Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Forward (+)

10889535 .. 10891953

Gene Structure 2419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1141300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGCCATCGTTTATGGGACGACGACGTTTTTGGCCGGCATATGTTCGGGTTGGACTTTGCTATGGTGGTCAAATAGCCCAAAAAAGGAAAAACAAAAAGAAGAAAGAGAAAAGCATTTGTGATTTGTTGGTGACGTCGAGACTCGAGAGGGCTGAGGCCATTGGTACCGAGCGATTGCAGAAGAAGAGGAAAATGCTGAGGGTCGCGGGAAGAAGGCTTTCATCTTCCGCCGCAGCGTGGCGGTCGTCGTCGCAGACCACCCCCGCCTTCGTCTCCGGCGGATCCCATCCGCTTTTCAGTACCAACAACAACAGCGACGACTCTTCCTCCGATTTCGCTTCCAGATCCCCTGCTCCCTTTTTCCTCAATTCCAAAATTCCATCTCTCATTAGAGGATTTTCCTCCGAAGCCCTCGCACCTGGAAATGATATTAGTTTTCTCTCAGACGTCCCAGCTACTGTGGCAGCTGTGAAGAATCCTTCTTCAAAAATTGTGTATGATGAGTACAACCATGAGAGGTATCCACCTGGTGACCCCAGCAAGCGTGCATTTGCTTATTTCGTCTTGACAGGAGGCAGATTTGTGTATGCCTCCTTGATCCGGCTTCTCATCCTCAAGTTTGTACTGAGCATGTCTGCCAGCAAAGATGTTCTTGCCCTTGCTTCCCTTGAGGTTGACCTGTCCAGCATTGAGCCTGGTACTACTGTCACTGTCAAGTGGAGAGGGAAGCCTGTTTTCATTAGGCGTAGAACGGAAGATGACATCAAGTTGGCTAACAGTGTAGATGTTCAGTCCCTTCGTGATCCCCAACAGGATGCAGAGAGGGTTACAGATCCAGAATGGCTTATTGTTGTCGGGGTCTGCACTCACTTAGGGTGCATCCCCTTGCCAAATGCTGGTGATTTTGGTGGTTGGTTCTGCCCATGCCATGGTTCGCACTACGACATTTCTGGCAGGATCCGCAAGGGGCCAGCACCATTCAATCTAGAGGTACCCACTTACAGTTTTTTGGCTGAGAACAAGCTACTGATCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0006091 GO:0006950 GO:0008121 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016679 GO:0016681 GO:0019866 GO:0022900 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046872 GO:0050896 GO:0055114 GO:0070069 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

346

Amino Acids

38.09

Weight (kDa)

9.69

Isoelectric Point (pI)

57.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_TM	PF02921	178 - 216	4.8e-08	Ubiquinol cytochrome reductase transmembrane region
Rieske	PF00355	230 - 329	3.9e-08	Rieske [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	137, 450
Acc65I	GGTACC	2 cut(s)	164, 991
AccB1I	GGYRCC	2 cut(s)	164, 991
AccB7I	CCANNNNNTGG	2 cut(s)	896, 929
AccII	CGCG	1 cut(s)	206
AciI	CCGC	8 cut(s)	206, 228, 231, 241, 264, 279, 290, 961
AclWI	GGATC	8 cut(s)	276, 289, 339, 592, 797, 827, 952, 965
AcoI	YGGCCR	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	375
AcyI	GRCGYC	2 cut(s)	134, 447
AdeI	CACNNNGTG	1 cut(s)	530
AfaI	GTAC	6 cut(s)	166, 301, 506, 624, 700, 993
AfiI	CCNNNNNNNGG	5 cut(s)	84, 237, 600, 896, 929
AgsI	TTSAA	2 cut(s)	486, 982
AjnI	CCWGG	3 cut(s)	418, 526, 694
AluBI	AGCT	3 cut(s)	455, 467, 1024
AluI	AGCT	3 cut(s)	455, 467, 1024
Alw26I	GTCTC	2 cut(s)	133, 277
AlwI	GGATC	8 cut(s)	276, 289, 339, 592, 797, 827, 952, 965
AlwNI	CAGNNNCTG	1 cut(s)	458
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	3 cut(s)	32, 156, 968
ApeKI	GCWGC	2 cut(s)	233, 464
ApoI	RAATTY	1 cut(s)	375
ArsI	GACNNNNNNTTYG	2 cut(s)	12, 44
Asp700I	GAANNNNTTC	1 cut(s)	217
Asp718I	GGTACC	2 cut(s)	164, 991
AspS9I	GGNCC	1 cut(s)	968
AsuHPI	GGTGA	3 cut(s)	142, 542, 911
AvaI	CYCGRG	1 cut(s)	143
BaeI	ACNNNNGTAYC	2 cut(s)	690, 723
BamHI	GGATCC	2 cut(s)	281, 957
BanI	GGYRCC	2 cut(s)	164, 991
BbvCI	CCTCAGC	2 cut(s)	153, 197
BbvI	GCAGC	2 cut(s)	245, 476
BccI	CCATC	3 cut(s)	13, 294, 388
BciT130I	CCWGG	3 cut(s)	420, 528, 696
BciVI	GTATCC	1 cut(s)	531
BcoDI	GTCTC	2 cut(s)	133, 277
BfaI	CTAG	1 cut(s)	986
BfuI	GTATCC	1 cut(s)	531
BisI	GCNGC	3 cut(s)	231, 234, 465
BlsI	GCNGC	3 cut(s)	232, 235, 466
Bme1390I	CCNGG	3 cut(s)	420, 528, 696
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	968
BmiI	GGNNCC	5 cut(s)	166, 283, 959, 969, 993
BmrFI	CCNGG	3 cut(s)	420, 528, 696
BmsI	GCATC	2 cut(s)	805, 888
Bpu10I	CCTNAGC	2 cut(s)	153, 197
BpuEI	CTTGAG	2 cut(s)	599, 689
BsaHI	GRCGYC	2 cut(s)	134, 447
BsaJI	CCNNGG	1 cut(s)	928
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	5 cut(s)	84, 237, 600, 896, 929
Bse118I	RCCGGY	1 cut(s)	34
BseBI	CCWGG	3 cut(s)	420, 528, 696
BseDI	CCNNGG	1 cut(s)	928
BseGI	GGATG	4 cut(s)	286, 609, 820, 879
BseLI	CCNNNNNNNGG	5 cut(s)	84, 237, 600, 896, 929
BseMII	CTCAG	5 cut(s)	144, 188, 456, 617, 1005
BseXI	GCAGC	2 cut(s)	245, 476
BseYI	CCCAGC	2 cut(s)	451, 536
BsgI	GTGCAG	1 cut(s)	847
Bsh1236I	CGCG	1 cut(s)	206
Bsh1285I	CGRYCG	1 cut(s)	245
BshFI	GGCC	3 cut(s)	34, 158, 970
BshNI	GGYRCC	2 cut(s)	164, 991
BsiEI	CGRYCG	1 cut(s)	245
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	3 cut(s)	35, 276, 601
BslFI	GGGAC	3 cut(s)	30, 434, 778
BslI	CCNNNNNNNGG	5 cut(s)	84, 237, 600, 896, 929
BsmAI	GTCTC	2 cut(s)	133, 277
BsmBI	CGTCTC	1 cut(s)	277
BsmFI	GGGAC	3 cut(s)	30, 434, 778
BsnI	GGCC	3 cut(s)	34, 158, 970
BsoBI	CYCGRG	1 cut(s)	143
Bsp143I	GATC	7 cut(s)	281, 344, 597, 802, 832, 957, 1029
Bsp19I	CCATGG	1 cut(s)	928
BspACI	CCGC	8 cut(s)	206, 228, 231, 241, 264, 279, 290, 961
BspANI	GGCC	3 cut(s)	34, 158, 970
BspCNI	CTCAG	5 cut(s)	145, 189, 455, 618, 1006
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	5 cut(s)	166, 283, 959, 969, 993
BspPI	GGATC	8 cut(s)	276, 289, 339, 592, 797, 827, 952, 965
BspT107I	GGYRCC	2 cut(s)	164, 991
BsrFI	RCCGGY	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	928
BssMI	GATC	7 cut(s)	281, 344, 597, 802, 832, 957, 1029
BssNI	GRCGYC	2 cut(s)	134, 447
BssT1I	CCWWGG	1 cut(s)	928
Bst2UI	CCWGG	3 cut(s)	420, 528, 696
Bst4CI	ACNGT	5 cut(s)	460, 706, 712, 779, 1004
Bst6I	CTCTTC	2 cut(s)	179, 328
BstACI	GRCGYC	2 cut(s)	134, 447
BstC8I	GCNNGC	5 cut(s)	36, 542, 546, 640, 972
BstDEI	CTNAG	6 cut(s)	153, 197, 442, 626, 871, 1014
BstDSI	CCRYGG	1 cut(s)	928
BstEII	GGTNACC	1 cut(s)	530
BstF5I	GGATG	4 cut(s)	286, 609, 820, 879
BstFNI	CGCG	1 cut(s)	206
BstKTI	GATC	7 cut(s)	284, 347, 600, 805, 835, 960, 1032
BstMAI	GTCTC	2 cut(s)	133, 277
BstMBI	GATC	7 cut(s)	281, 344, 597, 802, 832, 957, 1029
BstMCI	CGRYCG	1 cut(s)	245
BstMWI	GCNNNNNNNGC	2 cut(s)	461, 960
BstNI	CCWGG	3 cut(s)	420, 528, 696
BstNSI	RCATGY	1 cut(s)	634
BstPI	GGTNACC	1 cut(s)	530
BstSCI	CCNGG	3 cut(s)	418, 526, 694
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	2 cut(s)	245, 476
BstX2I	RGATCY	4 cut(s)	281, 344, 832, 957
BstYI	RGATCY	4 cut(s)	281, 344, 832, 957
BsuI	GTATCC	1 cut(s)	531
BsuRI	GGCC	3 cut(s)	34, 158, 970
BtgI	CCRYGG	1 cut(s)	928
BtsCI	GGATG	4 cut(s)	286, 609, 820, 879
BtsIMutI	CAGTG	2 cut(s)	708, 784
Cac8I	GCNNGC	5 cut(s)	36, 542, 546, 640, 972
CaiI	CAGNNNCTG	1 cut(s)	458
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	968
CsiI	ACCWGGT	1 cut(s)	526
Csp6I	GTAC	6 cut(s)	165, 300, 505, 623, 699, 992
CviAII	CATG	4 cut(s)	512, 631, 924, 929
CviQI	GTAC	6 cut(s)	165, 300, 505, 623, 699, 992
DdeI	CTNAG	6 cut(s)	153, 197, 442, 626, 871, 1014
DpnI	GATC	7 cut(s)	283, 346, 599, 804, 834, 959, 1031
DpnII	GATC	7 cut(s)	281, 344, 597, 802, 832, 957, 1029
DraIII	CACNNNGTG	1 cut(s)	530
EaeI	YGGCCR	1 cut(s)	32
Eam1104I	CTCTTC	2 cut(s)	179, 328
EarI	CTCTTC	2 cut(s)	179, 328
EciI	GGCGGA	2 cut(s)	217, 294
Eco130I	CCWWGG	1 cut(s)	928
Eco88I	CYCGRG	1 cut(s)	143
Eco91I	GGTNACC	1 cut(s)	530
EcoO65I	GGTNACC	1 cut(s)	530
EcoRII	CCWGG	3 cut(s)	418, 526, 694
EcoT14I	CCWWGG	1 cut(s)	928
ErhI	CCWWGG	1 cut(s)	928
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	4 cut(s)	515, 634, 927, 932
FalI	AAGNNNNNCTT	2 cut(s)	636, 668
FaqI	GGGAC	3 cut(s)	30, 434, 778
FatI	CATG	4 cut(s)	511, 630, 923, 928
FauI	CCCGC	2 cut(s)	199, 271
FauNDI	CATATG	1 cut(s)	40
Fnu4HI	GCNGC	3 cut(s)	231, 234, 465
FokI	GGATG	4 cut(s)	273, 596, 827, 866
Fsp4HI	GCNGC	3 cut(s)	231, 234, 465
FspBI	CTAG	1 cut(s)	986
GluI	GCNGC	3 cut(s)	231, 234, 465
GsaI	CCCAGC	2 cut(s)	455, 540
HaeIII	GGCC	3 cut(s)	34, 158, 970
HapII	CCGG	3 cut(s)	35, 276, 601
Hin1I	GRCGYC	2 cut(s)	134, 447
Hin1II	CATG	4 cut(s)	515, 634, 927, 932
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HinfI	GANTC	3 cut(s)	141, 320, 475
HpaII	CCGG	3 cut(s)	35, 276, 601
HphI	GGTGA	3 cut(s)	142, 542, 911
Hpy166II	GTNNAC	1 cut(s)	676
Hpy188I	TCNGA	4 cut(s)	331, 406, 445, 1034
Hpy188III	TCNNGA	7 cut(s)	138, 145, 342, 565, 800, 836, 986
Hpy8I	GTNNAC	1 cut(s)	676
Hpy99I	CGWCG	6 cut(s)	24, 27, 139, 250, 253, 320
HpyAV	CCTTC	4 cut(s)	207, 277, 489, 806
HpyCH4III	ACNGT	5 cut(s)	460, 706, 712, 779, 1004
HpyCH4IV	ACGT	3 cut(s)	25, 134, 447
HpyCH4V	TGCA	5 cut(s)	178, 548, 818, 864, 879
HpyF10VI	GCNNNNNNNGC	2 cut(s)	461, 960
HpyF3I	CTNAG	6 cut(s)	153, 197, 442, 626, 871, 1014
HpySE526I	ACGT	3 cut(s)	25, 134, 447
Hsp92I	GRCGYC	2 cut(s)	134, 447
Hsp92II	CATG	4 cut(s)	515, 634, 927, 932
KpnI	GGTACC	2 cut(s)	168, 995
KroI	GCCGGC	1 cut(s)	34
KroNI	GCCGGC	1 cut(s)	36
Kzo9I	GATC	7 cut(s)	281, 344, 597, 802, 832, 957, 1029
LmnI	GCTCC	1 cut(s)	358
Lsp1109I	GCAGC	2 cut(s)	245, 476
LweI	GCATC	2 cut(s)	805, 888
MabI	ACCWGGT	1 cut(s)	526
MaeI	CTAG	1 cut(s)	986
MaeII	ACGT	3 cut(s)	25, 134, 447
MaeIII	GTNAC	4 cut(s)	130, 530, 706, 826
MalI	GATC	7 cut(s)	283, 346, 599, 804, 834, 959, 1031
MboI	GATC	7 cut(s)	281, 344, 597, 802, 832, 957, 1029
MboII	GAAGA	9 cut(s)	112, 193, 196, 216, 222, 315, 474, 484, 767
MflI	RGATCY	4 cut(s)	281, 344, 832, 957
MluCI	AATT	3 cut(s)	367, 375, 489
MlyI	GAGTC	2 cut(s)	135, 314
MmeI	TCCRAC	1 cut(s)	31
MroNI	GCCGGC	1 cut(s)	34
MroXI	GAANNNNTTC	1 cut(s)	217
MspA1I	CMGCKG	1 cut(s)	467
MspI	CCGG	3 cut(s)	35, 276, 601
MspR9I	CCNGG	3 cut(s)	420, 528, 696
MvaI	CCWGG	3 cut(s)	420, 528, 696
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	2 cut(s)	461, 960
NaeI	GCCGGC	1 cut(s)	36
NcoI	CCATGG	1 cut(s)	928
NdeI	CATATG	1 cut(s)	40
NdeII	GATC	7 cut(s)	281, 344, 597, 802, 832, 957, 1029
NgoMIV	GCCGGC	1 cut(s)	34
NlaIII	CATG	4 cut(s)	515, 634, 927, 932
NlaIV	GGNNCC	5 cut(s)	166, 283, 959, 969, 993
NmuCI	GTSAC	3 cut(s)	130, 530, 706
NspI	RCATGY	1 cut(s)	634
PaeR7I	CTCGAG	1 cut(s)	143
PdiI	GCCGGC	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	475
PflMI	CCANNNNNTGG	2 cut(s)	896, 929
PkrI	GCNGC	3 cut(s)	232, 235, 466
PleI	GAGTC	2 cut(s)	135, 314
PpsI	GAGTC	2 cut(s)	135, 314
Psp6I	CCWGG	3 cut(s)	418, 526, 694
PspEI	GGTNACC	1 cut(s)	530
PspFI	CCCAGC	2 cut(s)	451, 536
PspGI	CCWGG	3 cut(s)	418, 526, 694
PspN4I	GGNNCC	5 cut(s)	166, 283, 959, 969, 993
PspPI	GGNCC	1 cut(s)	968
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	4 cut(s)	281, 344, 832, 957
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	6 cut(s)	166, 301, 506, 624, 700, 993
RsaNI	GTAC	6 cut(s)	165, 300, 505, 623, 699, 992
SatI	GCNGC	3 cut(s)	231, 234, 465
Sau3AI	GATC	7 cut(s)	281, 344, 597, 802, 832, 957, 1029
Sau96I	GGNCC	1 cut(s)	968
SchI	GAGTC	2 cut(s)	135, 314
ScrFI	CCNGG	3 cut(s)	420, 528, 696
SexAI	ACCWGGT	1 cut(s)	526
SfaNI	GCATC	2 cut(s)	805, 888
Sfr274I	CTCGAG	1 cut(s)	143
SlaI	CTCGAG	1 cut(s)	143
SmlI	CTYRAG	3 cut(s)	143, 614, 668
SmoI	CTYRAG	3 cut(s)	143, 614, 668
Sse9I	AATT	3 cut(s)	367, 375, 489
SsiI	CCGC	8 cut(s)	206, 228, 231, 241, 264, 279, 290, 961
SspMI	CTAG	1 cut(s)	986
StyD4I	CCNGG	3 cut(s)	418, 526, 694
StyI	CCWWGG	1 cut(s)	928
TaaI	ACNGT	5 cut(s)	460, 706, 712, 779, 1004
TaiI	ACGT	3 cut(s)	28, 137, 450
TaqI	TCGA	2 cut(s)	137, 144
TasI	AATT	3 cut(s)	367, 375, 489
TatI	WGTACW	2 cut(s)	504, 622
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	475
TscAI	CASTG	2 cut(s)	715, 784
TseFI	GTSAC	3 cut(s)	130, 530, 706
TseI	GCWGC	2 cut(s)	233, 464
Tsp45I	GTSAC	3 cut(s)	130, 530, 706
TspDTI	ATGAA	2 cut(s)	210, 727
TspGWI	ACGGA	1 cut(s)	767
TspRI	CASTG	2 cut(s)	715, 784
Van91I	CCANNNNNTGG	2 cut(s)	896, 929
XapI	RAATTY	1 cut(s)	375
XbaI	TCTAGA	1 cut(s)	985
XceI	RCATGY	1 cut(s)	634
XhoI	CTCGAG	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	217
XspI	CTAG	1 cut(s)	986
ZraI	GACGTC	2 cut(s)	135, 448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.