Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Forward (+)

33814693 .. 33816280

Gene Structure 1588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g37280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGAGGTGGGTCAATGAAATCGAACCCAACCAGGTCGAGGAAGAGGGTGGAGGCCACGGCGGAGGACGACTCCTCTAGACCTTCTCTTGTTCGCGGCAAGGACGGCAGTGCCTTTGCCCGCTGCGAGGGGTGCAAAAAGGATGTCCCCGTGGCAACCATAAGCTTTCACAGTTGTAGCCTTGACGCCAAAATCAGGAACAATCTGGAGGCTCAAGTCGTCGAAAAGCCCAGCCAAGTGACTAAGAAGCCTCCCACTGCCGGGAAGAAGAAATCGACTACGTCGGAACCAAATGCAAAGAGAGTCAAGACTGACAAGGTTAAGAAGAGCAAGGATCCAAATGCACCCAAGCGCCCTCTCACTGCCTTCTTCCTATTCATGGCTGATTTTAGGAAATCTTACAAGGAAGCTAATCCTGATTCTAAGGATGTTAAGAAGGTTGCAAAAGAGGGTGGTGAAAAGTGGAAACTTTTGACTGATGAGGAGAAGAAACCTTACATTGACAAAGCTGATGAGCTGAAAGCTGAGTTCAAAAAGACCTTGGAGACTGAAGCTGATGATGCTGAAGATGTTGATGGTGAAGCTGAAGATGCTTCAGAAAAGGAAGTGCCAGAGAAGGAAGTGGAAGAAGTATCAGATGGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

216

Amino Acids

23.74

Weight (kDa)

7.59

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	113 - 182	6.5e-14	HMG-box domain
HMG_box	PF00505	116 - 180	2e-19	HMG (high mobility group) box
HMG_WDHD1	PF24815	119 - 169	5.7e-16	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	96
AciI	CCGC	3 cut(s)	62, 96, 121
AclWI	GGATC	2 cut(s)	329, 342
AcuI	CTGAAG	4 cut(s)	570, 579, 585, 606
AcyI	GRCGYC	1 cut(s)	186
AfiI	CCNNNNNNNGG	6 cut(s)	39, 127, 195, 260, 261, 379
AgsI	TTSAA	1 cut(s)	532
AjnI	CCWGG	1 cut(s)	32
AluBI	AGCT	7 cut(s)	165, 410, 509, 517, 524, 554, 584
AluI	AGCT	7 cut(s)	165, 410, 509, 517, 524, 554, 584
Alw26I	GTCTC	1 cut(s)	539
AlwI	GGATC	2 cut(s)	329, 342
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	123
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
AspLEI	GCGC	1 cut(s)	354
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	2 cut(s)	467, 590
BamHI	GGATCC	1 cut(s)	334
BarI	GAAGNNNNNNTAC	2 cut(s)	479, 511
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	2 cut(s)	569, 632
BceAI	ACGGC	2 cut(s)	75, 121
BciT130I	CCWGG	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	1 cut(s)	78
BfoI	RGCGCY	1 cut(s)	355
BisI	GCNGC	2 cut(s)	97, 124
BlsI	GCNGC	2 cut(s)	98, 125
Bme1390I	CCNGG	2 cut(s)	34, 262
BmiI	GGNNCC	2 cut(s)	288, 336
BmrFI	CCNGG	2 cut(s)	34, 262
BmsI	GCATC	2 cut(s)	550, 580
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BpmI	CTGGAG	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	262
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	57, 150, 540
Bsc4I	CCNNNNNNNGG	6 cut(s)	39, 127, 195, 260, 261, 379
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	3 cut(s)	57, 150, 540
BseGI	GGATG	2 cut(s)	148, 433
BseLI	CCNNNNNNNGG	6 cut(s)	39, 127, 195, 260, 261, 379
BseMII	CTCAG	1 cut(s)	516
BseRI	GAGGAG	2 cut(s)	64, 497
BseXI	GCAGC	1 cut(s)	110
BseYI	CCCAGC	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	6 cut(s)	39, 127, 195, 260, 261, 379
BsmAI	GTCTC	1 cut(s)	539
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	334
BspACI	CCGC	3 cut(s)	62, 96, 121
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	517
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	288, 336
BspPI	GGATC	2 cut(s)	329, 342
BspQI	GCTCTTC	1 cut(s)	320
BssECI	CCNNGG	3 cut(s)	57, 150, 540
BssMI	GATC	1 cut(s)	334
BssNI	GRCGYC	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	173
Bst6I	CTCTTC	2 cut(s)	38, 320
BstACI	GRCGYC	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	3 cut(s)	243, 423, 525
BstDSI	CCRYGG	2 cut(s)	57, 150
BstF5I	GGATG	2 cut(s)	148, 433
BstFNI	CGCG	1 cut(s)	96
BstH2I	RGCGCY	1 cut(s)	355
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 132, 560, 590
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	2 cut(s)	32, 260
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	56
BtgI	CCRYGG	2 cut(s)	57, 150
BtsCI	GGATG	2 cut(s)	148, 433
BtsI	GCAGTG	3 cut(s)	115, 255, 360
BtsIMutI	CAGTG	3 cut(s)	115, 255, 360
Cac8I	GCNNGC	1 cut(s)	121
CfoI	GCGC	1 cut(s)	354
CseI	GACGC	1 cut(s)	194
CsiI	ACCWGGT	1 cut(s)	32
CviAII	CATG	1 cut(s)	379
DdeI	CTNAG	3 cut(s)	243, 423, 525
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
Eam1104I	CTCTTC	2 cut(s)	38, 320
EarI	CTCTTC	2 cut(s)	38, 320
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	540
Eco57I	CTGAAG	4 cut(s)	570, 579, 585, 606
EcoRII	CCWGG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	1 cut(s)	382
FaiI	YATR	2 cut(s)	161, 380
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	1 cut(s)	378
FauI	CCCGC	1 cut(s)	128
Fnu4HI	GCNGC	2 cut(s)	97, 124
FokI	GGATG	2 cut(s)	155, 440
Fsp4HI	GCNGC	2 cut(s)	97, 124
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	2 cut(s)	97, 124
GsaI	CCCAGC	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	227
HaeII	RGCGCY	1 cut(s)	355
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	1 cut(s)	261
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	1 cut(s)	354
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	382
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HindIII	AAGCTT	1 cut(s)	163
HinfI	GANTC	3 cut(s)	71, 303, 419
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	2 cut(s)	467, 590
Hpy188I	TCNGA	3 cut(s)	286, 598, 637
Hpy188III	TCNNGA	5 cut(s)	78, 196, 206, 307, 416
Hpy99I	CGWCG	2 cut(s)	224, 286
HpyAV	CCTTC	4 cut(s)	93, 376, 430, 610
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	4 cut(s)	135, 296, 344, 443
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 132, 560, 590
HpyF3I	CTNAG	3 cut(s)	243, 423, 525
HpySE526I	ACGT	1 cut(s)	281
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	382
HspAI	GCGC	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	334
LguI	GCTCTTC	1 cut(s)	320
LpnPI	CCDG	8 cut(s)	19, 46, 181, 191, 244, 274, 429, 624
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	2 cut(s)	550, 580
MabI	ACCWGGT	1 cut(s)	32
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	9 cut(s)	55, 277, 280, 337, 361, 499, 578, 599, 638
MflI	RGATCY	1 cut(s)	334
MlyI	GAGTC	2 cut(s)	65, 312
MmeI	TCCRAC	1 cut(s)	264
MseI	TTAA	2 cut(s)	321, 432
MspA1I	CMGCKG	1 cut(s)	123
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	2 cut(s)	34, 262
MvaI	CCWGG	1 cut(s)	34
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	4 cut(s)	105, 132, 560, 590
NciI	CCSGG	1 cut(s)	262
NdeII	GATC	1 cut(s)	334
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	2 cut(s)	288, 336
NmuCI	GTSAC	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	419
PflFI	GACNNNGTC	1 cut(s)	280
PkrI	GCNGC	2 cut(s)	98, 125
PleI	GAGTC	2 cut(s)	65, 311
PpsI	GAGTC	2 cut(s)	65, 311
Psp6I	CCWGG	1 cut(s)	32
PspFI	CCCAGC	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	2 cut(s)	288, 336
PsuI	RGATCY	1 cut(s)	334
PsyI	GACNNNGTC	1 cut(s)	280
SapI	GCTCTTC	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	321, 432
SatI	GCNGC	2 cut(s)	97, 124
Sau3AI	GATC	1 cut(s)	334
SchI	GAGTC	2 cut(s)	65, 312
ScrFI	CCNGG	2 cut(s)	34, 262
SexAI	ACCWGGT	1 cut(s)	32
SfaNI	GCATC	2 cut(s)	550, 580
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
SsiI	CCGC	3 cut(s)	62, 96, 121
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	32, 260
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	1 cut(s)	173
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	4 cut(s)	23, 38, 222, 275
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	2 cut(s)	321, 432
Tru9I	TTAA	2 cut(s)	321, 432
TscAI	CASTG	3 cut(s)	115, 262, 367
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	32, 367
TspRI	CASTG	3 cut(s)	115, 262, 367
Tth111I	GACNNNGTC	1 cut(s)	280
XbaI	TCTAGA	1 cut(s)	77
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.