Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7979696.1

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 513

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7979696.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atcaaataatggcatcgccagcttggttaccgcaggatgtgcagccatctgtatctcaagcccccgtttctggttcaccagcaggggctccttcaactccggctgcagctccacttgcttcaagtgcgggcacaccgtcattctcatacagtgtgcctccaaatgcaaatatcacttttggaacctctcagcagccatcaactagtcctgggactaagtttaatctctcagcatctccaatggttattcaacccccagttcctggcttgtcatctgctgccagtccctctttctcatacaacattccaaaatctaattatcccttccctaataatcagctgtttcaatctggca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0001085 GO:0001103 GO:0003674 GO:0003712 GO:0003713 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 ko04212 map03040 map04212

Pfam Domains

Protein Families

FF WW

Protein Analysis

117

Amino Acids

11.82

Weight (kDa)

8.38

Isoelectric Point (pI)

89.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	262
AciI	CCGC	2 cut(s)	31, 127
AfiI	CCNNNNNNNGG	2 cut(s)	70, 262
AgsI	TTSAA	4 cut(s)	95, 122, 250, 346
AhlI	ACTAGT	1 cut(s)	202
AjnI	CCWGG	2 cut(s)	207, 261
AluBI	AGCT	3 cut(s)	22, 109, 339
AluI	AGCT	3 cut(s)	22, 109, 339
AlwNI	CAGNNNCTG	1 cut(s)	262
ApeKI	GCWGC	5 cut(s)	42, 103, 106, 192, 277
AsuHPI	GGTGA	1 cut(s)	68
BaeGI	GKGCMC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	90
BbvI	GCAGC	5 cut(s)	54, 90, 118, 204, 264
BccI	CCATC	2 cut(s)	54, 204
BciT130I	CCWGG	2 cut(s)	209, 263
BcuI	ACTAGT	1 cut(s)	202
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	104
BisI	GCNGC	5 cut(s)	43, 104, 107, 193, 278
BlsI	GCNGC	5 cut(s)	44, 105, 108, 194, 279
Bme1390I	CCNGG	2 cut(s)	209, 263
BmiI	GGNNCC	2 cut(s)	89, 183
BmrFI	CCNGG	2 cut(s)	209, 263
BmrI	ACTGGG	1 cut(s)	250
BmsI	GCATC	2 cut(s)	22, 241
BmuI	ACTGGG	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 262
Bse1I	ACTGG	2 cut(s)	256, 281
BseBI	CCWGG	2 cut(s)	209, 263
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	2 cut(s)	70, 262
BseMII	CTCAG	2 cut(s)	202, 242
BseNI	ACTGG	2 cut(s)	256, 281
BseSI	GKGCMC	1 cut(s)	133
BseXI	GCAGC	5 cut(s)	54, 90, 118, 204, 264
BsgI	GTGCAG	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	100
BslFI	GGGAC	2 cut(s)	225, 269
BslI	CCNNNNNNNGG	2 cut(s)	70, 262
BsmFI	GGGAC	2 cut(s)	225, 269
Bsp1286I	GDGCHC	2 cut(s)	90, 133
BspACI	CCGC	2 cut(s)	31, 127
BspCNI	CTCAG	2 cut(s)	201, 241
BspLI	GGNNCC	2 cut(s)	89, 183
BspMAI	CTGCAG	1 cut(s)	108
BsrI	ACTGG	2 cut(s)	256, 281
BssECI	CCNNGG	1 cut(s)	208
Bst2UI	CCWGG	2 cut(s)	209, 263
Bst4CI	ACNGT	2 cut(s)	137, 151
BstAPI	GCANNNNNTGC	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	20, 129
BstDEI	CTNAG	3 cut(s)	188, 215, 228
BstEII	GGTNACC	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 39, 115, 124
BstNI	CCWGG	2 cut(s)	209, 263
BstPI	GGTNACC	1 cut(s)	26
BstSCI	CCNGG	2 cut(s)	207, 261
BstSFI	CTRYAG	1 cut(s)	104
BstSLI	GKGCMC	1 cut(s)	133
BstV1I	GCAGC	5 cut(s)	54, 90, 118, 204, 264
BtsCI	GGATG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	2 cut(s)	20, 129
CaiI	CAGNNNCTG	1 cut(s)	262
CviJI	RGCY	9 cut(s)	22, 45, 61, 88, 103, 109, 195, 266, 339
CviKI_1	RGCY	9 cut(s)	22, 45, 61, 88, 103, 109, 195, 266, 339
DdeI	CTNAG	3 cut(s)	188, 215, 228
Eco24I	GRGCYC	1 cut(s)	90
Eco91I	GGTNACC	1 cut(s)	26
EcoO65I	GGTNACC	1 cut(s)	26
EcoRII	CCWGG	2 cut(s)	207, 261
EcoT38I	GRGCYC	1 cut(s)	90
FaiI	YATR	2 cut(s)	147, 297
FaqI	GGGAC	2 cut(s)	225, 269
FauI	CCCGC	1 cut(s)	120
Fnu4HI	GCNGC	5 cut(s)	43, 104, 107, 193, 278
FokI	GGATG	1 cut(s)	49
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	5 cut(s)	43, 104, 107, 193, 278
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	5 cut(s)	43, 104, 107, 193, 278
HapII	CCGG	1 cut(s)	100
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	76
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	2 cut(s)	101, 333
HpyCH4III	ACNGT	2 cut(s)	137, 151
HpyCH4V	TGCA	3 cut(s)	42, 106, 166
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 39, 115, 124
HpyF3I	CTNAG	3 cut(s)	188, 215, 228
LmnI	GCTCC	2 cut(s)	93, 114
Lsp1109I	GCAGC	5 cut(s)	54, 90, 118, 204, 264
LweI	GCATC	2 cut(s)	22, 241
MaeI	CTAG	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	26
MhlI	GDGCHC	2 cut(s)	90, 133
MluCI	AATT	1 cut(s)	315
MnlI	CCTC	3 cut(s)	167, 195, 297
MseI	TTAA	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	339
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	2 cut(s)	209, 263
MvaI	CCWGG	2 cut(s)	209, 263
MwoI	GCNNNNNNNGC	4 cut(s)	19, 39, 115, 124
NlaIV	GGNNCC	2 cut(s)	89, 183
PflMI	CCANNNNNTGG	1 cut(s)	262
PkrI	GCNGC	5 cut(s)	44, 105, 108, 194, 279
Psp6I	CCWGG	2 cut(s)	207, 261
PspEI	GGTNACC	1 cut(s)	26
PspGI	CCWGG	2 cut(s)	207, 261
PspN4I	GGNNCC	2 cut(s)	89, 183
PstI	CTGCAG	1 cut(s)	108
PstNI	CAGNNNCTG	1 cut(s)	262
PvuII	CAGCTG	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	5 cut(s)	43, 104, 107, 193, 278
ScrFI	CCNGG	2 cut(s)	209, 263
SduI	GDGCHC	2 cut(s)	90, 133
SetI	ASST	4 cut(s)	24, 111, 187, 341
SfaNI	GCATC	2 cut(s)	22, 241
SfcI	CTRYAG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
SpeI	ACTAGT	1 cut(s)	202
Sse9I	AATT	1 cut(s)	315
SsiI	CCGC	2 cut(s)	31, 127
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	2 cut(s)	207, 261
TaaI	ACNGT	2 cut(s)	137, 151
TasI	AATT	1 cut(s)	315
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	5 cut(s)	42, 103, 106, 192, 277
TspRI	CASTG	1 cut(s)	156
Van91I	CCANNNNNTGG	1 cut(s)	262
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.