Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Reverse (-)

7888461 .. 7890355

Gene Structure 1895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCTGGACCATCGACAACTTCAAACGCACCAAAGCAGAGGAAGAGAGTCGAAGCCGAGACTAGCAGCAACACTTCTACTACCTTACGTCGCGCTAAAGACGGAAGCGCTTTCGCTCTCTGTGAAGGATGTAACAAGAGTGTAGCTGTAGCGCTTATAAGCATGCACAATTGCAGTCTCGATGCTAAGATCAGAGTGAATCTCGAAGCACAAGTTGTGGAGACACAAGCAGAGGCTAAGAAGAAGCCTGCAGAGAAGAAGAAGACAACATCTGATGGACCTAAGCCAAAGAGACTTAAGAAAACCAATGATGAGAAGAAGAGCTCGTCTACTTCAAACAAGCCCAAGCGACCTCTTACCGCTTTCTTTATCTTCATGAGTGACTTCCGTAAAACGTTTAAGTCAGAGCATAATGGTTCGTTAGCTAAGGATGCTGCAAAGATCGGTGGTGAGAAGTGGAAGTCTTTGACTGAGGAAGAGAAGAAAGTTTATCTGGATAAAGCTGCTGAACTTAAGGCAGAGTATAACAAGTCACTGGAAAGTAATGATGCTGATGAGGAAGAGGAAGATGAGGAGAAGCAATCTGATGATGTTGATGATGCTGAGGAGAAACAAGTTGACGATGATGATGAAGTTGAGGAGAAAGAAGTTGAGAACACAGATGATGACAAGAAAGAAGCTGAGGGTAAAGAAGAGGAGGAAGAAGAGATTTTGGATGACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

241

Amino Acids

26.98

Weight (kDa)

4.83

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	329
AccII	CGCG	1 cut(s)	93
AciI	CCGC	1 cut(s)	360
AclI	AACGTT	1 cut(s)	395
AfeI	AGCGCT	2 cut(s)	109, 153
AflII	CTTAAG	2 cut(s)	296, 512
AgsI	TTSAA	2 cut(s)	24, 336
AluBI	AGCT	5 cut(s)	146, 324, 425, 503, 680
AluI	AGCT	5 cut(s)	146, 324, 425, 503, 680
Alw21I	GWGCWC	1 cut(s)	326
Alw26I	GTCTC	4 cut(s)	53, 182, 215, 286
Aor51HI	AGCGCT	2 cut(s)	109, 153
ApeKI	GCWGC	3 cut(s)	66, 434, 503
AspLEI	GCGC	3 cut(s)	95, 110, 154
AspS9I	GGNCC	2 cut(s)	8, 278
AsuHPI	GGTGA	1 cut(s)	461
AvaII	GGWCC	2 cut(s)	8, 278
BanII	GRGCYC	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	326
BbvCI	CCTCAGC	2 cut(s)	603, 681
BbvI	GCAGC	3 cut(s)	78, 421, 490
BccI	CCATC	2 cut(s)	19, 269
BcoDI	GTCTC	4 cut(s)	53, 182, 215, 286
BfaI	CTAG	2 cut(s)	63, 724
BfmI	CTRYAG	2 cut(s)	147, 249
BfoI	RGCGCY	2 cut(s)	111, 155
BfrI	CTTAAG	2 cut(s)	296, 512
BisI	GCNGC	3 cut(s)	67, 435, 504
BlsI	GCNGC	3 cut(s)	68, 436, 505
Bme18I	GGWCC	2 cut(s)	8, 278
BmgT120I	GGNCC	2 cut(s)	8, 278
BmsI	GCATC	4 cut(s)	172, 421, 538, 589
BpiI	GAAGAC	1 cut(s)	269
BplI	GAGNNNNNCTC	2 cut(s)	186, 218
Bpu10I	CCTNAGC	4 cut(s)	282, 426, 603, 681
Bse1I	ACTGG	1 cut(s)	540
BseGI	GGATG	3 cut(s)	134, 436, 721
BseMII	CTCAG	3 cut(s)	462, 594, 672
BseNI	ACTGG	1 cut(s)	540
BseRI	GAGGAG	4 cut(s)	587, 620, 653, 710
BseXI	GCAGC	3 cut(s)	78, 421, 490
Bsh1236I	CGCG	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	326
BsmAI	GTCTC	4 cut(s)	53, 182, 215, 286
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp143I	GATC	2 cut(s)	189, 441
BspACI	CCGC	1 cut(s)	360
BspCNI	CTCAG	3 cut(s)	463, 595, 673
BspFNI	CGCG	1 cut(s)	93
BspHI	TCATGA	1 cut(s)	375
BspMAI	CTGCAG	1 cut(s)	253
BspQI	GCTCTTC	1 cut(s)	314
BspTI	CTTAAG	2 cut(s)	296, 512
BsrI	ACTGG	1 cut(s)	540
BssMI	GATC	2 cut(s)	189, 441
Bst6I	CTCTTC	6 cut(s)	38, 314, 471, 555, 687, 699
BstAFI	CTTAAG	2 cut(s)	296, 512
BstC8I	GCNNGC	2 cut(s)	164, 249
BstDEI	CTNAG	7 cut(s)	186, 237, 282, 426, 471, 603, 681
BstF5I	GGATG	3 cut(s)	134, 436, 721
BstFNI	CGCG	1 cut(s)	93
BstH2I	RGCGCY	2 cut(s)	111, 155
BstHHI	GCGC	3 cut(s)	95, 110, 154
BstKTI	GATC	2 cut(s)	192, 444
BstMAI	GTCTC	4 cut(s)	53, 182, 215, 286
BstMBI	GATC	2 cut(s)	189, 441
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNSI	RCATGY	1 cut(s)	166
BstSFI	CTRYAG	2 cut(s)	147, 249
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	3 cut(s)	78, 421, 490
BstV2I	GAAGAC	1 cut(s)	269
BtsCI	GGATG	3 cut(s)	134, 436, 721
BtsIMutI	CAGTG	1 cut(s)	533
Cac8I	GCNNGC	2 cut(s)	164, 249
CciI	TCATGA	1 cut(s)	375
CfoI	GCGC	3 cut(s)	95, 110, 154
Cfr13I	GGNCC	2 cut(s)	8, 278
CviAII	CATG	2 cut(s)	163, 376
DdeI	CTNAG	7 cut(s)	186, 237, 282, 426, 471, 603, 681
DpnI	GATC	2 cut(s)	191, 443
DpnII	GATC	2 cut(s)	189, 441
Eam1104I	CTCTTC	6 cut(s)	38, 314, 471, 555, 687, 699
EarI	CTCTTC	6 cut(s)	38, 314, 471, 555, 687, 699
Ecl136II	GAGCTC	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	326
Eco47I	GGWCC	2 cut(s)	8, 278
Eco47III	AGCGCT	2 cut(s)	109, 153
Eco53kI	GAGCTC	1 cut(s)	324
EcoICRI	GAGCTC	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	326
FaeI	CATG	2 cut(s)	166, 379
FaiI	YATR	5 cut(s)	158, 164, 377, 411, 525
FatI	CATG	2 cut(s)	162, 375
FblI	GTMKAC	1 cut(s)	329
Fnu4HI	GCNGC	3 cut(s)	67, 435, 504
FokI	GGATG	2 cut(s)	141, 443
FriOI	GRGCYC	1 cut(s)	326
Fsp4HI	GCNGC	3 cut(s)	67, 435, 504
FspBI	CTAG	2 cut(s)	63, 724
GlaI	GCGC	3 cut(s)	94, 109, 153
GluI	GCNGC	3 cut(s)	67, 435, 504
HaeII	RGCGCY	2 cut(s)	111, 155
HhaI	GCGC	3 cut(s)	95, 110, 154
Hin1II	CATG	2 cut(s)	166, 379
Hin6I	GCGC	3 cut(s)	93, 108, 152
HinP1I	GCGC	3 cut(s)	93, 108, 152
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HinfI	GANTC	2 cut(s)	48, 199
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	2 cut(s)	330, 619
Hpy188I	TCNGA	4 cut(s)	194, 274, 406, 586
Hpy188III	TCNNGA	4 cut(s)	179, 203, 376, 494
Hpy8I	GTNNAC	2 cut(s)	330, 619
Hpy99I	CGWCG	1 cut(s)	93
HpyAV	CCTTC	1 cut(s)	119
HpyCH4IV	ACGT	2 cut(s)	88, 395
HpyCH4V	TGCA	4 cut(s)	166, 174, 251, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	7 cut(s)	186, 237, 282, 426, 471, 603, 681
HpySE526I	ACGT	2 cut(s)	88, 395
Hsp92II	CATG	2 cut(s)	166, 379
HspAI	GCGC	3 cut(s)	93, 108, 152
Kzo9I	GATC	2 cut(s)	189, 441
LguI	GCTCTTC	1 cut(s)	314
LpnPI	CCDG	3 cut(s)	261, 479, 521
Lsp1109I	GCAGC	3 cut(s)	78, 421, 490
LweI	GCATC	4 cut(s)	172, 421, 538, 589
MaeI	CTAG	2 cut(s)	63, 724
MaeII	ACGT	2 cut(s)	88, 395
MaeIII	GTNAC	3 cut(s)	131, 380, 531
MalI	GATC	2 cut(s)	191, 443
MboI	GATC	2 cut(s)	189, 441
MfeI	CAATTG	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	326
MluCI	AATT	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	57
MseI	TTAA	3 cut(s)	297, 399, 513
MspCI	CTTAAG	2 cut(s)	296, 512
MunI	CAATTG	1 cut(s)	169
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	431
NdeII	GATC	2 cut(s)	189, 441
NlaIII	CATG	2 cut(s)	166, 379
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	2 cut(s)	380, 531
NspI	RCATGY	1 cut(s)	166
PaeI	GCATGC	1 cut(s)	166
PagI	TCATGA	1 cut(s)	375
PciSI	GCTCTTC	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	3 cut(s)	68, 436, 505
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PsiI	TTATAA	1 cut(s)	158
Psp124BI	GAGCTC	1 cut(s)	326
Psp1406I	AACGTT	1 cut(s)	395
PspPI	GGNCC	2 cut(s)	8, 278
PstI	CTGCAG	1 cut(s)	253
SacI	GAGCTC	1 cut(s)	326
SapI	GCTCTTC	1 cut(s)	314
SaqAI	TTAA	3 cut(s)	297, 399, 513
SatI	GCNGC	3 cut(s)	67, 435, 504
Sau3AI	GATC	2 cut(s)	189, 441
Sau96I	GGNCC	2 cut(s)	8, 278
SchI	GAGTC	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	326
SfaNI	GCATC	4 cut(s)	172, 421, 538, 589
SfcI	CTRYAG	2 cut(s)	147, 249
SinI	GGWCC	2 cut(s)	8, 278
SmlI	CTYRAG	2 cut(s)	296, 512
SmoI	CTYRAG	2 cut(s)	296, 512
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	1 cut(s)	360
SspMI	CTAG	2 cut(s)	63, 724
SstI	GAGCTC	1 cut(s)	326
TaiI	ACGT	2 cut(s)	91, 398
TaqI	TCGA	4 cut(s)	14, 51, 180, 204
TasI	AATT	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	3 cut(s)	297, 399, 513
Tru9I	TTAA	3 cut(s)	297, 399, 513
TscAI	CASTG	1 cut(s)	540
TseFI	GTSAC	2 cut(s)	380, 531
TseI	GCWGC	3 cut(s)	66, 434, 503
Tsp45I	GTSAC	2 cut(s)	380, 531
TspDTI	ATGAA	2 cut(s)	364, 645
TspGWI	ACGGA	2 cut(s)	117, 377
TspRI	CASTG	1 cut(s)	540
Vha464I	CTTAAG	2 cut(s)	296, 512
VpaK11BI	GGWCC	2 cut(s)	8, 278
XceI	RCATGY	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	329
XspI	CTAG	2 cut(s)	63, 724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.