Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Reverse (-)

41675908 .. 41679774

Gene Structure 3867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG329200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAGCCATTCTTCATGTTGTTGGGGAGCCAGAGGAACTGGCCGACATCGTCGACGGAGTCAAACGCCAGCATGTTGGGGAGGAGATCGGGGGTGAATGAGTCCTTATCGCCGATTTCTGCTGTAGCGGTGGCTGATGTCGAAGATTCGGCCGTTTCCGTGGACTTCGCGGCGAGGGGGGATCAGGTTGGTGGCCGTGGCGCCAGAGGAGACGTCGACGGGGGTGGTGCCCGGAATGGAAGGGTGGGCTGTGGTGGCGTGGGAGAGGGTGGCTTGAAGGGAGAAGAGGAGAAGGAGAAGGATTGGACCGTGACTGAGGGGAAAATCAATGGCTTCTTCGTCCTTGAGACCTTTGTCGACGAAAACGACAGCGGCCGCGGCGAACAATGGCGGAGCTGGAAGTTCCGAGAGGCAACAACTCCATCCTGCTCGGTAAACGACGTCGTCTGTTCGATCCAAGCTGCCGTCGTCCTTGACTTCATGGTTGAAAGAGGAGGCGGCGCCGATGTTGAGCGTGGAGGCTTCTGCCACAGGTTCGGAGGTGACCGTGGTCGCGGCGGTAGGCGCCTCGGTGCTGGGCCTGAGACAATCATGAAGATCATGCCGATTCAGAAGCAAATCGTTTTGGTTAGAGGACTCGCTTCTTCTGTTGTGTTGGTAAATTTCTTTTGGTTCTTTGATGATAACTTGAATATATATCTGAGTGAGGAGGCTATCAAGGAGGAAAGACATGAGGCATGCAATGGGTGCCAAAAGGATGTCCCAGTGGCGCTTATAAGCTTTCACAATTGTAGCCTTGATGCCAAAATCAAGACCAACTTGGAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

276

Amino Acids

29.76

Weight (kDa)

5.04

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	776
AatII	GACGTC	2 cut(s)	216, 444
AccB1I	GGYRCC	5 cut(s)	200, 227, 500, 564, 747
AccI	GTMKAC	3 cut(s)	53, 216, 357
AccII	CGCG	3 cut(s)	170, 378, 555
AciI	CCGC	9 cut(s)	128, 170, 372, 376, 378, 391, 498, 555, 558
AclWI	GGATC	2 cut(s)	189, 448
AcoI	YGGCCR	4 cut(s)	41, 150, 193, 373
AcsI	RAATTY	1 cut(s)	661
AcyI	GRCGYC	5 cut(s)	201, 213, 441, 501, 565
AgsI	TTSAA	3 cut(s)	277, 488, 691
AluBI	AGCT	3 cut(s)	396, 461, 780
AluI	AGCT	3 cut(s)	396, 461, 780
Alw26I	GTCTC	3 cut(s)	204, 341, 578
AlwI	GGATC	2 cut(s)	189, 448
AoxI	GGCC	5 cut(s)	41, 150, 193, 373, 578
ApeKI	GCWGC	1 cut(s)	461
ApoI	RAATTY	1 cut(s)	661
AspLEI	GCGC	4 cut(s)	203, 503, 567, 772
AspS9I	GGNCC	2 cut(s)	306, 578
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	2 cut(s)	106, 554
AvaII	GGWCC	1 cut(s)	306
BaeGI	GKGCMC	1 cut(s)	232
BanI	GGYRCC	5 cut(s)	200, 227, 500, 564, 747
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	1 cut(s)	430
BceAI	ACGGC	3 cut(s)	137, 180, 449
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	3 cut(s)	204, 341, 578
BfmI	CTRYAG	1 cut(s)	123
BfoI	RGCGCY	4 cut(s)	204, 504, 568, 773
BisI	GCNGC	7 cut(s)	171, 373, 376, 379, 462, 499, 556
BlsI	GCNGC	7 cut(s)	172, 374, 377, 380, 463, 500, 557
Bme1390I	CCNGG	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	306
BmgT120I	GGNCC	2 cut(s)	306, 578
BmiI	GGNNCC	7 cut(s)	6, 29, 202, 229, 502, 566, 749
BmrFI	CCNGG	1 cut(s)	232
BmrI	ACTGGG	1 cut(s)	758
BmsI	GCATC	1 cut(s)	790
BmuI	ACTGGG	1 cut(s)	758
BoxI	GACNNNNGTC	2 cut(s)	353, 549
BpuEI	CTTGAG	1 cut(s)	365
BpuMI	CCSGG	1 cut(s)	232
BsaHI	GRCGYC	5 cut(s)	201, 213, 441, 501, 565
BsaI	GGTCTC	1 cut(s)	341
BsaJI	CCNNGG	5 cut(s)	159, 196, 376, 547, 568
Bse1I	ACTGG	2 cut(s)	44, 764
Bse3DI	GCAATG	1 cut(s)	748
BseDI	CCNNGG	5 cut(s)	159, 196, 376, 547, 568
BseGI	GGATG	2 cut(s)	422, 763
BseMI	GCAATG	1 cut(s)	748
BseMII	CTCAG	3 cut(s)	306, 573, 692
BseNI	ACTGG	2 cut(s)	44, 764
BseRI	GAGGAG	5 cut(s)	97, 222, 302, 507, 722
BseSI	GKGCMC	1 cut(s)	232
BseX3I	CGGCCG	2 cut(s)	150, 373
BseXI	GCAGC	1 cut(s)	448
BseYI	CCCAGC	1 cut(s)	575
Bsh1236I	CGCG	3 cut(s)	170, 378, 555
Bsh1285I	CGRYCG	2 cut(s)	153, 376
BshFI	GGCC	5 cut(s)	43, 152, 195, 375, 580
BshNI	GGYRCC	5 cut(s)	200, 227, 500, 564, 747
BsiEI	CGRYCG	2 cut(s)	153, 376
BsiSI	CCGG	1 cut(s)	232
BslFI	GGGAC	1 cut(s)	746
BsmAI	GTCTC	3 cut(s)	204, 341, 578
BsmBI	CGTCTC	1 cut(s)	204
BsmFI	GGGAC	1 cut(s)	746
BsnI	GGCC	5 cut(s)	43, 152, 195, 375, 580
Bso31I	GGTCTC	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	4 cut(s)	86, 181, 453, 597
BspACI	CCGC	9 cut(s)	128, 170, 372, 376, 378, 391, 498, 555, 558
BspANI	GGCC	5 cut(s)	43, 152, 195, 375, 580
BspCNI	CTCAG	3 cut(s)	307, 574, 693
BspFNI	CGCG	3 cut(s)	170, 378, 555
BspHI	TCATGA	1 cut(s)	591
BspLI	GGNNCC	7 cut(s)	6, 29, 202, 229, 502, 566, 749
BspPI	GGATC	2 cut(s)	189, 448
BspT107I	GGYRCC	5 cut(s)	200, 227, 500, 564, 747
BspTNI	GGTCTC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	748
BsrI	ACTGG	2 cut(s)	44, 764
BssECI	CCNNGG	5 cut(s)	159, 196, 376, 547, 568
BssMI	GATC	4 cut(s)	86, 181, 453, 597
BssNI	GRCGYC	5 cut(s)	201, 213, 441, 501, 565
Bst4CI	ACNGT	2 cut(s)	310, 548
Bst6I	CTCTTC	1 cut(s)	279
BstACI	GRCGYC	5 cut(s)	201, 213, 441, 501, 565
BstAPI	GCANNNNNTGC	1 cut(s)	747
BstC8I	GCNNGC	2 cut(s)	70, 739
BstDEI	CTNAG	3 cut(s)	315, 582, 701
BstDSI	CCRYGG	4 cut(s)	159, 196, 376, 547
BstEII	GGTNACC	1 cut(s)	542
BstF5I	GGATG	2 cut(s)	422, 763
BstFNI	CGCG	3 cut(s)	170, 378, 555
BstH2I	RGCGCY	4 cut(s)	204, 504, 568, 773
BstHHI	GCGC	4 cut(s)	203, 503, 567, 772
BstKTI	GATC	4 cut(s)	89, 184, 456, 600
BstMAI	GTCTC	3 cut(s)	204, 341, 578
BstMBI	GATC	4 cut(s)	86, 181, 453, 597
BstMCI	CGRYCG	2 cut(s)	153, 376
BstMWI	GCNNNNNNNGC	4 cut(s)	255, 378, 564, 747
BstNSI	RCATGY	2 cut(s)	76, 741
BstPAI	GACNNNNGTC	2 cut(s)	353, 549
BstPI	GGTNACC	1 cut(s)	542
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	123
BstSLI	GKGCMC	1 cut(s)	232
BstUI	CGCG	3 cut(s)	170, 378, 555
BstV1I	GCAGC	1 cut(s)	448
BstXI	CCANNNNNNTGG	1 cut(s)	76
BstZI	CGGCCG	2 cut(s)	150, 373
BsuRI	GGCC	5 cut(s)	43, 152, 195, 375, 580
BtgI	CCRYGG	4 cut(s)	159, 196, 376, 547
BtsCI	GGATG	2 cut(s)	422, 763
BtsIMutI	CAGTG	1 cut(s)	771
Cac8I	GCNNGC	2 cut(s)	70, 739
CciI	TCATGA	1 cut(s)	591
CciNI	GCGGCCGC	1 cut(s)	373
CfoI	GCGC	4 cut(s)	203, 503, 567, 772
Cfr13I	GGNCC	2 cut(s)	306, 578
Cfr42I	CCGCGG	1 cut(s)	379
CviAII	CATG	7 cut(s)	16, 73, 481, 592, 601, 731, 738
DdeI	CTNAG	3 cut(s)	315, 582, 701
DinI	GGCGCC	3 cut(s)	202, 502, 566
DpnI	GATC	4 cut(s)	88, 183, 455, 599
DpnII	GATC	4 cut(s)	86, 181, 453, 597
EaeI	YGGCCR	4 cut(s)	41, 150, 193, 373
EagI	CGGCCG	2 cut(s)	150, 373
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
EciI	GGCGGA	1 cut(s)	406
EclXI	CGGCCG	2 cut(s)	150, 373
Eco31I	GGTCTC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	306
Eco52I	CGGCCG	2 cut(s)	150, 373
Eco91I	GGTNACC	1 cut(s)	542
EcoO65I	GGTNACC	1 cut(s)	542
EgeI	GGCGCC	3 cut(s)	202, 502, 566
EheI	GGCGCC	3 cut(s)	202, 502, 566
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	7 cut(s)	19, 76, 484, 595, 604, 734, 741
FalI	AAGNNNNNCTT	1 cut(s)	803
FaqI	GGGAC	1 cut(s)	746
FatI	CATG	7 cut(s)	15, 72, 480, 591, 600, 730, 737
FblI	GTMKAC	3 cut(s)	53, 216, 357
Fnu4HI	GCNGC	7 cut(s)	171, 373, 376, 379, 462, 499, 556
FokI	GGATG	2 cut(s)	409, 770
Fsp4HI	GCNGC	7 cut(s)	171, 373, 376, 379, 462, 499, 556
GlaI	GCGC	4 cut(s)	202, 502, 566, 771
GluI	GCNGC	7 cut(s)	171, 373, 376, 379, 462, 499, 556
GsaI	CCCAGC	1 cut(s)	579
HaeII	RGCGCY	4 cut(s)	204, 504, 568, 773
HaeIII	GGCC	5 cut(s)	43, 152, 195, 375, 580
HapII	CCGG	1 cut(s)	232
HhaI	GCGC	4 cut(s)	203, 503, 567, 772
Hin1I	GRCGYC	5 cut(s)	201, 213, 441, 501, 565
Hin1II	CATG	7 cut(s)	19, 76, 484, 595, 604, 734, 741
Hin6I	GCGC	4 cut(s)	201, 501, 565, 770
HinP1I	GCGC	4 cut(s)	201, 501, 565, 770
HincII	GTYRAC	3 cut(s)	54, 217, 358
HindII	GTYRAC	3 cut(s)	54, 217, 358
HindIII	AAGCTT	1 cut(s)	778
HinfI	GANTC	5 cut(s)	59, 101, 146, 607, 636
HpaII	CCGG	1 cut(s)	232
HphI	GGTGA	2 cut(s)	106, 554
Hpy166II	GTNNAC	5 cut(s)	54, 163, 217, 358, 436
Hpy188I	TCNGA	4 cut(s)	407, 539, 612, 702
Hpy188III	TCNNGA	2 cut(s)	592, 811
Hpy8I	GTNNAC	5 cut(s)	54, 163, 217, 358, 436
Hpy99I	CGWCG	8 cut(s)	55, 58, 218, 221, 362, 443, 446, 470
HpyAV	CCTTC	4 cut(s)	234, 271, 286, 292
HpyCH4III	ACNGT	2 cut(s)	310, 548
HpyCH4IV	ACGT	2 cut(s)	213, 441
HpyCH4V	TGCA	1 cut(s)	741
HpyF10VI	GCNNNNNNNGC	4 cut(s)	255, 378, 564, 747
HpyF3I	CTNAG	3 cut(s)	315, 582, 701
HpySE526I	ACGT	2 cut(s)	213, 441
Hsp92I	GRCGYC	5 cut(s)	201, 213, 441, 501, 565
Hsp92II	CATG	7 cut(s)	19, 76, 484, 595, 604, 734, 741
HspAI	GCGC	4 cut(s)	201, 501, 565, 770
KasI	GGCGCC	3 cut(s)	200, 500, 564
KspI	CCGCGG	1 cut(s)	379
Kzo9I	GATC	4 cut(s)	86, 181, 453, 597
LmnI	GCTCC	3 cut(s)	4, 27, 393
Lsp1109I	GCAGC	1 cut(s)	448
LweI	GCATC	1 cut(s)	790
MaeII	ACGT	2 cut(s)	213, 441
MaeIII	GTNAC	2 cut(s)	310, 542
MalI	GATC	4 cut(s)	88, 183, 455, 599
MboI	GATC	4 cut(s)	86, 181, 453, 597
MboII	GAAGA	6 cut(s)	4, 155, 296, 328, 607, 636
MfeI	CAATTG	1 cut(s)	787
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	2 cut(s)	661, 787
Mly113I	GGCGCC	3 cut(s)	201, 501, 565
MlyI	GAGTC	3 cut(s)	68, 110, 630
MseI	TTAA	1 cut(s)	829
MspA1I	CMGCKG	2 cut(s)	372, 378
MspI	CCGG	1 cut(s)	232
MspR9I	CCNGG	1 cut(s)	232
MunI	CAATTG	1 cut(s)	787
MvnI	CGCG	3 cut(s)	170, 378, 555
MwoI	GCNNNNNNNGC	4 cut(s)	255, 378, 564, 747
NarI	GGCGCC	3 cut(s)	201, 501, 565
NciI	CCSGG	1 cut(s)	232
NdeII	GATC	4 cut(s)	86, 181, 453, 597
NlaIII	CATG	7 cut(s)	19, 76, 484, 595, 604, 734, 741
NlaIV	GGNNCC	7 cut(s)	6, 29, 202, 229, 502, 566, 749
NmuCI	GTSAC	2 cut(s)	310, 542
NotI	GCGGCCGC	1 cut(s)	373
NspI	RCATGY	2 cut(s)	76, 741
PaeI	GCATGC	1 cut(s)	741
PagI	TCATGA	1 cut(s)	591
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	146, 607
PflFI	GACNNNGTC	3 cut(s)	49, 58, 443
PkrI	GCNGC	7 cut(s)	172, 374, 377, 380, 463, 500, 557
PleI	GAGTC	3 cut(s)	67, 109, 630
PluTI	GGCGCC	3 cut(s)	204, 504, 568
PpsI	GAGTC	3 cut(s)	67, 109, 630
PshAI	GACNNNNGTC	2 cut(s)	353, 549
PsiI	TTATAA	1 cut(s)	776
PspEI	GGTNACC	1 cut(s)	542
PspFI	CCCAGC	1 cut(s)	575
PspN4I	GGNNCC	7 cut(s)	6, 29, 202, 229, 502, 566, 749
PspPI	GGNCC	2 cut(s)	306, 578
PsyI	GACNNNGTC	3 cut(s)	49, 58, 443
SacII	CCGCGG	1 cut(s)	379
SalI	GTCGAC	3 cut(s)	52, 215, 356
SaqAI	TTAA	1 cut(s)	829
SatI	GCNGC	7 cut(s)	171, 373, 376, 379, 462, 499, 556
Sau3AI	GATC	4 cut(s)	86, 181, 453, 597
Sau96I	GGNCC	2 cut(s)	306, 578
SchI	GAGTC	3 cut(s)	68, 110, 630
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	9 cut(s)	189, 216, 353, 398, 444, 463, 536, 544, 782
SfaNI	GCATC	1 cut(s)	790
SfcI	CTRYAG	1 cut(s)	123
SfoI	GGCGCC	3 cut(s)	202, 502, 566
Sfr303I	CCGCGG	1 cut(s)	379
SgrBI	CCGCGG	1 cut(s)	379
SgrDI	CGTCGACG	2 cut(s)	52, 215
SinI	GGWCC	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SphI	GCATGC	1 cut(s)	741
Sse9I	AATT	2 cut(s)	661, 787
SsiI	CCGC	9 cut(s)	128, 170, 372, 376, 378, 391, 498, 555, 558
SspDI	GGCGCC	3 cut(s)	200, 500, 564
StyD4I	CCNGG	1 cut(s)	230
TaaI	ACNGT	2 cut(s)	310, 548
TaiI	ACGT	2 cut(s)	216, 444
TaqI	TCGA	5 cut(s)	53, 141, 216, 357, 452
TasI	AATT	2 cut(s)	661, 787
TauI	GCSGC	6 cut(s)	173, 375, 378, 381, 501, 558
TfiI	GAWTC	2 cut(s)	146, 607
Tru1I	TTAA	1 cut(s)	829
Tru9I	TTAA	1 cut(s)	829
TscAI	CASTG	1 cut(s)	771
TseFI	GTSAC	2 cut(s)	310, 542
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	2 cut(s)	310, 542
TspDTI	ATGAA	3 cut(s)	4, 469, 608
TspGWI	ACGGA	2 cut(s)	71, 148
TspRI	CASTG	1 cut(s)	771
Tth111I	GACNNNGTC	3 cut(s)	49, 58, 443
VpaK11BI	GGWCC	1 cut(s)	306
XapI	RAATTY	1 cut(s)	661
XceI	RCATGY	2 cut(s)	76, 741
XmiI	GTMKAC	3 cut(s)	53, 216, 357
ZraI	GACGTC	2 cut(s)	214, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.