Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Forward (+)

7861460 .. 7863395

Gene Structure 1936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g11440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCTGAGAGTCGCGGGAAGAAGGCTGTCATCTTCTGCTGCGGCGTGGCGGTCGTCGTCGCAGACCGCCCCCGCCTTTGCCTCCAGCGGATCTCATCCGCTTTTCATTACCAACAACAGTAACGACGACTCTTCCTCCGGTTTCGCTTCCAGATCCCCCGCTCCCTTTTTCCTCAATTCCAAAATTCCATCTCTCGTCAGAGGATTTTCCTCTGAAGCCCTCGCTCCCGGAAATGATGTTGGTATTTTCTCAGACGTCCCAGCTACTGTGGCAGCTCTGAAGAATCCTTCTTCAAAAATTGTGTACGATGAGTACAACCATGAAAGGTATCCACCTGGTGACCCCAGCAAGCGTGCATTTGCTTATTTCATCTTGACAGGAGGCAGATTCGTGTATGCCTCCTTGATCCGGCTTCTCGTCCTCAAGTTTGTACTGAGCATGTCTGCCAGCAAAGATGTTCTTGCCCTTGCTTCCCTTGAGGTTGACCTGTCCAGCATTGAGCCTGGTACTACTGTTACTGTGAAGTGGAGAGGGAAGCCTGTTTTCATTAGGCGTAGAACTGAAGATGACATCAAGTTGGCTAACAGTGTAGATGTTCAGTCCCTTCGTGATCCCCAACAGGATGCAGAGAGGGTTACAAATCCAGAATGGCTTATTGTTGTCGGAGTCTGCACTCACTTAGGGTGCATCCCCTTGCCAAATGCTGGTGATTTTGGTGGTTGGTTCTGCCCATGCCATGGTTCGCACTACGACATTTCTGGCACGATCCGCAAGGGGCCTGCACCATTCAATCTAGAGGTACCCACTTACAGTTTTTTGGCCGAGAACAAGCTACTAATCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0006091 GO:0006950 GO:0008121 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016679 GO:0016681 GO:0019866 GO:0022900 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046872 GO:0050896 GO:0055114 GO:0070069 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

282

Amino Acids

30.41

Weight (kDa)

8.66

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
Acc65I	GGTACC	1 cut(s)	799
AccB1I	GGYRCC	1 cut(s)	799
AccB7I	CCANNNNNTGG	2 cut(s)	704, 737
AccBSI	CCGCTC	1 cut(s)	161
AccII	CGCG	1 cut(s)	14
AciI	CCGC	9 cut(s)	14, 41, 49, 66, 72, 87, 98, 159, 769
AclWI	GGATC	5 cut(s)	97, 147, 400, 605, 760
AcoI	YGGCCR	1 cut(s)	819
AcsI	RAATTY	1 cut(s)	183
AcuI	CTGAAG	3 cut(s)	234, 299, 582
AcyI	GRCGYC	1 cut(s)	255
AdeI	CACNNNGTG	1 cut(s)	338
AfaI	GTAC	5 cut(s)	305, 314, 432, 508, 801
AfiI	CCNNNNNNNGG	3 cut(s)	408, 704, 737
AgsI	TTSAA	2 cut(s)	294, 790
AjnI	CCWGG	2 cut(s)	334, 502
AluBI	AGCT	3 cut(s)	263, 275, 832
AluI	AGCT	3 cut(s)	263, 275, 832
AlwI	GGATC	5 cut(s)	97, 147, 400, 605, 760
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	2 cut(s)	776, 819
ApeKI	GCWGC	2 cut(s)	38, 272
ApoI	RAATTY	1 cut(s)	183
Asp718I	GGTACC	1 cut(s)	799
AspS9I	GGNCC	1 cut(s)	776
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	2 cut(s)	350, 719
BaeI	ACNNNNGTAYC	2 cut(s)	498, 531
BanI	GGYRCC	1 cut(s)	799
BbvI	GCAGC	2 cut(s)	25, 284
BccI	CCATC	1 cut(s)	196
BciT130I	CCWGG	2 cut(s)	336, 504
BciVI	GTATCC	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	228
BfaI	CTAG	1 cut(s)	794
BfuI	GTATCC	1 cut(s)	339
BisI	GCNGC	3 cut(s)	39, 42, 273
BlsI	GCNGC	3 cut(s)	40, 43, 274
Bme1390I	CCNGG	3 cut(s)	228, 336, 504
BmgT120I	GGNCC	1 cut(s)	776
BmiI	GGNNCC	2 cut(s)	777, 801
BmrFI	CCNGG	3 cut(s)	228, 336, 504
BmsI	GCATC	2 cut(s)	613, 696
BpmI	CTGGAG	1 cut(s)	67
BpuEI	CTTGAG	2 cut(s)	407, 497
BpuMI	CCSGG	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	736
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	3 cut(s)	408, 704, 737
BseBI	CCWGG	2 cut(s)	336, 504
BseDI	CCNNGG	1 cut(s)	736
BseGI	GGATG	3 cut(s)	94, 628, 687
BseLI	CCNNNNNNNGG	3 cut(s)	408, 704, 737
BseMII	CTCAG	2 cut(s)	264, 425
BseXI	GCAGC	2 cut(s)	25, 284
BseYI	CCCAGC	2 cut(s)	259, 344
BsgI	GTGCAG	2 cut(s)	655, 765
Bsh1236I	CGCG	1 cut(s)	14
Bsh1285I	CGRYCG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	778, 821
BshNI	GGYRCC	1 cut(s)	799
BsiEI	CGRYCG	1 cut(s)	53
BsiSI	CCGG	3 cut(s)	138, 228, 409
BslFI	GGGAC	2 cut(s)	242, 586
BslI	CCNNNNNNNGG	3 cut(s)	408, 704, 737
BsmFI	GGGAC	2 cut(s)	242, 586
BsnI	GGCC	2 cut(s)	778, 821
Bsp143I	GATC	5 cut(s)	89, 152, 405, 610, 765
Bsp19I	CCATGG	1 cut(s)	736
BspACI	CCGC	9 cut(s)	14, 41, 49, 66, 72, 87, 98, 159, 769
BspANI	GGCC	2 cut(s)	778, 821
BspCNI	CTCAG	2 cut(s)	263, 426
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	2 cut(s)	777, 801
BspPI	GGATC	5 cut(s)	97, 147, 400, 605, 760
BspT107I	GGYRCC	1 cut(s)	799
BsrBI	CCGCTC	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	736
BssMI	GATC	5 cut(s)	89, 152, 405, 610, 765
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	736
Bst2UI	CCWGG	2 cut(s)	336, 504
Bst4CI	ACNGT	6 cut(s)	119, 268, 514, 520, 587, 812
Bst6I	CTCTTC	1 cut(s)	136
BstACI	GRCGYC	1 cut(s)	255
BstC8I	GCNNGC	4 cut(s)	350, 354, 448, 780
BstDEI	CTNAG	4 cut(s)	5, 250, 434, 679
BstDSI	CCRYGG	1 cut(s)	736
BstEII	GGTNACC	1 cut(s)	338
BstF5I	GGATG	3 cut(s)	94, 628, 687
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	5 cut(s)	92, 155, 408, 613, 768
BstMBI	GATC	5 cut(s)	89, 152, 405, 610, 765
BstMCI	CGRYCG	1 cut(s)	53
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 768
BstNI	CCWGG	2 cut(s)	336, 504
BstNSI	RCATGY	1 cut(s)	442
BstPI	GGTNACC	1 cut(s)	338
BstSCI	CCNGG	3 cut(s)	226, 334, 502
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	25, 284
BstX2I	RGATCY	2 cut(s)	89, 152
BstYI	RGATCY	2 cut(s)	89, 152
BsuI	GTATCC	1 cut(s)	339
BsuRI	GGCC	2 cut(s)	778, 821
BtgI	CCRYGG	1 cut(s)	736
BtsCI	GGATG	3 cut(s)	94, 628, 687
BtsIMutI	CAGTG	1 cut(s)	592
Cac8I	GCNNGC	4 cut(s)	350, 354, 448, 780
CaiI	CAGNNNCTG	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	776
CsiI	ACCWGGT	1 cut(s)	334
Csp6I	GTAC	5 cut(s)	304, 313, 431, 507, 800
CviAII	CATG	4 cut(s)	320, 439, 732, 737
CviQI	GTAC	5 cut(s)	304, 313, 431, 507, 800
DdeI	CTNAG	4 cut(s)	5, 250, 434, 679
DpnI	GATC	5 cut(s)	91, 154, 407, 612, 767
DpnII	GATC	5 cut(s)	89, 152, 405, 610, 765
DraIII	CACNNNGTG	1 cut(s)	338
EaeI	YGGCCR	1 cut(s)	819
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	736
Eco57I	CTGAAG	3 cut(s)	234, 299, 582
Eco91I	GGTNACC	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	776
EcoO65I	GGTNACC	1 cut(s)	338
EcoRII	CCWGG	2 cut(s)	334, 502
EcoT14I	CCWWGG	1 cut(s)	736
ErhI	CCWWGG	1 cut(s)	736
FaeI	CATG	4 cut(s)	323, 442, 735, 740
FaiI	YATR	5 cut(s)	321, 396, 440, 733, 738
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FaqI	GGGAC	2 cut(s)	242, 586
FatI	CATG	4 cut(s)	319, 438, 731, 736
FauI	CCCGC	3 cut(s)	7, 79, 166
Fnu4HI	GCNGC	3 cut(s)	39, 42, 273
FokI	GGATG	3 cut(s)	81, 635, 674
Fsp4HI	GCNGC	3 cut(s)	39, 42, 273
FspBI	CTAG	1 cut(s)	794
GluI	GCNGC	3 cut(s)	39, 42, 273
GsaI	CCCAGC	2 cut(s)	263, 348
GsuI	CTGGAG	1 cut(s)	67
HaeIII	GGCC	2 cut(s)	778, 821
HapII	CCGG	3 cut(s)	138, 228, 409
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	4 cut(s)	323, 442, 735, 740
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	5 cut(s)	9, 128, 283, 387, 666
HpaII	CCGG	3 cut(s)	138, 228, 409
HphI	GGTGA	2 cut(s)	350, 719
Hpy166II	GTNNAC	2 cut(s)	304, 484
Hpy188I	TCNGA	6 cut(s)	200, 214, 253, 279, 665, 842
Hpy188III	TCNNGA	5 cut(s)	150, 373, 608, 644, 794
Hpy8I	GTNNAC	2 cut(s)	304, 484
Hpy99I	CGWCG	3 cut(s)	58, 61, 128
HpyAV	CCTTC	3 cut(s)	15, 297, 614
HpyCH4III	ACNGT	6 cut(s)	119, 268, 514, 520, 587, 812
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	5 cut(s)	356, 626, 672, 687, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 768
HpyF3I	CTNAG	4 cut(s)	5, 250, 434, 679
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	4 cut(s)	323, 442, 735, 740
KpnI	GGTACC	1 cut(s)	803
Kzo9I	GATC	5 cut(s)	89, 152, 405, 610, 765
LmnI	GCTCC	2 cut(s)	166, 229
Lsp1109I	GCAGC	2 cut(s)	25, 284
LweI	GCATC	2 cut(s)	613, 696
MabI	ACCWGGT	1 cut(s)	334
MaeI	CTAG	1 cut(s)	794
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	4 cut(s)	119, 338, 514, 634
MalI	GATC	5 cut(s)	91, 154, 407, 612, 767
MbiI	CCGCTC	1 cut(s)	161
MboI	GATC	5 cut(s)	89, 152, 405, 610, 765
MboII	GAAGA	6 cut(s)	24, 30, 123, 282, 292, 575
MflI	RGATCY	2 cut(s)	89, 152
MluCI	AATT	3 cut(s)	175, 183, 297
MlyI	GAGTC	3 cut(s)	18, 122, 675
MmeI	TCCRAC	1 cut(s)	643
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	3 cut(s)	138, 228, 409
MspR9I	CCNGG	3 cut(s)	228, 336, 504
MvaI	CCWGG	2 cut(s)	336, 504
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	269, 768
NciI	CCSGG	1 cut(s)	228
NcoI	CCATGG	1 cut(s)	736
NdeII	GATC	5 cut(s)	89, 152, 405, 610, 765
NlaIII	CATG	4 cut(s)	323, 442, 735, 740
NlaIV	GGNNCC	2 cut(s)	777, 801
NmuCI	GTSAC	1 cut(s)	338
NspI	RCATGY	1 cut(s)	442
PfeI	GAWTC	2 cut(s)	283, 387
PflMI	CCANNNNNTGG	2 cut(s)	704, 737
PfoI	TCCNGGA	1 cut(s)	226
PkrI	GCNGC	3 cut(s)	40, 43, 274
PleI	GAGTC	3 cut(s)	17, 122, 674
PpsI	GAGTC	3 cut(s)	17, 122, 674
Psp6I	CCWGG	2 cut(s)	334, 502
PspEI	GGTNACC	1 cut(s)	338
PspFI	CCCAGC	2 cut(s)	259, 344
PspGI	CCWGG	2 cut(s)	334, 502
PspN4I	GGNNCC	2 cut(s)	777, 801
PspPI	GGNCC	1 cut(s)	776
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	2 cut(s)	89, 152
RsaI	GTAC	5 cut(s)	305, 314, 432, 508, 801
RsaNI	GTAC	5 cut(s)	304, 313, 431, 507, 800
SatI	GCNGC	3 cut(s)	39, 42, 273
Sau3AI	GATC	5 cut(s)	89, 152, 405, 610, 765
Sau96I	GGNCC	1 cut(s)	776
SchI	GAGTC	3 cut(s)	18, 122, 675
ScrFI	CCNGG	3 cut(s)	228, 336, 504
SetI	ASST	9 cut(s)	258, 265, 277, 329, 337, 483, 489, 801, 834
SexAI	ACCWGGT	1 cut(s)	334
SfaNI	GCATC	2 cut(s)	613, 696
SmlI	CTYRAG	2 cut(s)	422, 476
SmoI	CTYRAG	2 cut(s)	422, 476
Sse9I	AATT	3 cut(s)	175, 183, 297
SsiI	CCGC	9 cut(s)	14, 41, 49, 66, 72, 87, 98, 159, 769
SspMI	CTAG	1 cut(s)	794
StyD4I	CCNGG	3 cut(s)	226, 334, 502
StyI	CCWWGG	1 cut(s)	736
TaaI	ACNGT	6 cut(s)	119, 268, 514, 520, 587, 812
TaiI	ACGT	1 cut(s)	258
TasI	AATT	3 cut(s)	175, 183, 297
TatI	WGTACW	2 cut(s)	312, 430
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	2 cut(s)	283, 387
TscAI	CASTG	1 cut(s)	592
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	2 cut(s)	38, 272
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	4 cut(s)	94, 336, 358, 535
TspRI	CASTG	1 cut(s)	592
Van91I	CCANNNNNTGG	2 cut(s)	704, 737
XapI	RAATTY	1 cut(s)	183
XbaI	TCTAGA	1 cut(s)	793
XceI	RCATGY	1 cut(s)	442
XspI	CTAG	1 cut(s)	794
ZraI	GACGTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.