Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Reverse (-)

30671279 .. 30672158

Gene Structure 880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG275400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGTTGAAAGAGGAGGCGGCGCCGATGTTGAGCGTGGAGGCTTCTGCCACAGGTTCGGAGGTGACCGTGGTCGCGGCGGTAGGCGCCGCGATGCTGGGCCTGAGAGAATCATGAAGATCATGCCGGTTCAGAAGCAAACCGTTTTGGTTAGAGGACTCACTTCTTCTGTTGTGTTGGTAAATTTCTATTGGTTCTTTGATGATAACTTGAATATATATCTGAGTGAGGCGGCTATCAAGGAGGAAAGACATGAGGCATGGCGCGCTAAAAAGGAATTGAAGGGACTTTACAGGGGTGAAGTGCAGCATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.88

Weight (kDa)

9.72

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	20, 84
AccII	CGCG	3 cut(s)	75, 90, 264
AciI	CCGC	5 cut(s)	18, 75, 78, 88, 230
AcsI	RAATTY	1 cut(s)	181
AcyI	GRCGYC	2 cut(s)	21, 85
AgsI	TTSAA	3 cut(s)	8, 211, 280
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	304
ApoI	RAATTY	1 cut(s)	181
AspLEI	GCGC	4 cut(s)	23, 87, 264, 266
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	2 cut(s)	74, 308
BanI	GGYRCC	2 cut(s)	20, 84
BarI	GAAGNNNNNNTAC	2 cut(s)	272, 304
BfoI	RGCGCY	2 cut(s)	24, 88
BisI	GCNGC	5 cut(s)	19, 76, 88, 231, 305
BlsI	GCNGC	5 cut(s)	20, 77, 89, 232, 306
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	2 cut(s)	22, 86
BmsI	GCATC	1 cut(s)	82
BoxI	GACNNNNGTC	1 cut(s)	69
BsaHI	GRCGYC	2 cut(s)	21, 85
BsaJI	CCNNGG	1 cut(s)	67
Bse118I	RCCGGY	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	67
BseMII	CTCAG	2 cut(s)	93, 212
BsePI	GCGCGC	1 cut(s)	262
BseRI	GAGGAG	1 cut(s)	27
BseYI	CCCAGC	1 cut(s)	95
Bsh1236I	CGCG	3 cut(s)	75, 90, 264
BshFI	GGCC	1 cut(s)	100
BshNI	GGYRCC	2 cut(s)	20, 84
BsiSI	CCGG	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	297
BsmFI	GGGAC	1 cut(s)	297
BsnI	GGCC	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	5 cut(s)	18, 75, 78, 88, 230
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	2 cut(s)	94, 213
BspFNI	CGCG	3 cut(s)	75, 90, 264
BspHI	TCATGA	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	22, 86
BspT107I	GGYRCC	2 cut(s)	20, 84
BsrFI	RCCGGY	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	67
BssHII	GCGCGC	1 cut(s)	262
BssMI	GATC	1 cut(s)	117
BssNI	GRCGYC	2 cut(s)	21, 85
Bst4CI	ACNGT	2 cut(s)	68, 142
BstACI	GRCGYC	2 cut(s)	21, 85
BstC8I	GCNNGC	2 cut(s)	264, 309
BstDEI	CTNAG	3 cut(s)	102, 221, 312
BstDSI	CCRYGG	1 cut(s)	67
BstEII	GGTNACC	1 cut(s)	62
BstFNI	CGCG	3 cut(s)	75, 90, 264
BstH2I	RGCGCY	2 cut(s)	24, 88
BstHHI	GCGC	4 cut(s)	23, 87, 264, 266
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 263
BstNSI	RCATGY	1 cut(s)	311
BstPAI	GACNNNNGTC	1 cut(s)	69
BstPI	GGTNACC	1 cut(s)	62
BstUI	CGCG	3 cut(s)	75, 90, 264
BsuRI	GGCC	1 cut(s)	100
BtgI	CCRYGG	1 cut(s)	67
BtgZI	GCGATG	1 cut(s)	105
Cac8I	GCNNGC	2 cut(s)	264, 309
CciI	TCATGA	1 cut(s)	111
CfoI	GCGC	4 cut(s)	23, 87, 264, 266
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	98
CviAII	CATG	5 cut(s)	112, 121, 251, 258, 308
CviJI	RGCY	3 cut(s)	42, 100, 233
CviKI_1	RGCY	3 cut(s)	42, 100, 233
DdeI	CTNAG	3 cut(s)	102, 221, 312
DinI	GGCGCC	2 cut(s)	22, 86
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
Eco91I	GGTNACC	1 cut(s)	62
EcoO65I	GGTNACC	1 cut(s)	62
EgeI	GGCGCC	2 cut(s)	22, 86
EheI	GGCGCC	2 cut(s)	22, 86
FaeI	CATG	5 cut(s)	115, 124, 254, 261, 311
FaiI	YATR	7 cut(s)	113, 122, 215, 217, 252, 259, 309
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	5 cut(s)	111, 120, 250, 257, 307
Fnu4HI	GCNGC	5 cut(s)	19, 76, 88, 231, 305
Fsp4HI	GCNGC	5 cut(s)	19, 76, 88, 231, 305
GlaI	GCGC	4 cut(s)	22, 86, 263, 265
GluI	GCNGC	5 cut(s)	19, 76, 88, 231, 305
GsaI	CCCAGC	1 cut(s)	99
HaeII	RGCGCY	2 cut(s)	24, 88
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	1 cut(s)	125
HhaI	GCGC	4 cut(s)	23, 87, 264, 266
Hin1I	GRCGYC	2 cut(s)	21, 85
Hin1II	CATG	5 cut(s)	115, 124, 254, 261, 311
Hin6I	GCGC	4 cut(s)	21, 85, 262, 264
HinP1I	GCGC	4 cut(s)	21, 85, 262, 264
HinfI	GANTC	2 cut(s)	108, 156
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	2 cut(s)	74, 308
Hpy188I	TCNGA	3 cut(s)	59, 132, 222
Hpy188III	TCNNGA	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	2 cut(s)	68, 142
HpyCH4V	TGCA	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 263
HpyF3I	CTNAG	3 cut(s)	102, 221, 312
Hsp92I	GRCGYC	2 cut(s)	21, 85
Hsp92II	CATG	5 cut(s)	115, 124, 254, 261, 311
HspAI	GCGC	4 cut(s)	21, 85, 262, 264
KasI	GGCGCC	2 cut(s)	20, 84
Kzo9I	GATC	1 cut(s)	117
LpnPI	CCDG	5 cut(s)	37, 81, 114, 138, 277
LweI	GCATC	1 cut(s)	82
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	2 cut(s)	127, 156
MluCI	AATT	2 cut(s)	181, 275
Mly113I	GGCGCC	2 cut(s)	21, 85
MlyI	GAGTC	1 cut(s)	150
MnlI	CCTC	8 cut(s)	5, 8, 32, 53, 146, 220, 235, 247
MspI	CCGG	1 cut(s)	125
MvnI	CGCG	3 cut(s)	75, 90, 264
MwoI	GCNNNNNNNGC	2 cut(s)	84, 263
NarI	GGCGCC	2 cut(s)	21, 85
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	5 cut(s)	115, 124, 254, 261, 311
NlaIV	GGNNCC	2 cut(s)	22, 86
NmuCI	GTSAC	1 cut(s)	62
NspI	RCATGY	1 cut(s)	311
PaeI	GCATGC	1 cut(s)	311
PagI	TCATGA	1 cut(s)	111
PauI	GCGCGC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	5 cut(s)	20, 77, 89, 232, 306
PleI	GAGTC	1 cut(s)	150
PluTI	GGCGCC	2 cut(s)	24, 88
PpsI	GAGTC	1 cut(s)	150
PshAI	GACNNNNGTC	1 cut(s)	69
PspEI	GGTNACC	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	95
PspN4I	GGNNCC	2 cut(s)	22, 86
PspPI	GGNCC	1 cut(s)	98
PteI	GCGCGC	1 cut(s)	262
SatI	GCNGC	5 cut(s)	19, 76, 88, 231, 305
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	1 cut(s)	150
SetI	ASST	2 cut(s)	56, 64
SfaNI	GCATC	1 cut(s)	82
SfoI	GGCGCC	2 cut(s)	22, 86
SphI	GCATGC	1 cut(s)	311
Sse9I	AATT	2 cut(s)	181, 275
SsiI	CCGC	5 cut(s)	18, 75, 78, 88, 230
SspDI	GGCGCC	2 cut(s)	20, 84
TaaI	ACNGT	2 cut(s)	68, 142
TasI	AATT	2 cut(s)	181, 275
TauI	GCSGC	4 cut(s)	21, 78, 90, 233
TfiI	GAWTC	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	128
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.