Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Forward (+)

26972704 .. 26977206

Gene Structure 4503 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1127400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGAGGAGGGTCAATGAAATCGAACCCAACCAAGGCAAGGAAGAGAGTGGAGGCCACTGAGACTGAGGAGAACTCCTTGTCAATGTCAACAGCACCACCGCTTTCTCTCGTTCGTGGCAAGGATGGCAGTGCCTTTGCCCGATGGTTTGCTACCCTAAACCCCTCCCCATCCTTTTGCTTTTCTCCTTTATCGTACTCAGTGCACAAGGCTCTCGCTTTACGCAGGGTCTGGGAGAGCGATGAGTGCAACAAGGACGTGCCAGTGGCACTCATCACCATGCACAGCTGTAGCCTCGATGCCAAAATCAAGCTCAATCTCAAGGCTCAAGTTGTGGAAAGGCCCCCTGAAGTGAAAAAGAAGCCTCCCACTGAGACTCAGAGAAAGAAGTTCACTACCGCCACATCACAACCAAAGATGTCAAAGAGAGCCAAGAAGGACAAAGATCCAAATGCACCCAAGCGCCCTCTCACTGCCTTCTTCCTCTTCCTGGATGATTTCAGAAAATCCTACAAGGAAGCTAATCCTGATTCCAAAGGTGTTAAGATGGTATATAGTGTCATCAACTTCAGCACTCCATTATTGTATAATATGCTGATGAGGAGAAGAAGCCCTATGTGGATAAAGCTGCTGAGCTTAAACAAGAGTACAAAAGAGCACTGGAGAGTGACATTGCAGGAGATGGCGATGGTGGAACAGCTGATGGGGTTTTGGAGAAAGAAGCTTCAGAGAAGGAAGGGGAGGAAGAAATATCTGATGGTGATGAGGAGTAGTACTAGCGTACTAGTATTAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

266

Amino Acids

30.35

Weight (kDa)

10.36

Isoelectric Point (pI)

59.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_WDHD1	PF24815	156 - 182	6.7e-06	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	101, 399
AclWI	GGATC	1 cut(s)	440
AcuI	CTGAAG	3 cut(s)	369, 553, 710
AfaI	GTAC	4 cut(s)	197, 649, 775, 783
AfiI	CCNNNNNNNGG	3 cut(s)	34, 39, 490
AhlI	ACTAGT	1 cut(s)	784
AjiI	CACGTC	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	489
AluBI	AGCT	7 cut(s)	288, 313, 521, 628, 636, 700, 724
AluI	AGCT	7 cut(s)	288, 313, 521, 628, 636, 700, 724
Alw21I	GWGCWC	2 cut(s)	207, 660
Alw26I	GTCTC	2 cut(s)	56, 368
Alw44I	GTGCAC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	440
AlwNI	CAGNNNCTG	1 cut(s)	231
AoxI	GGCC	2 cut(s)	54, 341
ApaLI	GTGCAC	1 cut(s)	203
ApeKI	GCWGC	1 cut(s)	628
AspLEI	GCGC	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	342
AsuHPI	GGTGA	2 cut(s)	268, 772
BaeGI	GKGCMC	1 cut(s)	207
Bbv12I	GWGCWC	2 cut(s)	207, 660
BbvI	GCAGC	1 cut(s)	615
BccI	CCATC	8 cut(s)	119, 138, 178, 541, 676, 682, 697, 751
BciT130I	CCWGG	1 cut(s)	491
BcoDI	GTCTC	2 cut(s)	56, 368
BcuI	ACTAGT	1 cut(s)	784
BfaI	CTAG	3 cut(s)	777, 785, 796
BfmI	CTRYAG	1 cut(s)	289
BfoI	RGCGCY	1 cut(s)	466
BisI	GCNGC	1 cut(s)	629
BlpI	GCTNAGC	1 cut(s)	632
BlsI	GCNGC	1 cut(s)	630
BmcAI	AGTACT	1 cut(s)	775
Bme1390I	CCNGG	1 cut(s)	491
BmgBI	CACGTC	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	342
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	1 cut(s)	491
BmsI	GCATC	1 cut(s)	289
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
BpmI	CTGGAG	1 cut(s)	682
Bpu1102I	GCTNAGC	1 cut(s)	632
BpuEI	CTTGAG	2 cut(s)	305, 312
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 39, 490
Bse1I	ACTGG	2 cut(s)	263, 665
Bse3DI	GCAATG	1 cut(s)	671
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	3 cut(s)	130, 170, 499
BseLI	CCNNNNNNNGG	3 cut(s)	34, 39, 490
BseMI	GCAATG	1 cut(s)	671
BseMII	CTCAG	6 cut(s)	51, 57, 213, 363, 392, 623
BseNI	ACTGG	2 cut(s)	263, 665
BseRI	GAGGAG	4 cut(s)	21, 83, 616, 781
BseSI	GKGCMC	1 cut(s)	207
BseXI	GCAGC	1 cut(s)	615
BshFI	GGCC	2 cut(s)	56, 343
BsiHKAI	GWGCWC	2 cut(s)	207, 660
BslI	CCNNNNNNNGG	3 cut(s)	34, 39, 490
BsmAI	GTCTC	2 cut(s)	56, 368
BsnI	GGCC	2 cut(s)	56, 343
Bsp1286I	GDGCHC	2 cut(s)	207, 660
Bsp143I	GATC	1 cut(s)	445
Bsp1720I	GCTNAGC	1 cut(s)	632
BspACI	CCGC	2 cut(s)	101, 399
BspANI	GGCC	2 cut(s)	56, 343
BspCNI	CTCAG	6 cut(s)	52, 58, 212, 364, 391, 624
BspLI	GGNNCC	1 cut(s)	344
BspPI	GGATC	1 cut(s)	440
BsrDI	GCAATG	1 cut(s)	671
BsrI	ACTGG	2 cut(s)	263, 665
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	1 cut(s)	445
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	491
Bst6I	CTCTTC	2 cut(s)	38, 491
BstDEI	CTNAG	6 cut(s)	60, 66, 199, 372, 378, 632
BstF5I	GGATG	3 cut(s)	130, 170, 499
BstH2I	RGCGCY	1 cut(s)	466
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	1 cut(s)	448
BstMAI	GTCTC	2 cut(s)	56, 368
BstMBI	GATC	1 cut(s)	445
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 246
BstNI	CCWGG	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	489
BstSFI	CTRYAG	1 cut(s)	289
BstSLI	GKGCMC	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	615
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	56, 343
BtgZI	GCGATG	2 cut(s)	255, 701
BtrI	CACGTC	1 cut(s)	259
BtsCI	GGATG	3 cut(s)	130, 170, 499
BtsI	GCAGTG	2 cut(s)	136, 471
BtsIMutI	CAGTG	7 cut(s)	57, 136, 207, 270, 369, 471, 658
CaiI	CAGNNNCTG	1 cut(s)	231
CfoI	GCGC	1 cut(s)	465
Cfr13I	GGNCC	1 cut(s)	342
Csp6I	GTAC	4 cut(s)	196, 648, 774, 782
CviAII	CATG	1 cut(s)	280
CviQI	GTAC	4 cut(s)	196, 648, 774, 782
DdeI	CTNAG	6 cut(s)	60, 66, 199, 372, 378, 632
DpnI	GATC	1 cut(s)	447
DpnII	GATC	1 cut(s)	445
Eam1104I	CTCTTC	2 cut(s)	38, 491
EarI	CTCTTC	2 cut(s)	38, 491
Eco130I	CCWWGG	1 cut(s)	33
Eco57I	CTGAAG	3 cut(s)	369, 553, 710
EcoO109I	RGGNCCY	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	1 cut(s)	283
FaiI	YATR	6 cut(s)	281, 553, 555, 588, 593, 617
FatI	CATG	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	629
FokI	GGATG	3 cut(s)	137, 157, 506
Fsp4HI	GCNGC	1 cut(s)	629
FspBI	CTAG	3 cut(s)	777, 785, 796
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	1 cut(s)	629
GsuI	CTGGAG	1 cut(s)	682
HaeII	RGCGCY	1 cut(s)	466
HaeIII	GGCC	2 cut(s)	56, 343
HhaI	GCGC	1 cut(s)	465
Hin1II	CATG	1 cut(s)	283
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	2 cut(s)	376, 530
HphI	GGTGA	2 cut(s)	268, 772
Hpy166II	GTNNAC	3 cut(s)	90, 205, 393
Hpy188I	TCNGA	4 cut(s)	381, 503, 729, 756
Hpy188III	TCNNGA	1 cut(s)	527
Hpy8I	GTNNAC	3 cut(s)	90, 205, 393
HpyAV	CCTTC	4 cut(s)	430, 487, 726, 730
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	5 cut(s)	205, 249, 283, 455, 676
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 246
HpyF3I	CTNAG	6 cut(s)	60, 66, 199, 372, 378, 632
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	1 cut(s)	283
HspAI	GCGC	1 cut(s)	463
Kzo9I	GATC	1 cut(s)	445
LpnPI	CCDG	9 cut(s)	211, 217, 276, 360, 476, 503, 540, 646, 662
Lsp1109I	GCAGC	1 cut(s)	615
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	3 cut(s)	777, 785, 796
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	667
MalI	GATC	1 cut(s)	447
MboI	GATC	1 cut(s)	445
MboII	GAAGA	5 cut(s)	55, 472, 478, 618, 757
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	2 cut(s)	207, 660
MlyI	GAGTC	1 cut(s)	370
MseI	TTAA	2 cut(s)	543, 638
MslI	CAYNNNNRTG	1 cut(s)	278
MspA1I	CMGCKG	2 cut(s)	288, 700
MspR9I	CCNGG	1 cut(s)	491
MvaI	CCWGG	1 cut(s)	491
MwoI	GCNNNNNNNGC	2 cut(s)	126, 246
NdeII	GATC	1 cut(s)	445
NlaIII	CATG	1 cut(s)	283
NlaIV	GGNNCC	1 cut(s)	344
NmuCI	GTSAC	1 cut(s)	667
PfeI	GAWTC	1 cut(s)	530
PfoI	TCCNGGA	1 cut(s)	489
PkrI	GCNGC	1 cut(s)	630
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	1 cut(s)	342
PstNI	CAGNNNCTG	1 cut(s)	231
PsuI	RGATCY	1 cut(s)	445
PvuII	CAGCTG	2 cut(s)	288, 700
RsaI	GTAC	4 cut(s)	197, 649, 775, 783
RsaNI	GTAC	4 cut(s)	196, 648, 774, 782
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	2 cut(s)	543, 638
SatI	GCNGC	1 cut(s)	629
Sau3AI	GATC	1 cut(s)	445
Sau96I	GGNCC	1 cut(s)	342
ScaI	AGTACT	1 cut(s)	775
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	1 cut(s)	491
SduI	GDGCHC	2 cut(s)	207, 660
SetI	ASST	9 cut(s)	261, 290, 315, 523, 541, 630, 638, 702, 726
SfaNI	GCATC	1 cut(s)	289
SfcI	CTRYAG	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	2 cut(s)	320, 327
SmoI	CTYRAG	2 cut(s)	320, 327
SpeI	ACTAGT	1 cut(s)	784
SsiI	CCGC	2 cut(s)	101, 399
SspMI	CTAG	3 cut(s)	777, 785, 796
StyD4I	CCNGG	1 cut(s)	489
StyI	CCWWGG	1 cut(s)	33
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	23, 297
TatI	WGTACW	2 cut(s)	647, 773
TfiI	GAWTC	1 cut(s)	530
Tru1I	TTAA	2 cut(s)	543, 638
Tru9I	TTAA	2 cut(s)	543, 638
TscAI	CASTG	7 cut(s)	64, 136, 207, 270, 376, 478, 665
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	1 cut(s)	628
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	1 cut(s)	32
TspRI	CASTG	7 cut(s)	64, 136, 207, 270, 376, 478, 665
VneI	GTGCAC	1 cut(s)	203
XspI	CTAG	3 cut(s)	777, 785, 796
ZrmI	AGTACT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.