Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Reverse (-)

32476133 .. 32476753

Gene Structure 621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1261000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCTGAGAGTCGCGGGAAGAAGGCTGTCATCTTCTGCTGTGGGATGGCGGTTGTCGTCGCAGACCGCCACTGCCTTTGTCTCCGGAGGATCTCATCCACTTTTCATTACCAACAACAGTGACGACGACTCTTCCTCCGATTTCGCTTCCAAATCCCCCGCTTCATTTTTCCTCAATTCCAAAATTCCATCTCTCGTTAGAGGATTTTCCTCTGAAGCCCTCGCTCCCGGAAATGATATCGGTATTTTCTCAGACGTCCCAACTACTATGTCAGCTATGAAGAATCCTTCTTCAAAAATTATGTACGATGAGTACAACCATGAAAGGTATCCACTTGGTGACCTCAGCAAGCGTGCATTTGCTTTTTTCATCTTGACAGGAGGCAGATTCGTGTATGCCTCCTTGATTCGGCTTCTCATCCTCAAGTTTGTACTGAGCATGTCTGCTAGTAAAGATGTTTTTGCCCTTGCTTCCCTTGAGGTTCACCTGTCCAACATTGAGCCTGGTACTACTGTTACTGTGAAGTGGAGAGGGAAGCCTGTTTTCATTAGGCGTAGAACTGAATATGACATCAAGTTAGCTAACAGTGTAGACATTCAGTCCCTTCGTGATCCCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0006091 GO:0006950 GO:0008121 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016679 GO:0016681 GO:0019866 GO:0022900 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046872 GO:0050896 GO:0055114 GO:0070069 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

207

Amino Acids

22.67

Weight (kDa)

9.69

Isoelectric Point (pI)

51.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_TM	PF02921	115 - 152	4.4e-06	Ubiquinol cytochrome reductase transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
AccI	GTMKAC	1 cut(s)	591
AccII	CGCG	1 cut(s)	14
AccIII	TCCGGA	1 cut(s)	83
AciI	CCGC	4 cut(s)	14, 49, 66, 159
AclWI	GGATC	2 cut(s)	97, 605
AcsI	RAATTY	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	234
AcyI	GRCGYC	1 cut(s)	255
AdeI	CACNNNGTG	1 cut(s)	338
AfaI	GTAC	4 cut(s)	305, 314, 432, 508
AfiI	CCNNNNNNNGG	1 cut(s)	408
AgsI	TTSAA	1 cut(s)	294
AhdI	GACNNNNNGTC	1 cut(s)	598
AjnI	CCWGG	1 cut(s)	502
AluBI	AGCT	2 cut(s)	275, 581
AluI	AGCT	2 cut(s)	275, 581
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	2 cut(s)	97, 605
Aor13HI	TCCGGA	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	183
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	2 cut(s)	350, 476
BaeI	ACNNNNGTAYC	2 cut(s)	498, 531
BbvCI	CCTCAGC	1 cut(s)	344
BccI	CCATC	2 cut(s)	39, 196
BciT130I	CCWGG	1 cut(s)	504
BciVI	GTATCC	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	447
BfuI	GTATCC	1 cut(s)	339
Bme1390I	CCNGG	2 cut(s)	228, 504
BmeRI	GACNNNNNGTC	1 cut(s)	598
BmrFI	CCNGG	2 cut(s)	228, 504
Bpu10I	CCTNAGC	1 cut(s)	344
BpuEI	CTTGAG	2 cut(s)	407, 497
BpuMI	CCSGG	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	255
BsaWI	WCCGGW	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
BseAI	TCCGGA	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	504
BseGI	GGATG	3 cut(s)	50, 94, 417
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMII	CTCAG	3 cut(s)	264, 358, 425
Bsh1236I	CGCG	1 cut(s)	14
BsiSI	CCGG	2 cut(s)	84, 228
BslFI	GGGAC	2 cut(s)	242, 586
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	1 cut(s)	85
BsmFI	GGGAC	2 cut(s)	242, 586
Bsp13I	TCCGGA	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	89, 610
BspACI	CCGC	4 cut(s)	14, 49, 66, 159
BspCNI	CTCAG	3 cut(s)	263, 357, 426
BspEI	TCCGGA	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	14
BspPI	GGATC	2 cut(s)	97, 605
BssMI	GATC	2 cut(s)	89, 610
BssNI	GRCGYC	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	4 cut(s)	119, 514, 520, 587
Bst6I	CTCTTC	1 cut(s)	136
BstACI	GRCGYC	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	350, 354
BstDEI	CTNAG	4 cut(s)	5, 250, 344, 434
BstEII	GGTNACC	1 cut(s)	338
BstF5I	GGATG	3 cut(s)	50, 94, 417
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	2 cut(s)	92, 613
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	2 cut(s)	89, 610
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	1 cut(s)	442
BstPI	GGTNACC	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	226, 502
BstUI	CGCG	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BsuI	GTATCC	1 cut(s)	339
BtsCI	GGATG	3 cut(s)	50, 94, 417
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	3 cut(s)	69, 124, 592
Cac8I	GCNNGC	2 cut(s)	350, 354
Csp6I	GTAC	4 cut(s)	304, 313, 431, 507
CspCI	CAANNNNNGTGG	2 cut(s)	58, 93
CviAII	CATG	2 cut(s)	320, 439
CviJI	RGCY	7 cut(s)	25, 218, 275, 412, 502, 538, 581
CviKI_1	RGCY	7 cut(s)	25, 218, 275, 412, 502, 538, 581
CviQI	GTAC	4 cut(s)	304, 313, 431, 507
DdeI	CTNAG	4 cut(s)	5, 250, 344, 434
DpnI	GATC	2 cut(s)	91, 612
DpnII	GATC	2 cut(s)	89, 610
DraIII	CACNNNGTG	1 cut(s)	338
DriI	GACNNNNNGTC	1 cut(s)	598
Eam1104I	CTCTTC	1 cut(s)	136
Eam1105I	GACNNNNNGTC	1 cut(s)	598
EarI	CTCTTC	1 cut(s)	136
Eco32I	GATATC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	234
Eco91I	GGTNACC	1 cut(s)	338
EcoO65I	GGTNACC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	502
EcoRV	GATATC	1 cut(s)	238
FaeI	CATG	2 cut(s)	323, 442
FaiI	YATR	7 cut(s)	269, 278, 302, 321, 396, 440, 567
FaqI	GGGAC	2 cut(s)	242, 586
FatI	CATG	2 cut(s)	319, 438
FauI	CCCGC	2 cut(s)	7, 166
FblI	GTMKAC	1 cut(s)	591
FokI	GGATG	3 cut(s)	57, 81, 404
FspBI	CTAG	1 cut(s)	447
HapII	CCGG	2 cut(s)	84, 228
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	2 cut(s)	323, 442
HinfI	GANTC	5 cut(s)	9, 128, 283, 387, 406
HpaII	CCGG	2 cut(s)	84, 228
HphI	GGTGA	2 cut(s)	350, 476
Hpy166II	GTNNAC	2 cut(s)	484, 592
Hpy188I	TCNGA	3 cut(s)	139, 214, 253
Hpy188III	TCNNGA	3 cut(s)	84, 373, 608
Hpy8I	GTNNAC	2 cut(s)	484, 592
Hpy99I	CGWCG	2 cut(s)	61, 128
HpyAV	CCTTC	3 cut(s)	15, 297, 614
HpyCH4III	ACNGT	4 cut(s)	119, 514, 520, 587
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	1 cut(s)	356
HpyF3I	CTNAG	4 cut(s)	5, 250, 344, 434
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	323, 442
Kpn2I	TCCGGA	1 cut(s)	83
Kzo9I	GATC	2 cut(s)	89, 610
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	7 cut(s)	97, 241, 363, 489, 500, 516, 552
MaeI	CTAG	1 cut(s)	447
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	3 cut(s)	119, 338, 514
MalI	GATC	2 cut(s)	91, 612
MboI	GATC	2 cut(s)	89, 610
MboII	GAAGA	5 cut(s)	24, 30, 123, 282, 292
MflI	RGATCY	1 cut(s)	89
MluCI	AATT	3 cut(s)	175, 183, 297
MlyI	GAGTC	2 cut(s)	18, 122
MmeI	TCCRAC	1 cut(s)	516
MroI	TCCGGA	1 cut(s)	83
MspI	CCGG	2 cut(s)	84, 228
MspR9I	CCNGG	2 cut(s)	228, 504
MvaI	CCWGG	1 cut(s)	504
MvnI	CGCG	1 cut(s)	14
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	2 cut(s)	89, 610
NlaIII	CATG	2 cut(s)	323, 442
NmuCI	GTSAC	2 cut(s)	119, 338
NspI	RCATGY	1 cut(s)	442
PfeI	GAWTC	3 cut(s)	283, 387, 406
PfoI	TCCNGGA	1 cut(s)	226
PleI	GAGTC	2 cut(s)	17, 122
PpsI	GAGTC	2 cut(s)	17, 122
Psp6I	CCWGG	1 cut(s)	502
PspEI	GGTNACC	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	502
PsuI	RGATCY	1 cut(s)	89
RsaI	GTAC	4 cut(s)	305, 314, 432, 508
RsaNI	GTAC	4 cut(s)	304, 313, 431, 507
Sau3AI	GATC	2 cut(s)	89, 610
SchI	GAGTC	2 cut(s)	18, 122
ScrFI	CCNGG	2 cut(s)	228, 504
SetI	ASST	7 cut(s)	258, 277, 329, 345, 483, 489, 583
SmlI	CTYRAG	2 cut(s)	422, 476
SmoI	CTYRAG	2 cut(s)	422, 476
Sse9I	AATT	3 cut(s)	175, 183, 297
SsiI	CCGC	4 cut(s)	14, 49, 66, 159
SspMI	CTAG	1 cut(s)	447
StyD4I	CCNGG	2 cut(s)	226, 502
TaaI	ACNGT	4 cut(s)	119, 514, 520, 587
TaiI	ACGT	1 cut(s)	258
TasI	AATT	3 cut(s)	175, 183, 297
TatI	WGTACW	2 cut(s)	312, 430
TfiI	GAWTC	3 cut(s)	283, 387, 406
TscAI	CASTG	3 cut(s)	76, 124, 592
TseFI	GTSAC	2 cut(s)	119, 338
Tsp45I	GTSAC	2 cut(s)	119, 338
TspDTI	ATGAA	6 cut(s)	94, 153, 293, 336, 358, 535
TspRI	CASTG	3 cut(s)	76, 124, 592
XapI	RAATTY	1 cut(s)	183
XceI	RCATGY	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	591
XspI	CTAG	1 cut(s)	447
ZraI	GACGTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.