Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009525.1

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Reverse (-)

11372 .. 11974

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009525.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgatctcagacgtcccagctactgtggcagcagtgaagaatccttcttcaaagattgtatatgatgactacaaccatgaaagatacccacctggtgatcccagcaagcgtgcatttgcttattttgtcttgacaggtggaaggtttgtgtatgcatccttgatccggcttctggtcctcaagtttgttttgagcatgtctgccagcaaagatgtccttgctcttgcttccattgaggtcgacctatccagcattgagcctggcagtactgttactgtcaagtggagggggaagccagtttttattaggcgtagaactgaagatgacatcaagttggctaatagtattgatgttcagtcacttcgcgatcctcaacaggactcagagagggttaaggatccagaatggcttattgttgttggtgtctgcactcacttggggtgcatccccttgccaaatgctggtgactttggcggatggttttgcccatgccatggttcacactatgacatttctggtaggatccgcaaggggcctgcaccctacaatcttgaggtacccacttacagttttttgaccgagaacaagttactcattgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0006091 GO:0006950 GO:0008121 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016679 GO:0016681 GO:0019866 GO:0022900 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046872 GO:0050896 GO:0055114 GO:0070069 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

200

Amino Acids

22.16

Weight (kDa)

7.67

Isoelectric Point (pI)

51.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	15
Acc65I	GGTACC	1 cut(s)	556
AccB1I	GGYRCC	1 cut(s)	556
AccB7I	CCANNNNNTGG	2 cut(s)	461, 494
AccI	GTMKAC	1 cut(s)	240
AccII	CGCG	1 cut(s)	366
AciI	CCGC	2 cut(s)	474, 526
AclWI	GGATC	7 cut(s)	92, 157, 362, 392, 405, 517, 530
AcuI	CTGAAG	1 cut(s)	339
AcyI	GRCGYC	1 cut(s)	12
AdeI	CACNNNGTG	1 cut(s)	95
AfaI	GTAC	2 cut(s)	268, 558
AfiI	CCNNNNNNNGG	4 cut(s)	165, 172, 461, 494
AgsI	TTSAA	1 cut(s)	51
AjnI	CCWGG	2 cut(s)	91, 259
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
AlwI	GGATC	7 cut(s)	92, 157, 362, 392, 405, 517, 530
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	1 cut(s)	533
ApeKI	GCWGC	1 cut(s)	29
Asp718I	GGTACC	1 cut(s)	556
AspS9I	GGNCC	2 cut(s)	175, 533
AsuHPI	GGTGA	2 cut(s)	107, 476
AvaII	GGWCC	1 cut(s)	175
BamHI	GGATCC	2 cut(s)	397, 522
BanI	GGYRCC	1 cut(s)	556
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	471
BciT130I	CCWGG	2 cut(s)	93, 261
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
BmcAI	AGTACT	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	93, 261
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	175, 533
BmiI	GGNNCC	4 cut(s)	399, 524, 534, 558
BmrFI	CCNGG	2 cut(s)	93, 261
BmsI	GCATC	2 cut(s)	164, 453
BpuEI	CTTGAG	2 cut(s)	164, 572
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	493
Bsc4I	CCNNNNNNNGG	4 cut(s)	165, 172, 461, 494
Bse1I	ACTGG	1 cut(s)	296
BseBI	CCWGG	2 cut(s)	93, 261
BseDI	CCNNGG	1 cut(s)	493
BseGI	GGATG	3 cut(s)	155, 444, 482
BseLI	CCNNNNNNNGG	4 cut(s)	165, 172, 461, 494
BseMII	CTCAG	2 cut(s)	21, 396
BseNI	ACTGG	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	41
BseYI	CCCAGC	2 cut(s)	16, 101
BsgI	GTGCAG	2 cut(s)	412, 522
Bsh1236I	CGCG	1 cut(s)	366
BshFI	GGCC	1 cut(s)	535
BshNI	GGYRCC	1 cut(s)	556
BsiSI	CCGG	1 cut(s)	166
BslI	CCNNNNNNNGG	4 cut(s)	165, 172, 461, 494
BsnI	GGCC	1 cut(s)	535
Bsp143I	GATC	6 cut(s)	3, 97, 162, 367, 397, 522
Bsp19I	CCATGG	1 cut(s)	493
Bsp68I	TCGCGA	1 cut(s)	366
BspACI	CCGC	2 cut(s)	474, 526
BspANI	GGCC	1 cut(s)	535
BspCNI	CTCAG	2 cut(s)	20, 395
BspFNI	CGCG	1 cut(s)	366
BspLI	GGNNCC	4 cut(s)	399, 524, 534, 558
BspPI	GGATC	7 cut(s)	92, 157, 362, 392, 405, 517, 530
BspT107I	GGYRCC	1 cut(s)	556
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	493
BssMI	GATC	6 cut(s)	3, 97, 162, 367, 397, 522
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	493
Bst2UI	CCWGG	2 cut(s)	93, 261
Bst4CI	ACNGT	4 cut(s)	25, 271, 277, 569
BstACI	GRCGYC	1 cut(s)	12
BstC8I	GCNNGC	4 cut(s)	107, 111, 205, 537
BstDEI	CTNAG	2 cut(s)	7, 382
BstDSI	CCRYGG	1 cut(s)	493
BstF5I	GGATG	3 cut(s)	155, 444, 482
BstFNI	CGCG	1 cut(s)	366
BstKTI	GATC	6 cut(s)	6, 100, 165, 370, 400, 525
BstMBI	GATC	6 cut(s)	3, 97, 162, 367, 397, 522
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	2 cut(s)	93, 261
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	2 cut(s)	91, 259
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	1 cut(s)	41
BstX2I	RGATCY	2 cut(s)	397, 522
BstYI	RGATCY	2 cut(s)	397, 522
BsuRI	GGCC	1 cut(s)	535
BtgI	CCRYGG	1 cut(s)	493
BtsCI	GGATG	3 cut(s)	155, 444, 482
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
BtuMI	TCGCGA	1 cut(s)	366
Cac8I	GCNNGC	4 cut(s)	107, 111, 205, 537
CaiI	CAGNNNCTG	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	175, 533
CsiI	ACCWGGT	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	267, 557
CviAII	CATG	4 cut(s)	77, 196, 489, 494
CviJI	RGCY	7 cut(s)	20, 169, 259, 295, 338, 409, 535
CviKI_1	RGCY	7 cut(s)	20, 169, 259, 295, 338, 409, 535
CviQI	GTAC	2 cut(s)	267, 557
DdeI	CTNAG	2 cut(s)	7, 382
DpnI	GATC	6 cut(s)	5, 99, 164, 369, 399, 524
DpnII	GATC	6 cut(s)	3, 97, 162, 367, 397, 522
DraIII	CACNNNGTG	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	489
Eco130I	CCWWGG	1 cut(s)	493
Eco47I	GGWCC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	533
EcoRII	CCWGG	2 cut(s)	91, 259
EcoT14I	CCWWGG	1 cut(s)	493
EcoT22I	ATGCAT	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	493
FaeI	CATG	4 cut(s)	80, 199, 492, 497
FaiI	YATR	8 cut(s)	61, 63, 78, 153, 197, 490, 495, 507
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FatI	CATG	4 cut(s)	76, 195, 488, 493
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	3 cut(s)	142, 431, 489
Fsp4HI	GCNGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	30
GsaI	CCCAGC	2 cut(s)	20, 105
HaeIII	GGCC	1 cut(s)	535
HapII	CCGG	1 cut(s)	166
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	4 cut(s)	80, 199, 492, 497
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	2 cut(s)	40, 380
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	2 cut(s)	107, 476
Hpy166II	GTNNAC	2 cut(s)	241, 500
Hpy188I	TCNGA	2 cut(s)	10, 385
Hpy188III	TCNNGA	4 cut(s)	130, 365, 401, 551
Hpy8I	GTNNAC	2 cut(s)	241, 500
HpyAV	CCTTC	2 cut(s)	54, 135
HpyCH4III	ACNGT	4 cut(s)	25, 271, 277, 569
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	5 cut(s)	113, 155, 429, 444, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	2 cut(s)	7, 382
HpySE526I	ACGT	1 cut(s)	12
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	4 cut(s)	80, 199, 492, 497
KpnI	GGTACC	1 cut(s)	560
Kzo9I	GATC	6 cut(s)	3, 97, 162, 367, 397, 522
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	2 cut(s)	164, 453
MabI	ACCWGGT	1 cut(s)	91
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	4 cut(s)	271, 357, 464, 588
MalI	GATC	6 cut(s)	5, 99, 164, 369, 399, 524
MboI	GATC	6 cut(s)	3, 97, 162, 367, 397, 522
MboII	GAAGA	3 cut(s)	39, 49, 332
MflI	RGATCY	2 cut(s)	397, 522
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	6 cut(s)	188, 229, 279, 381, 381, 547
Mph1103I	ATGCAT	1 cut(s)	157
MseI	TTAA	1 cut(s)	393
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	2 cut(s)	93, 261
MvaI	CCWGG	2 cut(s)	93, 261
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	493
NdeII	GATC	6 cut(s)	3, 97, 162, 367, 397, 522
NlaIII	CATG	4 cut(s)	80, 199, 492, 497
NlaIV	GGNNCC	4 cut(s)	399, 524, 534, 558
NmuCI	GTSAC	2 cut(s)	357, 464
NruI	TCGCGA	1 cut(s)	366
NsiI	ATGCAT	1 cut(s)	157
NspI	RCATGY	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	40
PflMI	CCANNNNNTGG	2 cut(s)	461, 494
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
Psp6I	CCWGG	2 cut(s)	91, 259
PspFI	CCCAGC	2 cut(s)	16, 101
PspGI	CCWGG	2 cut(s)	91, 259
PspN4I	GGNNCC	4 cut(s)	399, 524, 534, 558
PspPI	GGNCC	2 cut(s)	175, 533
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	2 cut(s)	397, 522
RruI	TCGCGA	1 cut(s)	366
RsaI	GTAC	2 cut(s)	268, 558
RsaNI	GTAC	2 cut(s)	267, 557
SalI	GTCGAC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	6 cut(s)	3, 97, 162, 367, 397, 522
Sau96I	GGNCC	2 cut(s)	175, 533
ScaI	AGTACT	1 cut(s)	268
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	2 cut(s)	93, 261
SetI	ASST	8 cut(s)	15, 22, 94, 139, 146, 240, 246, 558
SexAI	ACCWGGT	1 cut(s)	91
SfaNI	GCATC	2 cut(s)	164, 453
SinI	GGWCC	1 cut(s)	175
SmlI	CTYRAG	2 cut(s)	179, 551
SmoI	CTYRAG	2 cut(s)	179, 551
SsiI	CCGC	2 cut(s)	474, 526
StyD4I	CCNGG	2 cut(s)	91, 259
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	4 cut(s)	25, 271, 277, 569
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	240
TaqII	GACCGA	1 cut(s)	593
TatI	WGTACW	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	2 cut(s)	357, 464
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	2 cut(s)	357, 464
TspDTI	ATGAA	1 cut(s)	93
TspRI	CASTG	1 cut(s)	39
Van91I	CCANNNNNTGG	2 cut(s)	461, 494
VpaK11BI	GGWCC	1 cut(s)	175
XceI	RCATGY	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	240
ZraI	GACGTC	1 cut(s)	13
ZrmI	AGTACT	1 cut(s)	268
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.