Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Forward (+)

32649758 .. 32651631

Gene Structure 1874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G350700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGAGGTGGGTCAATGAAATCGAACCCAACCAAGGCGAGGAAGAGGGTGGAGGCCACTGAGGAGTCAAGTGTACCTTCTCTTGTTCGTGGCAAGGACGGCAGTGCCTTTGCCCGATGCGAGGAGTGCAACAAGAATGTCCCAGTGGCACTCATCAGCATGCACAGCTGTAGCCTTGATGCTAAAATCAAGTTGCATCTGAGCTCTCAAGTTGTGGAAAGGCAGCCTGAAGCGAATAAGAAGTCTCCCACAGAGAGGAAGAGGTCCACTACATCAGAACCCAAGTCAAAGAGAGCTAAGAAGGACAAAGATCCAAATGCACCCAAGCGCCCTCTCACTGCCTTCTTCCTCTTCATGGACGATTTCAGGAAATCCTTTAAGGAAGCTAATCCTGATTCGAAGCTTGTTAAGACGGTTGCAAAGGAGGGTGGCGAGAAGTGGAAGTCTATGACTGACGAGGAGAAGAAGCCATATGTGGATAAGGCAGCTGAGCTTAAAGCAGAGTATAAAAAAGCATTGGAGATGGAGACTGATGATGCTGATGTTGATGCCGATGCCGATGCAGAAGTTGGGGATGATGAAATTGAAGGAGGTTCAGAGAAAGAAGCTTCAGAGAAGGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

209

Amino Acids

22.99

Weight (kDa)

6.26

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	305
AcuI	CTGAAG	2 cut(s)	249, 594
AfaI	GTAC	1 cut(s)	75
AfiI	CCNNNNNNNGG	5 cut(s)	34, 39, 121, 255, 355
AgsI	TTSAA	1 cut(s)	587
AluBI	AGCT	8 cut(s)	168, 204, 296, 386, 403, 488, 493, 608
AluI	AGCT	8 cut(s)	168, 204, 296, 386, 403, 488, 493, 608
Alw21I	GWGCWC	1 cut(s)	206
Alw26I	GTCTC	2 cut(s)	249, 521
AlwI	GGATC	1 cut(s)	305
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	2 cut(s)	223, 485
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	264
AsuII	TTCGAA	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	235, 497
BccI	CCATC	1 cut(s)	517
BceAI	ACGGC	1 cut(s)	115
BcgI	CGANNNNNNTGC	2 cut(s)	542, 576
BcoDI	GTCTC	2 cut(s)	249, 521
BfmI	CTRYAG	1 cut(s)	169
BfoI	RGCGCY	1 cut(s)	331
BisI	GCNGC	2 cut(s)	224, 486
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	2 cut(s)	225, 487
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	264
BmrI	ACTGGG	1 cut(s)	137
BmsI	GCATC	7 cut(s)	107, 169, 205, 526, 538, 544, 550
BmuI	ACTGGG	1 cut(s)	137
Bpu1102I	GCTNAGC	1 cut(s)	489
Bpu14I	TTCGAA	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 39, 121, 255, 355
Bse1I	ACTGG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	580
BseLI	CCNNNNNNNGG	5 cut(s)	34, 39, 121, 255, 355
BseMII	CTCAG	3 cut(s)	51, 191, 480
BseNI	ACTGG	1 cut(s)	143
BseRI	GAGGAG	3 cut(s)	77, 137, 473
BseXI	GCAGC	2 cut(s)	235, 497
BshFI	GGCC	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	206
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	5 cut(s)	34, 39, 121, 255, 355
BsmAI	GTCTC	2 cut(s)	249, 521
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	310
Bsp1720I	GCTNAGC	1 cut(s)	489
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	3 cut(s)	52, 192, 481
BspPI	GGATC	1 cut(s)	305
BspT104I	TTCGAA	1 cut(s)	398
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	1 cut(s)	310
BssT1I	CCWWGG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	3 cut(s)	38, 254, 356
BstBI	TTCGAA	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	4 cut(s)	60, 200, 297, 489
BstF5I	GGATG	1 cut(s)	580
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	2 cut(s)	249, 521
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 126, 165
BstNSI	RCATGY	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	169
BstV1I	GCAGC	2 cut(s)	235, 497
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	580
BtsI	GCAGTG	2 cut(s)	109, 336
BtsIMutI	CAGTG	4 cut(s)	57, 109, 150, 336
Cac8I	GCNNGC	1 cut(s)	161
CfoI	GCGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	2 cut(s)	160, 355
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	4 cut(s)	60, 200, 297, 489
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eam1104I	CTCTTC	3 cut(s)	38, 254, 356
EarI	CTCTTC	3 cut(s)	38, 254, 356
Ecl136II	GAGCTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	264
Eco53kI	GAGCTC	1 cut(s)	204
Eco57I	CTGAAG	2 cut(s)	249, 594
EcoICRI	GAGCTC	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	163, 358
FaiI	YATR	6 cut(s)	161, 356, 449, 472, 474, 507
FalI	AAGNNNNNCTT	2 cut(s)	61, 93
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	2 cut(s)	159, 354
FauNDI	CATATG	1 cut(s)	472
Fnu4HI	GCNGC	2 cut(s)	224, 486
FokI	GGATG	1 cut(s)	587
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	2 cut(s)	224, 486
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	2 cut(s)	224, 486
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	330
Hin1II	CATG	2 cut(s)	163, 358
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HindIII	AAGCTT	2 cut(s)	401, 606
HinfI	GANTC	2 cut(s)	65, 395
Hpy166II	GTNNAC	2 cut(s)	74, 267
Hpy188I	TCNGA	4 cut(s)	201, 277, 598, 613
Hpy188III	TCNNGA	2 cut(s)	367, 392
Hpy8I	GTNNAC	2 cut(s)	74, 267
HpyAV	CCTTC	5 cut(s)	87, 295, 352, 581, 610
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4V	TGCA	6 cut(s)	129, 163, 196, 320, 419, 563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 126, 165
HpyF3I	CTNAG	4 cut(s)	60, 200, 297, 489
Hsp92II	CATG	2 cut(s)	163, 358
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	310
LpnPI	CCDG	4 cut(s)	156, 240, 352, 405
Lsp1109I	GCAGC	2 cut(s)	235, 497
LweI	GCATC	7 cut(s)	107, 169, 205, 526, 538, 544, 550
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	5 cut(s)	55, 271, 337, 343, 475
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	206
MluCI	AATT	1 cut(s)	582
MlyI	GAGTC	1 cut(s)	74
MseI	TTAA	4 cut(s)	378, 408, 495, 625
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	2 cut(s)	168, 488
MwoI	GCNNNNNNNGC	3 cut(s)	99, 126, 165
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	2 cut(s)	163, 358
NspI	RCATGY	1 cut(s)	163
NspV	TTCGAA	1 cut(s)	398
PaeI	GCATGC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	395
PkrI	GCNGC	2 cut(s)	225, 487
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Psp124BI	GAGCTC	1 cut(s)	206
PspPI	GGNCC	1 cut(s)	264
PsuI	RGATCY	1 cut(s)	310
PvuII	CAGCTG	2 cut(s)	168, 488
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	158
SacI	GAGCTC	1 cut(s)	206
SaqAI	TTAA	4 cut(s)	378, 408, 495, 625
SatI	GCNGC	2 cut(s)	224, 486
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	1 cut(s)	264
SchI	GAGTC	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	206
SfaNI	GCATC	7 cut(s)	107, 169, 205, 526, 538, 544, 550
SfcI	CTRYAG	1 cut(s)	169
SfuI	TTCGAA	1 cut(s)	398
SinI	GGWCC	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
SphI	GCATGC	1 cut(s)	163
Sse9I	AATT	1 cut(s)	582
SstI	GAGCTC	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	415
TaqI	TCGA	2 cut(s)	23, 398
TasI	AATT	1 cut(s)	582
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	4 cut(s)	378, 408, 495, 625
Tru9I	TTAA	4 cut(s)	378, 408, 495, 625
TscAI	CASTG	4 cut(s)	64, 109, 150, 343
TseI	GCWGC	2 cut(s)	223, 485
TspDTI	ATGAA	3 cut(s)	32, 343, 594
TspRI	CASTG	4 cut(s)	64, 109, 150, 343
VpaK11BI	GGWCC	1 cut(s)	264
XceI	RCATGY	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.