Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Reverse (-)

30636213 .. 30637687

Gene Structure 1475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG280600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGTTGAAAAAGGAGGTGGCGCCGATGTTGAGCGTGGAGGCTTCTGCCACAGGTTCGGAGGTGACCATGGTCGCGGCGGTAGGCGCCGCGATGCTGGGCCTGAGAGAATCATGAAGATCATGCCGGTTCAGAAGCAAACCGTTTTGGTTAGAGGACTTGCTTCTTCTGCATGCTTAGAGAGTAGATTCTTAATGAGCAATGGGGGCCAAAAGGATGTCCCAGTGGCGCTTATTAGCTTTCACAATTGTAGCCTTGATGCCAAAATCAAGACCAACCTGGCATGGGTGGATTTGTTGTGTGTTTCTCAATTCAATTTGGCTCTAACTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

110

Amino Acids

11.91

Weight (kDa)

9.38

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	20, 84
AccII	CGCG	2 cut(s)	75, 90
AciI	CCGC	3 cut(s)	75, 78, 88
AcyI	GRCGYC	2 cut(s)	21, 85
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	2 cut(s)	8, 313
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	1 cut(s)	237
AluI	AGCT	1 cut(s)	237
AoxI	GGCC	2 cut(s)	98, 205
AspLEI	GCGC	3 cut(s)	23, 87, 229
AspS9I	GGNCC	2 cut(s)	98, 205
AsuHPI	GGTGA	1 cut(s)	74
BanI	GGYRCC	2 cut(s)	20, 84
BciT130I	CCWGG	1 cut(s)	278
BfoI	RGCGCY	3 cut(s)	24, 88, 230
BisI	GCNGC	2 cut(s)	76, 88
BlsI	GCNGC	2 cut(s)	77, 89
Bme1390I	CCNGG	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	98, 205
BmiI	GGNNCC	3 cut(s)	22, 86, 206
BmrFI	CCNGG	1 cut(s)	278
BmrI	ACTGGG	1 cut(s)	215
BmsI	GCATC	2 cut(s)	82, 247
BmuI	ACTGGG	1 cut(s)	215
BoxI	GACNNNNGTC	1 cut(s)	69
BsaHI	GRCGYC	2 cut(s)	21, 85
BsaJI	CCNNGG	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	221
BseYI	CCCAGC	1 cut(s)	95
Bsh1236I	CGCG	2 cut(s)	75, 90
BshFI	GGCC	2 cut(s)	100, 207
BshNI	GGYRCC	2 cut(s)	20, 84
BsiSI	CCGG	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	2 cut(s)	100, 207
Bsp143I	GATC	1 cut(s)	117
Bsp19I	CCATGG	1 cut(s)	67
BspACI	CCGC	3 cut(s)	75, 78, 88
BspANI	GGCC	2 cut(s)	100, 207
BspCNI	CTCAG	1 cut(s)	94
BspFNI	CGCG	2 cut(s)	75, 90
BspHI	TCATGA	1 cut(s)	111
BspLI	GGNNCC	3 cut(s)	22, 86, 206
BspT107I	GGYRCC	2 cut(s)	20, 84
BsrDI	GCAATG	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	221
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	1 cut(s)	117
BssNI	GRCGYC	2 cut(s)	21, 85
BssT1I	CCWWGG	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	142
BstACI	GRCGYC	2 cut(s)	21, 85
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	2 cut(s)	102, 175
BstDSI	CCRYGG	1 cut(s)	67
BstEII	GGTNACC	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	220
BstFNI	CGCG	2 cut(s)	75, 90
BstH2I	RGCGCY	3 cut(s)	24, 88, 230
BstHHI	GCGC	3 cut(s)	23, 87, 229
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 167, 204
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	174
BstPAI	GACNNNNGTC	1 cut(s)	69
BstPI	GGTNACC	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	276
BstUI	CGCG	2 cut(s)	75, 90
BsuRI	GGCC	2 cut(s)	100, 207
BtgI	CCRYGG	1 cut(s)	67
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	172
CciI	TCATGA	1 cut(s)	111
CfoI	GCGC	3 cut(s)	23, 87, 229
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	98, 205
CviAII	CATG	5 cut(s)	68, 112, 121, 171, 282
CviJI	RGCY	6 cut(s)	42, 100, 207, 237, 252, 320
CviKI_1	RGCY	6 cut(s)	42, 100, 207, 237, 252, 320
DdeI	CTNAG	2 cut(s)	102, 175
DinI	GGCGCC	2 cut(s)	22, 86
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	67
Eco91I	GGTNACC	1 cut(s)	62
EcoO65I	GGTNACC	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	67
EgeI	GGCGCC	2 cut(s)	22, 86
EheI	GGCGCC	2 cut(s)	22, 86
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	5 cut(s)	71, 115, 124, 174, 285
FaiI	YATR	5 cut(s)	69, 113, 122, 172, 283
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	5 cut(s)	67, 111, 120, 170, 281
Fnu4HI	GCNGC	2 cut(s)	76, 88
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	76, 88
GlaI	GCGC	3 cut(s)	22, 86, 228
GluI	GCNGC	2 cut(s)	76, 88
GsaI	CCCAGC	1 cut(s)	99
HaeII	RGCGCY	3 cut(s)	24, 88, 230
HaeIII	GGCC	2 cut(s)	100, 207
HapII	CCGG	1 cut(s)	125
HhaI	GCGC	3 cut(s)	23, 87, 229
Hin1I	GRCGYC	2 cut(s)	21, 85
Hin1II	CATG	5 cut(s)	71, 115, 124, 174, 285
Hin6I	GCGC	3 cut(s)	21, 85, 227
HinP1I	GCGC	3 cut(s)	21, 85, 227
HinfI	GANTC	2 cut(s)	108, 186
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	1 cut(s)	74
Hpy188I	TCNGA	2 cut(s)	59, 132
Hpy188III	TCNNGA	2 cut(s)	112, 268
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 167, 204
HpyF3I	CTNAG	2 cut(s)	102, 175
Hsp92I	GRCGYC	2 cut(s)	21, 85
Hsp92II	CATG	5 cut(s)	71, 115, 124, 174, 285
HspAI	GCGC	3 cut(s)	21, 85, 227
KasI	GGCGCC	2 cut(s)	20, 84
Kzo9I	GATC	1 cut(s)	117
LpnPI	CCDG	7 cut(s)	37, 81, 114, 138, 234, 263, 290
LweI	GCATC	2 cut(s)	82, 247
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	2 cut(s)	127, 156
MfeI	CAATTG	1 cut(s)	244
MluCI	AATT	3 cut(s)	244, 308, 313
Mly113I	GGCGCC	2 cut(s)	21, 85
MnlI	CCTC	4 cut(s)	8, 32, 53, 146
MseI	TTAA	1 cut(s)	191
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	278
MunI	CAATTG	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	2 cut(s)	75, 90
MwoI	GCNNNNNNNGC	3 cut(s)	84, 167, 204
NarI	GGCGCC	2 cut(s)	21, 85
NcoI	CCATGG	1 cut(s)	67
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	5 cut(s)	71, 115, 124, 174, 285
NlaIV	GGNNCC	3 cut(s)	22, 86, 206
NmuCI	GTSAC	1 cut(s)	62
NspI	RCATGY	1 cut(s)	174
PaeI	GCATGC	1 cut(s)	174
PagI	TCATGA	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	108, 186
PkrI	GCNGC	2 cut(s)	77, 89
PluTI	GGCGCC	2 cut(s)	24, 88
PshAI	GACNNNNGTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	276
PspEI	GGTNACC	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	3 cut(s)	22, 86, 206
PspPI	GGNCC	2 cut(s)	98, 205
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	2 cut(s)	76, 88
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	2 cut(s)	98, 205
ScrFI	CCNGG	1 cut(s)	278
SetI	ASST	5 cut(s)	19, 56, 64, 239, 279
SfaNI	GCATC	2 cut(s)	82, 247
SfoI	GGCGCC	2 cut(s)	22, 86
SphI	GCATGC	1 cut(s)	174
Sse9I	AATT	3 cut(s)	244, 308, 313
SsiI	CCGC	3 cut(s)	75, 78, 88
SspDI	GGCGCC	2 cut(s)	20, 84
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	142
TasI	AATT	3 cut(s)	244, 308, 313
TauI	GCSGC	2 cut(s)	78, 90
TfiI	GAWTC	2 cut(s)	108, 186
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	228
XceI	RCATGY	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.