Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Reverse (-)

58677029 .. 58678283

Gene Structure 1255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019927

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTTGAAAGAGGAGGCGGCGCCGATGTTGAGCGTGGAGGCTTCTGCCACAGGTTCGGAGGTGACCGTGATCGCAGCGGTAAGCGCCGCGGTGCTGGGCCTGAGAGAATCATGAAGATCATGCCGGTTCAGAAGCAAACCATTTTGGTTGGAGGACTCGCTTCTTCTGTTCCTCTATCTCGTCCATGTTCCCCAACCCCGGTTGGCCGTCCCACAAGATCTTCAACAAGACGTCGTGGACCGACTTCGATTGCTGCAAAATACCGCCAGCTATCAAGGAGGAAAGACATGAGGCATGGCGCGCTAAAAAGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

106

Amino Acids

11.53

Weight (kDa)

11.87

Isoelectric Point (pI)

74.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	235
AccB1I	GGYRCC	1 cut(s)	20
AccII	CGCG	2 cut(s)	90, 302
AciI	CCGC	5 cut(s)	18, 78, 88, 90, 265
AcoI	YGGCCR	1 cut(s)	205
AcyI	GRCGYC	2 cut(s)	21, 232
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	2 cut(s)	8, 225
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
AoxI	GGCC	2 cut(s)	98, 205
ApeKI	GCWGC	2 cut(s)	75, 254
AspLEI	GCGC	4 cut(s)	23, 87, 302, 304
AspS9I	GGNCC	2 cut(s)	98, 239
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	239
BanI	GGYRCC	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	87, 241
BceAI	ACGGC	1 cut(s)	192
BcnI	CCSGG	1 cut(s)	200
BfoI	RGCGCY	2 cut(s)	24, 88
BglII	AGATCT	1 cut(s)	218
BisI	GCNGC	4 cut(s)	19, 76, 88, 255
BlsI	GCNGC	4 cut(s)	20, 77, 89, 256
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	2 cut(s)	98, 239
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	200
BsaHI	GRCGYC	2 cut(s)	21, 232
BsaJI	CCNNGG	2 cut(s)	88, 198
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse118I	RCCGGY	1 cut(s)	124
BseDI	CCNNGG	2 cut(s)	88, 198
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	93
BsePI	GCGCGC	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	87, 241
BseYI	CCCAGC	1 cut(s)	95
Bsh1236I	CGCG	2 cut(s)	90, 302
BshFI	GGCC	2 cut(s)	100, 207
BshNI	GGYRCC	1 cut(s)	20
BsiSI	CCGG	2 cut(s)	125, 200
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	195
BsnI	GGCC	2 cut(s)	100, 207
Bsp143I	GATC	3 cut(s)	70, 117, 218
BspACI	CCGC	5 cut(s)	18, 78, 88, 90, 265
BspANI	GGCC	2 cut(s)	100, 207
BspCNI	CTCAG	1 cut(s)	94
BspFNI	CGCG	2 cut(s)	90, 302
BspHI	TCATGA	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	20
BsrFI	RCCGGY	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	88, 198
BssHII	GCGCGC	1 cut(s)	300
BssMI	GATC	3 cut(s)	70, 117, 218
BssNI	GRCGYC	2 cut(s)	21, 232
Bst4CI	ACNGT	1 cut(s)	68
BstACI	GRCGYC	2 cut(s)	21, 232
BstC8I	GCNNGC	2 cut(s)	269, 302
BstDEI	CTNAG	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	88
BstEII	GGTNACC	1 cut(s)	62
BstFNI	CGCG	2 cut(s)	90, 302
BstH2I	RGCGCY	2 cut(s)	24, 88
BstHHI	GCGC	4 cut(s)	23, 87, 302, 304
BstKTI	GATC	3 cut(s)	73, 120, 221
BstMBI	GATC	3 cut(s)	70, 117, 218
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 301
BstPI	GGTNACC	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	198
BstUI	CGCG	2 cut(s)	90, 302
BstV1I	GCAGC	2 cut(s)	87, 241
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	100, 207
BtgI	CCRYGG	1 cut(s)	88
Cac8I	GCNNGC	2 cut(s)	269, 302
CciI	TCATGA	1 cut(s)	111
CfoI	GCGC	4 cut(s)	23, 87, 302, 304
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	98, 239
Cfr42I	CCGCGG	1 cut(s)	91
CviAII	CATG	5 cut(s)	112, 121, 186, 289, 296
CviJI	RGCY	4 cut(s)	42, 100, 207, 271
CviKI_1	RGCY	4 cut(s)	42, 100, 207, 271
DdeI	CTNAG	1 cut(s)	102
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	3 cut(s)	72, 119, 220
DpnII	GATC	3 cut(s)	70, 117, 218
EaeI	YGGCCR	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	239
Eco91I	GGTNACC	1 cut(s)	62
EcoO65I	GGTNACC	1 cut(s)	62
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
FaeI	CATG	5 cut(s)	115, 124, 189, 292, 299
FaiI	YATR	5 cut(s)	113, 122, 187, 290, 297
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	5 cut(s)	111, 120, 185, 288, 295
Fnu4HI	GCNGC	4 cut(s)	19, 76, 88, 255
Fsp4HI	GCNGC	4 cut(s)	19, 76, 88, 255
GlaI	GCGC	4 cut(s)	22, 86, 301, 303
GluI	GCNGC	4 cut(s)	19, 76, 88, 255
GsaI	CCCAGC	1 cut(s)	99
HaeII	RGCGCY	2 cut(s)	24, 88
HaeIII	GGCC	2 cut(s)	100, 207
HapII	CCGG	2 cut(s)	125, 200
HhaI	GCGC	4 cut(s)	23, 87, 302, 304
Hin1I	GRCGYC	2 cut(s)	21, 232
Hin1II	CATG	5 cut(s)	115, 124, 189, 292, 299
Hin6I	GCGC	4 cut(s)	21, 85, 300, 302
HinP1I	GCGC	4 cut(s)	21, 85, 300, 302
HinfI	GANTC	2 cut(s)	108, 156
HpaII	CCGG	2 cut(s)	125, 200
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	2 cut(s)	59, 132
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	1 cut(s)	239
Hpy99I	CGWCG	1 cut(s)	237
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 301
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	1 cut(s)	232
Hsp92I	GRCGYC	2 cut(s)	21, 232
Hsp92II	CATG	5 cut(s)	115, 124, 189, 292, 299
HspAI	GCGC	4 cut(s)	21, 85, 300, 302
KasI	GGCGCC	1 cut(s)	20
KspI	CCGCGG	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	70, 117, 218
LpnPI	CCDG	6 cut(s)	37, 81, 114, 138, 213, 281
Lsp1109I	GCAGC	2 cut(s)	87, 241
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	3 cut(s)	72, 119, 220
MboI	GATC	3 cut(s)	70, 117, 218
MboII	GAAGA	3 cut(s)	127, 156, 213
MflI	RGATCY	1 cut(s)	218
MluCI	AATT	1 cut(s)	313
Mly113I	GGCGCC	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	8 cut(s)	5, 8, 32, 53, 146, 183, 273, 285
MspA1I	CMGCKG	2 cut(s)	78, 90
MspI	CCGG	2 cut(s)	125, 200
MspR9I	CCNGG	1 cut(s)	200
MvnI	CGCG	2 cut(s)	90, 302
MwoI	GCNNNNNNNGC	2 cut(s)	84, 301
NarI	GGCGCC	1 cut(s)	21
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	3 cut(s)	70, 117, 218
NlaIII	CATG	5 cut(s)	115, 124, 189, 292, 299
NlaIV	GGNNCC	1 cut(s)	22
NmuCI	GTSAC	1 cut(s)	62
PagI	TCATGA	1 cut(s)	111
PauI	GCGCGC	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	4 cut(s)	20, 77, 89, 256
PleI	GAGTC	1 cut(s)	150
PluTI	GGCGCC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	150
PspEI	GGTNACC	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	22
PspPI	GGNCC	2 cut(s)	98, 239
PsuI	RGATCY	1 cut(s)	218
PteI	GCGCGC	1 cut(s)	300
SacII	CCGCGG	1 cut(s)	91
SatI	GCNGC	4 cut(s)	19, 76, 88, 255
Sau3AI	GATC	3 cut(s)	70, 117, 218
Sau96I	GGNCC	2 cut(s)	98, 239
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	1 cut(s)	200
SetI	ASST	4 cut(s)	56, 64, 235, 273
SfoI	GGCGCC	1 cut(s)	22
Sfr303I	CCGCGG	1 cut(s)	91
SgrBI	CCGCGG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	239
Sse9I	AATT	1 cut(s)	313
SsiI	CCGC	5 cut(s)	18, 78, 88, 90, 265
SspDI	GGCGCC	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	68
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	1 cut(s)	248
TaqII	GACCGA	1 cut(s)	256
TasI	AATT	1 cut(s)	313
TauI	GCSGC	2 cut(s)	21, 90
TfiI	GAWTC	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	2 cut(s)	75, 254
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	239
ZraI	GACGTC	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.