Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002457

Physical Location & Seq

Genomic Coordinates Reverse (-)

56980447 .. 56982094

Gene Structure 1648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG308100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGCTGGAGTTGGACTTTGCGAACAAAAATAGAAGAGAGCTTTTTGGTTTGCGAGGGCTAGCGAGCGATTTTAGAGGGAACAAGATGCTGAGAGTCGCCGGAAGAAGGCTTTCCTCCTCTGTTGGTGGCGCGTGGAGGTCGTCGCAGACATCTCCAGCCTTCCTCTCTCGATCCCATCCACTTTCCTTCAACAACAACGACGAGTCGTCCTCCGATGTCCCTTCCAGATCCCCCATCCAATCTCCATTTCTCATCAGAGGATTTTCCTCTGATGCCCTCGCTCCTGGACATGATTTTGGTGGTATGATCTCAGACGTCCCAGCTACTGTGGCAGCAGTGAAGAATCCTTCTTCAAAGATTGTATATGATGACTACAACCATGAAAGATACCCACCTGGTGATCCCAGCAAGCGTGCATTTGCTTATTTTGTCTTGACAGGTGGAAGGTTTGTGTATGCATCCTTGATCCGGCTTCTGGTCCTCAAGTTTGTTTTGAGCATGTCTGCCAGCAAAGATGTCCTTGCTCTTGCTTCCCTTGAGGTTGACCTATCCAGCATTGAGCCTGGCAGTACTGTTACTGTCAAGTGGAGGGGGAAGCCAGTTTTTATTAGGCGTAGAACTGAAGATGACATCAAGTTGGCTAATAGTATTGATGTTCAGTCACTTCGCGATCCTCAACAGGACTCAGAGAGGGTTAAGGATCCAGAATGGCTTATTGTTGTTGGTGTCTGCACTCACTTGGGGTGCATCCCCTTGCCAAATGCTGGTGACTTTGGCGGATGGTTTTGCCCATGCCATGGTTCACACTATGACATTTCTGGTAGGATCCGCAAGGGGCCTGCACCCTACAATCTTGAGGTACCCACTTACAATTTTTTGACCGAGAACAAGTTACTCATTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0006091 GO:0006950 GO:0008121 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016679 GO:0016681 GO:0019866 GO:0022900 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046872 GO:0050896 GO:0055114 GO:0070069 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Rieske UCR_TM

Protein Analysis

301

Amino Acids

33.16

Weight (kDa)

9.01

Isoelectric Point (pI)

61.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_TM	PF02921	134 - 172	1.4e-08	Ubiquinol cytochrome reductase transmembrane region
Rieske	PF00355	229 - 286	2.1e-08	Rieske [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13430 AT5G13440
fragaria_vesca	FvH4_4g22600 FvH4_6g54320
malus_domestica	MD05G1033200.v1.1 MD05G1252000.v1.1 MD09G1002400.v1.1 MD13G1131100.v1.1 MD13G1261000.v1.1 MD16G1141300.v1.1 MD17G1006600.v1.1
prunus_persica	Prupe.1G214500_v2.0.a1 Prupe.3G313800_v2.0.a1
pyrus_communis	pycom111g00190 pycom13g11440 pycom16g11180 pycom17g00220
rosa_chinensis	RchiOBHm_Chr2g0176541 RchiOBHm_Chr4g0428841
rosa_laevigata	RLG00000007121 RLG00000022421
rosa_multiflora	Rmu_co8327683.1_g000001 Rmu_sc0001417.1_g000007 Rmu_sc0008612.1_g000002 Rmu_sc0009525.1_g000003 Rmu_sc0011904.1_g000004 Rmu_sc0013114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076320 Rroxscaffold_5G00370520
rosa_rugosa	Rorug02G0596000.1 Rorug04G0229600
rosa_samantha	Rh2AG673800 Rh2BG685000 Rh2CG648000 Rh2DG698900 Rh4AG286300 Rh4BG292100 Rh4CG308100 Rh4DG289300
rosa_wichuraiana	Rw2G055270 Rw4G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	318
Acc65I	GGTACC	1 cut(s)	859
AccB1I	GGYRCC	1 cut(s)	859
AccB7I	CCANNNNNTGG	2 cut(s)	764, 797
AccII	CGCG	2 cut(s)	131, 669
AciI	CCGC	2 cut(s)	777, 829
AclWI	GGATC	9 cut(s)	165, 222, 395, 460, 665, 695, 708, 820, 833
AcuI	CTGAAG	1 cut(s)	642
AcyI	GRCGYC	1 cut(s)	315
AdeI	CACNNNGTG	1 cut(s)	398
AfaI	GTAC	2 cut(s)	571, 861
AfiI	CCNNNNNNNGG	5 cut(s)	105, 468, 475, 764, 797
AgsI	TTSAA	2 cut(s)	190, 354
AhdI	GACNNNNNGTC	1 cut(s)	205
AjnI	CCWGG	3 cut(s)	283, 394, 562
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	2 cut(s)	40, 323
AluI	AGCT	2 cut(s)	40, 323
AlwI	GGATC	9 cut(s)	165, 222, 395, 460, 665, 695, 708, 820, 833
AlwNI	CAGNNNCTG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	836
ApeKI	GCWGC	1 cut(s)	332
Asp700I	GAANNNNTTC	1 cut(s)	109
Asp718I	GGTACC	1 cut(s)	859
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	2 cut(s)	478, 836
AsuHPI	GGTGA	2 cut(s)	410, 779
AsuNHI	GCTAGC	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	478
BamHI	GGATCC	2 cut(s)	700, 825
BanI	GGYRCC	1 cut(s)	859
BbvI	GCAGC	1 cut(s)	344
BccI	CCATC	3 cut(s)	183, 242, 774
BciT130I	CCWGG	3 cut(s)	285, 396, 564
BfaI	CTAG	1 cut(s)	59
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
BmcAI	AGTACT	1 cut(s)	571
Bme1390I	CCNGG	3 cut(s)	285, 396, 564
Bme18I	GGWCC	1 cut(s)	478
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	478, 836
BmiI	GGNNCC	4 cut(s)	702, 827, 837, 861
BmrFI	CCNGG	3 cut(s)	285, 396, 564
BmsI	GCATC	4 cut(s)	75, 262, 467, 756
BmtI	GCTAGC	1 cut(s)	62
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
BpmI	CTGGAG	2 cut(s)	26, 138
BpuEI	CTTGAG	3 cut(s)	467, 557, 875
BsaHI	GRCGYC	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	796
Bsc4I	CCNNNNNNNGG	5 cut(s)	105, 468, 475, 764, 797
Bse1I	ACTGG	1 cut(s)	599
BseBI	CCWGG	3 cut(s)	285, 396, 564
BseDI	CCNNGG	1 cut(s)	796
BseGI	GGATG	5 cut(s)	175, 234, 458, 747, 785
BseLI	CCNNNNNNNGG	5 cut(s)	105, 468, 475, 764, 797
BseMII	CTCAG	3 cut(s)	80, 324, 699
BseNI	ACTGG	1 cut(s)	599
BseRI	GAGGAG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	344
BseYI	CCCAGC	2 cut(s)	319, 404
BsgI	GTGCAG	2 cut(s)	715, 825
Bsh1236I	CGCG	2 cut(s)	131, 669
BshFI	GGCC	1 cut(s)	838
BshNI	GGYRCC	1 cut(s)	859
BsiSI	CCGG	2 cut(s)	99, 469
BslFI	GGGAC	2 cut(s)	203, 302
BslI	CCNNNNNNNGG	5 cut(s)	105, 468, 475, 764, 797
BsmFI	GGGAC	2 cut(s)	203, 302
BsnI	GGCC	1 cut(s)	838
Bsp143I	GATC	8 cut(s)	170, 227, 306, 400, 465, 670, 700, 825
Bsp19I	CCATGG	1 cut(s)	796
Bsp68I	TCGCGA	1 cut(s)	669
BspACI	CCGC	2 cut(s)	777, 829
BspANI	GGCC	1 cut(s)	838
BspCNI	CTCAG	3 cut(s)	81, 323, 698
BspFNI	CGCG	2 cut(s)	131, 669
BspLI	GGNNCC	4 cut(s)	702, 827, 837, 861
BspOI	GCTAGC	1 cut(s)	62
BspPI	GGATC	9 cut(s)	165, 222, 395, 460, 665, 695, 708, 820, 833
BspT107I	GGYRCC	1 cut(s)	859
BsrI	ACTGG	1 cut(s)	599
BssECI	CCNNGG	1 cut(s)	796
BssMI	GATC	8 cut(s)	170, 227, 306, 400, 465, 670, 700, 825
BssNI	GRCGYC	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	796
Bst2UI	CCWGG	3 cut(s)	285, 396, 564
Bst4CI	ACNGT	3 cut(s)	328, 574, 580
Bst6I	CTCTTC	1 cut(s)	28
BstACI	GRCGYC	1 cut(s)	315
BstC8I	GCNNGC	6 cut(s)	60, 64, 410, 414, 508, 840
BstDEI	CTNAG	3 cut(s)	89, 310, 685
BstDSI	CCRYGG	1 cut(s)	796
BstF5I	GGATG	5 cut(s)	175, 234, 458, 747, 785
BstFNI	CGCG	2 cut(s)	131, 669
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	8 cut(s)	173, 230, 309, 403, 468, 673, 703, 828
BstMBI	GATC	8 cut(s)	170, 227, 306, 400, 465, 670, 700, 825
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	3 cut(s)	285, 396, 564
BstNSI	RCATGY	1 cut(s)	502
BstSCI	CCNGG	3 cut(s)	283, 394, 562
BstUI	CGCG	2 cut(s)	131, 669
BstV1I	GCAGC	1 cut(s)	344
BstX2I	RGATCY	3 cut(s)	227, 700, 825
BstYI	RGATCY	3 cut(s)	227, 700, 825
BsuRI	GGCC	1 cut(s)	838
BtgI	CCRYGG	1 cut(s)	796
BtsCI	GGATG	5 cut(s)	175, 234, 458, 747, 785
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
BtuMI	TCGCGA	1 cut(s)	669
Cac8I	GCNNGC	6 cut(s)	60, 64, 410, 414, 508, 840
CaiI	CAGNNNCTG	1 cut(s)	326
CfoI	GCGC	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	478, 836
CsiI	ACCWGGT	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	570, 860
CviAII	CATG	5 cut(s)	290, 380, 499, 792, 797
CviQI	GTAC	2 cut(s)	570, 860
DdeI	CTNAG	3 cut(s)	89, 310, 685
DpnI	GATC	8 cut(s)	172, 229, 308, 402, 467, 672, 702, 827
DpnII	GATC	8 cut(s)	170, 227, 306, 400, 465, 670, 700, 825
DraIII	CACNNNGTG	1 cut(s)	398
DriI	GACNNNNNGTC	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	28
Eam1105I	GACNNNNNGTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	28
EciI	GGCGGA	1 cut(s)	792
Eco130I	CCWWGG	1 cut(s)	796
Eco47I	GGWCC	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	642
EcoO109I	RGGNCCY	1 cut(s)	836
EcoRII	CCWGG	3 cut(s)	283, 394, 562
EcoT14I	CCWWGG	1 cut(s)	796
EcoT22I	ATGCAT	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	796
FaeI	CATG	5 cut(s)	293, 383, 502, 795, 800
FalI	AAGNNNNNCTT	2 cut(s)	504, 536
FaqI	GGGAC	2 cut(s)	203, 302
FatI	CATG	5 cut(s)	289, 379, 498, 791, 796
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	5 cut(s)	162, 221, 445, 734, 792
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	333
GsaI	CCCAGC	2 cut(s)	323, 408
GsuI	CTGGAG	2 cut(s)	26, 138
HaeIII	GGCC	1 cut(s)	838
HapII	CCGG	2 cut(s)	99, 469
HhaI	GCGC	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	5 cut(s)	293, 383, 502, 795, 800
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	4 cut(s)	93, 203, 343, 683
HpaII	CCGG	2 cut(s)	99, 469
HphI	GGTGA	2 cut(s)	410, 779
Hpy166II	GTNNAC	2 cut(s)	544, 803
Hpy188I	TCNGA	5 cut(s)	214, 257, 271, 313, 688
Hpy188III	TCNNGA	6 cut(s)	168, 225, 433, 668, 704, 854
Hpy8I	GTNNAC	2 cut(s)	544, 803
Hpy99I	CGWCG	2 cut(s)	145, 203
HpyAV	CCTTC	6 cut(s)	99, 169, 196, 231, 357, 438
HpyCH4III	ACNGT	3 cut(s)	328, 574, 580
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	5 cut(s)	416, 458, 732, 747, 842
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	3 cut(s)	89, 310, 685
HpySE526I	ACGT	1 cut(s)	315
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	5 cut(s)	293, 383, 502, 795, 800
HspAI	GCGC	1 cut(s)	129
KpnI	GGTACC	1 cut(s)	863
Kzo9I	GATC	8 cut(s)	170, 227, 306, 400, 465, 670, 700, 825
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	1 cut(s)	344
LweI	GCATC	4 cut(s)	75, 262, 467, 756
MabI	ACCWGGT	1 cut(s)	394
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	4 cut(s)	574, 660, 767, 891
MalI	GATC	8 cut(s)	172, 229, 308, 402, 467, 672, 702, 827
MboI	GATC	8 cut(s)	170, 227, 306, 400, 465, 670, 700, 825
MboII	GAAGA	5 cut(s)	45, 114, 342, 352, 635
MflI	RGATCY	3 cut(s)	227, 700, 825
MluCI	AATT	1 cut(s)	871
MlyI	GAGTC	3 cut(s)	102, 212, 677
Mph1103I	ATGCAT	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	109
MseI	TTAA	1 cut(s)	696
MspI	CCGG	2 cut(s)	99, 469
MspR9I	CCNGG	3 cut(s)	285, 396, 564
MvaI	CCWGG	3 cut(s)	285, 396, 564
MvnI	CGCG	2 cut(s)	131, 669
MwoI	GCNNNNNNNGC	1 cut(s)	329
NcoI	CCATGG	1 cut(s)	796
NdeII	GATC	8 cut(s)	170, 227, 306, 400, 465, 670, 700, 825
NheI	GCTAGC	1 cut(s)	58
NlaIII	CATG	5 cut(s)	293, 383, 502, 795, 800
NlaIV	GGNNCC	4 cut(s)	702, 827, 837, 861
NmuCI	GTSAC	2 cut(s)	660, 767
NruI	TCGCGA	1 cut(s)	669
NsiI	ATGCAT	1 cut(s)	460
NspI	RCATGY	1 cut(s)	502
PdmI	GAANNNNTTC	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	343
PflMI	CCANNNNNTGG	2 cut(s)	764, 797
PfoI	TCCNGGA	1 cut(s)	283
PkrI	GCNGC	1 cut(s)	334
PleI	GAGTC	3 cut(s)	101, 211, 677
PpsI	GAGTC	3 cut(s)	101, 211, 677
Psp6I	CCWGG	3 cut(s)	283, 394, 562
PspFI	CCCAGC	2 cut(s)	319, 404
PspGI	CCWGG	3 cut(s)	283, 394, 562
PspN4I	GGNNCC	4 cut(s)	702, 827, 837, 861
PspPI	GGNCC	2 cut(s)	478, 836
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	3 cut(s)	227, 700, 825
RruI	TCGCGA	1 cut(s)	669
RsaI	GTAC	2 cut(s)	571, 861
RsaNI	GTAC	2 cut(s)	570, 860
SaqAI	TTAA	1 cut(s)	696
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	8 cut(s)	170, 227, 306, 400, 465, 670, 700, 825
Sau96I	GGNCC	2 cut(s)	478, 836
ScaI	AGTACT	1 cut(s)	571
SchI	GAGTC	3 cut(s)	102, 212, 677
ScrFI	CCNGG	3 cut(s)	285, 396, 564
SexAI	ACCWGGT	1 cut(s)	394
SfaNI	GCATC	4 cut(s)	75, 262, 467, 756
SinI	GGWCC	1 cut(s)	478
SmlI	CTYRAG	3 cut(s)	482, 536, 854
SmoI	CTYRAG	3 cut(s)	482, 536, 854
Sse9I	AATT	1 cut(s)	871
SsiI	CCGC	2 cut(s)	777, 829
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	3 cut(s)	283, 394, 562
StyI	CCWWGG	1 cut(s)	796
TaaI	ACNGT	3 cut(s)	328, 574, 580
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	1 cut(s)	169
TaqII	GACCGA	1 cut(s)	896
TasI	AATT	1 cut(s)	871
TatI	WGTACW	1 cut(s)	569
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	1 cut(s)	696
Tru9I	TTAA	1 cut(s)	696
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	2 cut(s)	660, 767
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	2 cut(s)	660, 767
TspDTI	ATGAA	1 cut(s)	396
TspRI	CASTG	1 cut(s)	342
Van91I	CCANNNNNTGG	2 cut(s)	764, 797
VpaK11BI	GGWCC	1 cut(s)	478
XceI	RCATGY	1 cut(s)	502
XmnI	GAANNNNTTC	1 cut(s)	109
XspI	CTAG	1 cut(s)	59
ZraI	GACGTC	1 cut(s)	316
ZrmI	AGTACT	1 cut(s)	571
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.