI	WGTACW	1 cut(s)	494
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	2 cut(s)	585, 692
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	2 cut(s)	585, 692
TspDTI	ATGAA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	267
Van91I	CCANNNNNTGG	2 cut(s)	689, 722
VpaK11BI	GGWCC	1 cut(s)	403
XceI	RCATGY	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	25
ZraI	GACGTC	1 cut(s)	241
ZrmI	AGTACT	1 cut(s)	496
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.