Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Reverse (-)

88692526 .. 88697900

Gene Structure 5375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG556800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGTCGATCTTCCAGTGCCACTGGAGCATCTCCACTGGTTGTACATGTCCAGCTTAGAAATCAATGGCTTCTTCGTCCTTGAGACCTTCGTCGACGACAACGACAGCGGCCGCGGCGAACAATGGCGGAGCTGGAAGTTCCAAGAGGCAACAACTCCATCCTGCTCGGTAAACGACGTCGTCTGTTTGATCCAAGCTGGCGTCTTCCTCAACTTCATGGTTGAAAGAGGAGGCGGCGCTGATGTTGAGCGTGGAGGCTTCTGCCACAGGTTCGGAGGTGACCGTGGTCGCGGCGGTAGACTCCACGGTGCTGGGCCTGAGAGAATCATGAAGATCATGCCGGTTCAGAAGCAAACCGTTTTGACGAGGAACCTGCTTCGCATTGCTATATTCAATATCACTGGGTATGATATTGATGCATTTTCTGCTCACTTCCTCAATTCCTCTATCTCGGCCATGTTCCGCAACCCCCGTTGGCCATCCCACAAGGTCTTCAACAAGATGTCCTGGACCGACTTTGATTACTGCAAAATCCCGCCAGTTGTGTTGATAAATTTCTATTGGTTCTTTGATGATAACTTGAATATATATCTGAGTGAGGCGGCTATCAAGGAGGAAAGACATGAGGCACGGTTCTGTATTGATTTGAGTAGTTCTTTCGGAAATCTAGTCGCAAATGAGGTGTCATTTGCGCATAGGATCATCAATGGGTGCCAAAAGGATGTCCCAGTGGCGCTTATAAGCTTTCACAATTGTAGCCTTGATGCCAAAATCAAGACCAACCTGGAGGCTCAAGTCGTGGAAAAGCCCAGTGAAGTGACTAAGAAGCCTCCCACAGAAATAGGAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

283

Amino Acids

32.07

Weight (kDa)

6.14

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	740
AatII	GACGTC	1 cut(s)	180
Acc16I	TGCGCA	1 cut(s)	693
Acc36I	ACCTGC	1 cut(s)	381
AccB1I	GGYRCC	1 cut(s)	711
AccI	GTMKAC	2 cut(s)	93, 298
AccII	CGCG	2 cut(s)	114, 291
AclWI	GGATC	2 cut(s)	184, 707
AcoI	YGGCCR	3 cut(s)	109, 453, 476
AcsI	RAATTY	2 cut(s)	553, 846
AcyI	GRCGYC	2 cut(s)	177, 201
AfaI	GTAC	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	4 cut(s)	224, 394, 496, 583
AjnI	CCWGG	2 cut(s)	506, 783
AluBI	AGCT	4 cut(s)	54, 132, 197, 744
AluI	AGCT	4 cut(s)	54, 132, 197, 744
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	2 cut(s)	184, 707
AoxI	GGCC	4 cut(s)	109, 314, 453, 476
ApoI	RAATTY	2 cut(s)	553, 846
ArsI	GACNNNNNNTTYG	2 cut(s)	668, 700
AspLEI	GCGC	3 cut(s)	239, 694, 736
AspS9I	GGNCC	2 cut(s)	314, 510
AsuHPI	GGTGA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	510
BalI	TGGCCA	1 cut(s)	478
BanI	GGYRCC	1 cut(s)	711
BbsI	GAAGAC	2 cut(s)	196, 484
BccI	CCATC	2 cut(s)	166, 487
BcgI	CGANNNNNNTGC	2 cut(s)	355, 389
BciT130I	CCWGG	2 cut(s)	508, 785
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	668
BfoI	RGCGCY	2 cut(s)	240, 737
BfuAI	ACCTGC	1 cut(s)	381
BisI	GCNGC	6 cut(s)	109, 112, 115, 235, 292, 603
BlsI	GCNGC	6 cut(s)	110, 113, 116, 236, 293, 604
Bme1390I	CCNGG	2 cut(s)	508, 785
Bme18I	GGWCC	1 cut(s)	510
BmgT120I	GGNCC	2 cut(s)	314, 510
BmiI	GGNNCC	2 cut(s)	371, 713
BmrFI	CCNGG	2 cut(s)	508, 785
BmrI	ACTGGG	3 cut(s)	411, 722, 804
BmsI	GCATC	3 cut(s)	37, 406, 754
BmuI	ACTGGG	3 cut(s)	411, 722, 804
BoxI	GACNNNNGTC	2 cut(s)	89, 285
BpiI	GAAGAC	2 cut(s)	196, 484
BpmI	CTGGAG	2 cut(s)	44, 806
BpuEI	CTTGAG	2 cut(s)	101, 777
BsaHI	GRCGYC	2 cut(s)	177, 201
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	3 cut(s)	112, 283, 304
Bse118I	RCCGGY	1 cut(s)	340
Bse1I	ACTGG	7 cut(s)	14, 27, 41, 406, 539, 728, 810
Bse3DI	GCAATG	1 cut(s)	381
BseBI	CCWGG	2 cut(s)	508, 785
BseDI	CCNNGG	3 cut(s)	112, 283, 304
BseGI	GGATG	3 cut(s)	158, 479, 727
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	2 cut(s)	309, 584
BseNI	ACTGG	7 cut(s)	14, 27, 41, 406, 539, 728, 810
BseRI	GAGGAG	1 cut(s)	243
BseX3I	CGGCCG	1 cut(s)	109
BseYI	CCCAGC	1 cut(s)	311
Bsh1236I	CGCG	2 cut(s)	114, 291
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	4 cut(s)	111, 316, 455, 478
BshNI	GGYRCC	1 cut(s)	711
BsiEI	CGRYCG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	341
BslFI	GGGAC	1 cut(s)	710
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	710
BsnI	GGCC	4 cut(s)	111, 316, 455, 478
Bso31I	GGTCTC	1 cut(s)	77
Bsp1407I	TGTACA	1 cut(s)	42
Bsp143I	GATC	4 cut(s)	7, 189, 333, 699
BspANI	GGCC	4 cut(s)	111, 316, 455, 478
BspCNI	CTCAG	2 cut(s)	310, 585
BspFNI	CGCG	2 cut(s)	114, 291
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	371, 713
BspMI	ACCTGC	1 cut(s)	381
BspPI	GGATC	2 cut(s)	184, 707
BspT107I	GGYRCC	1 cut(s)	711
BspTNI	GGTCTC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	381
BsrFI	RCCGGY	1 cut(s)	340
BsrGI	TGTACA	1 cut(s)	42
BsrI	ACTGG	7 cut(s)	14, 27, 41, 406, 539, 728, 810
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	3 cut(s)	112, 283, 304
BssMI	GATC	4 cut(s)	7, 189, 333, 699
BssNI	GRCGYC	2 cut(s)	177, 201
Bst2UI	CCWGG	2 cut(s)	508, 785
Bst4CI	ACNGT	4 cut(s)	284, 308, 358, 633
BstACI	GRCGYC	2 cut(s)	177, 201
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstAUI	TGTACA	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	4 cut(s)	55, 318, 593, 822
BstDSI	CCRYGG	3 cut(s)	112, 283, 304
BstEII	GGTNACC	1 cut(s)	278
BstF5I	GGATG	3 cut(s)	158, 479, 727
BstFNI	CGCG	2 cut(s)	114, 291
BstH2I	RGCGCY	2 cut(s)	240, 737
BstHHI	GCGC	3 cut(s)	239, 694, 736
BstKTI	GATC	4 cut(s)	10, 192, 336, 702
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	4 cut(s)	7, 189, 333, 699
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 114, 425
BstNI	CCWGG	2 cut(s)	508, 785
BstNSI	RCATGY	1 cut(s)	49
BstPAI	GACNNNNGTC	2 cut(s)	89, 285
BstPI	GGTNACC	1 cut(s)	278
BstSCI	CCNGG	2 cut(s)	506, 783
BstUI	CGCG	2 cut(s)	114, 291
BstV2I	GAAGAC	2 cut(s)	196, 484
BstXI	CCANNNNNNTGG	1 cut(s)	311
BstZI	CGGCCG	1 cut(s)	109
BsuRI	GGCC	4 cut(s)	111, 316, 455, 478
BtgI	CCRYGG	3 cut(s)	112, 283, 304
BtsCI	GGATG	3 cut(s)	158, 479, 727
BtsIMutI	CAGTG	6 cut(s)	20, 21, 34, 399, 735, 817
BveI	ACCTGC	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	199
CciI	TCATGA	1 cut(s)	327
CciNI	GCGGCCGC	1 cut(s)	109
CfoI	GCGC	3 cut(s)	239, 694, 736
Cfr10I	RCCGGY	1 cut(s)	340
Cfr13I	GGNCC	2 cut(s)	314, 510
Cfr42I	CCGCGG	1 cut(s)	115
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	6 cut(s)	46, 217, 328, 337, 457, 623
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	4 cut(s)	55, 318, 593, 822
DpnI	GATC	4 cut(s)	9, 191, 335, 701
DpnII	GATC	4 cut(s)	7, 189, 333, 699
EaeI	YGGCCR	3 cut(s)	109, 453, 476
EagI	CGGCCG	1 cut(s)	109
EciI	GGCGGA	1 cut(s)	142
EclXI	CGGCCG	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	510
Eco52I	CGGCCG	1 cut(s)	109
Eco91I	GGTNACC	1 cut(s)	278
EcoO65I	GGTNACC	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	506, 783
EcoT22I	ATGCAT	1 cut(s)	421
FaeI	CATG	6 cut(s)	49, 220, 331, 340, 460, 626
FaqI	GGGAC	1 cut(s)	710
FatI	CATG	6 cut(s)	45, 216, 327, 336, 456, 622
FauI	CCCGC	1 cut(s)	543
FblI	GTMKAC	2 cut(s)	93, 298
Fnu4HI	GCNGC	6 cut(s)	109, 112, 115, 235, 292, 603
FokI	GGATG	3 cut(s)	145, 466, 734
Fsp4HI	GCNGC	6 cut(s)	109, 112, 115, 235, 292, 603
FspBI	CTAG	1 cut(s)	668
FspI	TGCGCA	1 cut(s)	693
GlaI	GCGC	3 cut(s)	238, 693, 735
GluI	GCNGC	6 cut(s)	109, 112, 115, 235, 292, 603
GsaI	CCCAGC	1 cut(s)	315
GsuI	CTGGAG	2 cut(s)	44, 806
HaeII	RGCGCY	2 cut(s)	240, 737
HaeIII	GGCC	4 cut(s)	111, 316, 455, 478
HapII	CCGG	1 cut(s)	341
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	3 cut(s)	239, 694, 736
Hin1I	GRCGYC	2 cut(s)	177, 201
Hin1II	CATG	6 cut(s)	49, 220, 331, 340, 460, 626
Hin6I	GCGC	3 cut(s)	237, 692, 734
HinP1I	GCGC	3 cut(s)	237, 692, 734
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	742
HinfI	GANTC	2 cut(s)	300, 324
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	3 cut(s)	94, 172, 299
Hpy188I	TCNGA	4 cut(s)	275, 348, 594, 662
Hpy188III	TCNNGA	2 cut(s)	328, 775
Hpy8I	GTNNAC	3 cut(s)	94, 172, 299
Hpy99I	CGWCG	4 cut(s)	95, 98, 179, 182
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	4 cut(s)	284, 308, 358, 633
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	2 cut(s)	419, 528
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 114, 425
HpyF3I	CTNAG	4 cut(s)	55, 318, 593, 822
HpySE526I	ACGT	1 cut(s)	177
Hsp92I	GRCGYC	2 cut(s)	177, 201
Hsp92II	CATG	6 cut(s)	49, 220, 331, 340, 460, 626
HspAI	GCGC	3 cut(s)	237, 692, 734
KspI	CCGCGG	1 cut(s)	115
Kzo9I	GATC	4 cut(s)	7, 189, 333, 699
LmnI	GCTCC	2 cut(s)	25, 129
LweI	GCATC	3 cut(s)	37, 406, 754
MaeI	CTAG	1 cut(s)	668
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	2 cut(s)	278, 817
MalI	GATC	4 cut(s)	9, 191, 335, 701
MboI	GATC	4 cut(s)	7, 189, 333, 699
MboII	GAAGA	4 cut(s)	64, 196, 343, 484
MfeI	CAATTG	1 cut(s)	751
MlsI	TGGCCA	1 cut(s)	478
MluCI	AATT	4 cut(s)	439, 553, 751, 846
MluNI	TGGCCA	1 cut(s)	478
MlyI	GAGTC	1 cut(s)	294
Mox20I	TGGCCA	1 cut(s)	478
Mph1103I	ATGCAT	1 cut(s)	421
MscI	TGGCCA	1 cut(s)	478
Msp20I	TGGCCA	1 cut(s)	478
MspA1I	CMGCKG	2 cut(s)	108, 114
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	2 cut(s)	508, 785
MunI	CAATTG	1 cut(s)	751
MvaI	CCWGG	2 cut(s)	508, 785
MvnI	CGCG	2 cut(s)	114, 291
MwoI	GCNNNNNNNGC	3 cut(s)	25, 114, 425
NdeII	GATC	4 cut(s)	7, 189, 333, 699
NlaIII	CATG	6 cut(s)	49, 220, 331, 340, 460, 626
NlaIV	GGNNCC	2 cut(s)	371, 713
NmeAIII	GCCGAG	1 cut(s)	431
NmuCI	GTSAC	2 cut(s)	278, 817
NotI	GCGGCCGC	1 cut(s)	109
NsbI	TGCGCA	1 cut(s)	693
NsiI	ATGCAT	1 cut(s)	421
NspI	RCATGY	1 cut(s)	49
PagI	TCATGA	1 cut(s)	327
PciI	ACATGT	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	324
PflFI	GACNNNGTC	1 cut(s)	179
PfoI	TCCNGGA	1 cut(s)	506
PkrI	GCNGC	6 cut(s)	110, 113, 116, 236, 293, 604
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
PscI	ACATGT	1 cut(s)	45
PshAI	GACNNNNGTC	2 cut(s)	89, 285
PsiI	TTATAA	1 cut(s)	740
Psp6I	CCWGG	2 cut(s)	506, 783
PspEI	GGTNACC	1 cut(s)	278
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	2 cut(s)	506, 783
PspN4I	GGNNCC	2 cut(s)	371, 713
PspPI	GGNCC	2 cut(s)	314, 510
PsyI	GACNNNGTC	1 cut(s)	179
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SacII	CCGCGG	1 cut(s)	115
SalI	GTCGAC	1 cut(s)	92
SatI	GCNGC	6 cut(s)	109, 112, 115, 235, 292, 603
Sau3AI	GATC	4 cut(s)	7, 189, 333, 699
Sau96I	GGNCC	2 cut(s)	314, 510
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	2 cut(s)	508, 785
SfaNI	GCATC	3 cut(s)	37, 406, 754
Sfr303I	CCGCGG	1 cut(s)	115
SgrBI	CCGCGG	1 cut(s)	115
SgrDI	CGTCGACG	1 cut(s)	92
SinI	GGWCC	1 cut(s)	510
SmlI	CTYRAG	2 cut(s)	80, 792
SmoI	CTYRAG	2 cut(s)	80, 792
Sse9I	AATT	4 cut(s)	439, 553, 751, 846
SspMI	CTAG	1 cut(s)	668
StyD4I	CCNGG	2 cut(s)	506, 783
TaaI	ACNGT	4 cut(s)	284, 308, 358, 633
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	2 cut(s)	6, 93
TaqII	GACCGA	1 cut(s)	527
TasI	AATT	4 cut(s)	439, 553, 751, 846
TatI	WGTACW	1 cut(s)	42
TauI	GCSGC	6 cut(s)	111, 114, 117, 237, 294, 605
TfiI	GAWTC	1 cut(s)	324
TscAI	CASTG	6 cut(s)	21, 27, 41, 406, 735, 817
TseFI	GTSAC	2 cut(s)	278, 817
Tsp45I	GTSAC	2 cut(s)	278, 817
TspDTI	ATGAA	2 cut(s)	205, 344
TspRI	CASTG	6 cut(s)	21, 27, 41, 406, 735, 817
Tth111I	GACNNNGTC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	510
XapI	RAATTY	2 cut(s)	553, 846
XceI	RCATGY	1 cut(s)	49
XmiI	GTMKAC	2 cut(s)	93, 298
XspI	CTAG	1 cut(s)	668
ZraI	GACGTC	1 cut(s)	178
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.