Rorug02G0403700

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002801
Physical Location & Seq
Reverse (-)
51562017 .. 51562706
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0403700.1

Sequence Viewer

Length: 690 bp
ATGGCGTCCTCTCTTCACCCAAACCCGACCACCTTCCTCAAACCCGTACCCAGACCTTTCACAACCACGCCCGCCCCCGCCGTAGTCCGCGTTCCCGTACGGTGCGGCCCACGCGACAAGCGTGGACCCTTGGTCAAAGGCCGGGTCCTCAGCATCGAGGCCATCCAAGCCGTCCAAGCCCTCAAACGGGCCCAAAGATCCGACCCGGACCCATCCCTGGTCTCCAAAACCCTCTCCCGCCTAATCAAGTCTGACCTCGTCGCCGCCCTCAAAGAGCTTCTACGGCAGGATCAGTGCCACCTGGCCCTCCAGGCCTTCTCCGCCTTCCGATCCGAATACCCACCCGACCTGTCCGTCTACGCCGAGGTGGCTTTGGCGCTCGCCAGAAATGGGATGGTGGAGGAGATAGACACCCTGGTTTGTGAGCTCGAAAAGGAGAGCGGAGGAGTCCAGTGGGACAGTGATAAGGGGCTGATAAGGTTGATCAAGGCCGTCATTGGCGCCGACCGGAGGGAATCGACGGTCAGGATTTACGAGATGCTGAAGAGGAATGGATGGGGGTCTAGTAGTTTTAAAGCGGATGAGTATATGGTTAGGGTGTTGAGCAAGGGATTGAGGAGGCTTGGTGAGGCTGAACTAGCTGATGAGGTTGATGTCAAATTTGGTCCACAGCTGTTATTTCAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

229

Amino Acids

25.34

Weight (kDa)

9.3

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 353
AccB1I GGYRCC 1 cut(s) 500
AccBSI CCGCTC 1 cut(s) 441
AccI GTMKAC 1 cut(s) 357
AccII CGCG 2 cut(s) 90, 114
AciI CCGC 9 cut(s) 72, 78, 88, 105, 238, 264, 321, 441, 578
AclWI GGATC 3 cut(s) 192, 297, 324
AcsI RAATTY 1 cut(s) 659
AcuI CTGAAG 1 cut(s) 563
AcyI GRCGYC 2 cut(s) 5, 501
AfaI GTAC 2 cut(s) 48, 99
AfiI CCNNNNNNNGG 5 cut(s) 186, 187, 217, 390, 510
AgsI TTSAA 1 cut(s) 683
AhdI GACNNNNNGTC 1 cut(s) 131
AjnI CCWGG 4 cut(s) 216, 300, 309, 414
AluBI AGCT 4 cut(s) 277, 427, 641, 673
AluI AGCT 4 cut(s) 277, 427, 641, 673
Alw21I GWGCWC 1 cut(s) 429
Alw26I GTCTC 1 cut(s) 226
AlwI GGATC 3 cut(s) 192, 297, 324
AoxI GGCC 7 cut(s) 106, 139, 159, 189, 303, 312, 489
ApaI GGGCCC 1 cut(s) 193
ApoI RAATTY 1 cut(s) 659
ArsI GACNNNNNNTTYG 2 cut(s) 129, 161
AspLEI GCGC 2 cut(s) 379, 503
AspS9I GGNCC 8 cut(s) 107, 125, 145, 189, 190, 208, 304, 665
AsuC2I CCSGG 2 cut(s) 143, 206
AsuHPI GGTGA 2 cut(s) 8, 638
AvaII GGWCC 4 cut(s) 125, 145, 208, 665
BaeGI GKGCMC 1 cut(s) 193
BanI GGYRCC 1 cut(s) 500
BanII GRGCYC 2 cut(s) 193, 429
Bbv12I GWGCWC 1 cut(s) 429
BbvCI CCTCAGC 1 cut(s) 149
BccI CCATC 4 cut(s) 170, 220, 388, 549
BceAI ACGGC 4 cut(s) 65, 155, 299, 476
BciT130I CCWGG 4 cut(s) 218, 302, 311, 416
BclI TGATCA 1 cut(s) 483
BcnI CCSGG 2 cut(s) 143, 206
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 2 cut(s) 564, 638
BfoI RGCGCY 2 cut(s) 380, 504
BglI GCCNNNNNGGC 2 cut(s) 311, 368
BisI GCNGC 2 cut(s) 106, 264
BlsI GCNGC 2 cut(s) 107, 265
Bme1390I CCNGG 6 cut(s) 143, 206, 218, 302, 311, 416
Bme18I GGWCC 4 cut(s) 125, 145, 208, 665
BmeRI GACNNNNNGTC 1 cut(s) 131
BmgT120I GGNCC 8 cut(s) 107, 125, 145, 189, 190, 208, 304, 665
BmiI GGNNCC 5 cut(s) 127, 146, 191, 210, 502
BmrFI CCNGG 6 cut(s) 143, 206, 218, 302, 311, 416
BmsI GCATC 2 cut(s) 162, 528
BpmI CTGGAG 1 cut(s) 293
Bpu10I CCTNAGC 1 cut(s) 149
BpuMI CCSGG 2 cut(s) 143, 206
BsaHI GRCGYC 2 cut(s) 5, 501
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 4 cut(s) 129, 216, 363, 414
BsaWI WCCGGW 1 cut(s) 507
BsaXI ACNNNNNCTCC 2 cut(s) 610, 640
Bsc4I CCNNNNNNNGG 5 cut(s) 186, 187, 217, 390, 510
Bse1I ACTGG 1 cut(s) 451
BseBI CCWGG 4 cut(s) 218, 302, 311, 416
BseDI CCNNGG 4 cut(s) 129, 216, 363, 414
BseGI GGATG 5 cut(s) 162, 212, 399, 560, 586
BseLI CCNNNNNNNGG 5 cut(s) 186, 187, 217, 390, 510
BseMII CTCAG 1 cut(s) 163
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 3 cut(s) 416, 459, 631
BseSI GKGCMC 1 cut(s) 193
Bsh1236I CGCG 2 cut(s) 90, 114
Bsh1285I CGRYCG 1 cut(s) 508
BshFI GGCC 7 cut(s) 108, 141, 161, 191, 305, 314, 491
BshNI GGYRCC 1 cut(s) 500
BsiEI CGRYCG 1 cut(s) 508
BsiHKAI GWGCWC 1 cut(s) 429
BsiSI CCGG 3 cut(s) 142, 206, 508
BsiWI CGTACG 1 cut(s) 97
BslFI GGGAC 1 cut(s) 470
BslI CCNNNNNNNGG 5 cut(s) 186, 187, 217, 390, 510
BsmAI GTCTC 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 470
BsnI GGCC 7 cut(s) 108, 141, 161, 191, 305, 314, 491
Bso31I GGTCTC 1 cut(s) 226
Bsp120I GGGCCC 1 cut(s) 189
Bsp1286I GDGCHC 2 cut(s) 193, 429
Bsp143I GATC 4 cut(s) 197, 289, 329, 483
BspACI CCGC 9 cut(s) 72, 78, 88, 105, 238, 264, 321, 441, 578
BspANI GGCC 7 cut(s) 108, 141, 161, 191, 305, 314, 491
BspCNI CTCAG 1 cut(s) 162
BspFNI CGCG 2 cut(s) 90, 114
BspLI GGNNCC 5 cut(s) 127, 146, 191, 210, 502
BspPI GGATC 3 cut(s) 192, 297, 324
BspT107I GGYRCC 1 cut(s) 500
BspTNI GGTCTC 1 cut(s) 226
BsrBI CCGCTC 1 cut(s) 441
BsrI ACTGG 1 cut(s) 451
BssECI CCNNGG 4 cut(s) 129, 216, 363, 414
BssMI GATC 4 cut(s) 197, 289, 329, 483
BssNI GRCGYC 2 cut(s) 5, 501
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 4 cut(s) 218, 302, 311, 416
Bst4CI ACNGT 3 cut(s) 102, 461, 523
Bst6I CTCTTC 2 cut(s) 18, 539
BstACI GRCGYC 2 cut(s) 5, 501
BstC8I GCNNGC 2 cut(s) 72, 381
BstDEI CTNAG 1 cut(s) 149
BstF5I GGATG 5 cut(s) 162, 212, 399, 560, 586
BstFNI CGCG 2 cut(s) 90, 114
BstH2I RGCGCY 2 cut(s) 380, 504
BstHHI GCGC 2 cut(s) 379, 503
BstKTI GATC 4 cut(s) 200, 292, 332, 486
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 4 cut(s) 197, 289, 329, 483
BstMCI CGRYCG 1 cut(s) 508
BstMWI GCNNNNNNNGC 8 cut(s) 111, 167, 176, 283, 311, 320, 368, 638
BstNI CCWGG 4 cut(s) 218, 302, 311, 416
BstSCI CCNGG 6 cut(s) 141, 204, 216, 300, 309, 414
BstSLI GKGCMC 1 cut(s) 193
BstUI CGCG 2 cut(s) 90, 114
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 7 cut(s) 108, 141, 161, 191, 305, 314, 491
BtsCI GGATG 5 cut(s) 162, 212, 399, 560, 586
BtsIMutI CAGTG 3 cut(s) 299, 458, 466
Cac8I GCNNGC 2 cut(s) 72, 381
CfoI GCGC 2 cut(s) 379, 503
Cfr13I GGNCC 8 cut(s) 107, 125, 145, 189, 190, 208, 304, 665
Csp6I GTAC 2 cut(s) 47, 98
CviQI GTAC 2 cut(s) 47, 98
DdeI CTNAG 1 cut(s) 149
DinI GGCGCC 1 cut(s) 502
DpnI GATC 4 cut(s) 199, 291, 331, 485
DpnII GATC 4 cut(s) 197, 289, 329, 483
DraI TTTAAA 1 cut(s) 574
DrdI GACNNNNNNGTC 1 cut(s) 353
DriI GACNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 353
Eam1104I CTCTTC 2 cut(s) 18, 539
Eam1105I GACNNNNNGTC 1 cut(s) 131
EarI CTCTTC 2 cut(s) 18, 539
EciI GGCGGA 1 cut(s) 310
Ecl136II GAGCTC 1 cut(s) 427
Eco130I CCWWGG 1 cut(s) 129
Eco147I AGGCCT 1 cut(s) 314
Eco24I GRGCYC 2 cut(s) 193, 429
Eco31I GGTCTC 1 cut(s) 226
Eco47I GGWCC 4 cut(s) 125, 145, 208, 665
Eco53kI GAGCTC 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 563
EcoICRI GAGCTC 1 cut(s) 427
EcoO109I RGGNCCY 1 cut(s) 145
EcoRII CCWGG 4 cut(s) 216, 300, 309, 414
EcoT14I CCWWGG 1 cut(s) 129
EcoT38I GRGCYC 2 cut(s) 193, 429
EgeI GGCGCC 1 cut(s) 502
EheI GGCGCC 1 cut(s) 502
ErhI CCWWGG 1 cut(s) 129
FaiI YATR 2 cut(s) 588, 590
FaqI GGGAC 1 cut(s) 470
FauI CCCGC 3 cut(s) 79, 85, 245
FbaI TGATCA 1 cut(s) 483
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 2 cut(s) 106, 264
FokI GGATG 5 cut(s) 149, 199, 406, 567, 593
FriOI GRGCYC 2 cut(s) 193, 429
Fsp4HI GCNGC 2 cut(s) 106, 264
FspBI CTAG 2 cut(s) 564, 638
GlaI GCGC 2 cut(s) 378, 502
GluI GCNGC 2 cut(s) 106, 264
GsuI CTGGAG 1 cut(s) 293
HaeII RGCGCY 2 cut(s) 380, 504
HaeIII GGCC 7 cut(s) 108, 141, 161, 191, 305, 314, 491
HapII CCGG 3 cut(s) 142, 206, 508
HhaI GCGC 2 cut(s) 379, 503
Hin1I GRCGYC 2 cut(s) 5, 501
Hin6I GCGC 2 cut(s) 377, 501
HinP1I GCGC 2 cut(s) 377, 501
HinfI GANTC 2 cut(s) 447, 515
HpaII CCGG 3 cut(s) 142, 206, 508
HphI GGTGA 2 cut(s) 8, 638
Hpy166II GTNNAC 3 cut(s) 125, 358, 668
Hpy188I TCNGA 4 cut(s) 202, 253, 329, 334
Hpy188III TCNNGA 2 cut(s) 526, 687
Hpy8I GTNNAC 3 cut(s) 125, 358, 668
Hpy99I CGWCG 2 cut(s) 263, 523
HpyAV CCTTC 3 cut(s) 43, 325, 334
HpyCH4III ACNGT 3 cut(s) 102, 461, 523
HpyF10VI GCNNNNNNNGC 8 cut(s) 111, 167, 176, 283, 311, 320, 368, 638
HpyF3I CTNAG 1 cut(s) 149
Hsp92I GRCGYC 2 cut(s) 5, 501
HspAI GCGC 2 cut(s) 377, 501
KasI GGCGCC 1 cut(s) 500
Ksp22I TGATCA 1 cut(s) 483
Kzo9I GATC 4 cut(s) 197, 289, 329, 483
LweI GCATC 2 cut(s) 162, 528
MaeI CTAG 2 cut(s) 564, 638
MalI GATC 4 cut(s) 199, 291, 331, 485
MbiI CCGCTC 1 cut(s) 441
MboI GATC 4 cut(s) 197, 289, 329, 483
MboII GAAGA 2 cut(s) 5, 556
MflI RGATCY 1 cut(s) 197
MhlI GDGCHC 2 cut(s) 193, 429
MluCI AATT 1 cut(s) 659
Mly113I GGCGCC 1 cut(s) 501
MlyI GAGTC 1 cut(s) 456
MmeI TCCRAC 1 cut(s) 225
MseI TTAA 1 cut(s) 573
MspA1I CMGCKG 1 cut(s) 673
MspI CCGG 3 cut(s) 142, 206, 508
MspR9I CCNGG 6 cut(s) 143, 206, 218, 302, 311, 416
MvaI CCWGG 4 cut(s) 218, 302, 311, 416
MvnI CGCG 2 cut(s) 90, 114
MwoI GCNNNNNNNGC 8 cut(s) 111, 167, 176, 283, 311, 320, 368, 638
NarI GGCGCC 1 cut(s) 501
NciI CCSGG 2 cut(s) 143, 206
NdeII GATC 4 cut(s) 197, 289, 329, 483
NlaIV GGNNCC 5 cut(s) 127, 146, 191, 210, 502
NmeAIII GCCGAG 1 cut(s) 388
PceI AGGCCT 1 cut(s) 314
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PfeI GAWTC 1 cut(s) 515
Pfl23II CGTACG 1 cut(s) 97
PflFI GACNNNGTC 1 cut(s) 257
PkrI GCNGC 2 cut(s) 107, 265
PleI GAGTC 1 cut(s) 455
PluTI GGCGCC 1 cut(s) 504
PpsI GAGTC 1 cut(s) 455
PpuMI RGGWCCY 1 cut(s) 145
Psp124BI GAGCTC 1 cut(s) 429
Psp5II RGGWCCY 1 cut(s) 145
Psp6I CCWGG 4 cut(s) 216, 300, 309, 414
PspGI CCWGG 4 cut(s) 216, 300, 309, 414
PspLI CGTACG 1 cut(s) 97
PspN4I GGNNCC 5 cut(s) 127, 146, 191, 210, 502
PspOMI GGGCCC 1 cut(s) 189
PspPI GGNCC 8 cut(s) 107, 125, 145, 189, 190, 208, 304, 665
PspPPI RGGWCCY 1 cut(s) 145
PsrI GAACNNNNNNTAC 2 cut(s) 75, 107
PsuI RGATCY 1 cut(s) 197
PsyI GACNNNGTC 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 673
RsaI GTAC 2 cut(s) 48, 99
RsaNI GTAC 2 cut(s) 47, 98
SacI GAGCTC 1 cut(s) 429
SaqAI TTAA 1 cut(s) 573
SatI GCNGC 2 cut(s) 106, 264
Sau3AI GATC 4 cut(s) 197, 289, 329, 483
Sau96I GGNCC 8 cut(s) 107, 125, 145, 189, 190, 208, 304, 665
SchI GAGTC 1 cut(s) 456
ScrFI CCNGG 6 cut(s) 143, 206, 218, 302, 311, 416
SduI GDGCHC 2 cut(s) 193, 429
SfaNI GCATC 2 cut(s) 162, 528
SfiI GGCCNNNNNGGCC 1 cut(s) 311
SfoI GGCGCC 1 cut(s) 502
SinI GGWCC 4 cut(s) 125, 145, 208, 665
Sse9I AATT 1 cut(s) 659
SseBI AGGCCT 1 cut(s) 314
SsiI CCGC 9 cut(s) 72, 78, 88, 105, 238, 264, 321, 441, 578
SspDI GGCGCC 1 cut(s) 500
SspMI CTAG 2 cut(s) 564, 638
SstI GAGCTC 1 cut(s) 429
StuI AGGCCT 1 cut(s) 314
StyD4I CCNGG 6 cut(s) 141, 204, 216, 300, 309, 414
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 3 cut(s) 102, 461, 523
TaqI TCGA 3 cut(s) 156, 429, 518
TasI AATT 1 cut(s) 659
TauI GCSGC 2 cut(s) 108, 266
TfiI GAWTC 1 cut(s) 515
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TscAI CASTG 3 cut(s) 299, 458, 466
TspGWI ACGGA 1 cut(s) 343
TspRI CASTG 3 cut(s) 299, 458, 466
Tth111I GACNNNGTC 1 cut(s) 257
VpaK11BI GGWCC 4 cut(s) 125, 145, 208, 665
XapI RAATTY 1 cut(s) 659
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XmiI GTMKAC 1 cut(s) 357
XspI CTAG 2 cut(s) 564, 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.