Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Reverse (-)

119376 .. 121380

Gene Structure 2005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1001900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGAGGAGGGTCAATGAAATCGAACCCAACCAAGGCAAGGAGGAGAGTGGAGGCCACTGAGACCGGGGAGAACTCCCTGTCAACCGTACCACCTTCTCTCGTTCGCGGCAAAGATGGCAGTGCCTTTGCCCGATGCGAGGAGTGCAACAAGGACGTGCCGGTGGCACTCATCAGCATGCACAGTTGTAGCCTCGATGCCAAAATCAAGCTCAACCTCAAGGCTCAAGTTGTGGAAAAGCCCCCTGAAGTGAAAAGGAAGCTTCCCGCTGACAGAAAGAGGTCCACCACCACCACTTCACAACCAAAGACGTCAAAGAGAGCCAAGAAGGACAAAGATCCAAATGCACCCAAGCGCCCTCTCACCGCCTTCTTCCTCTTCATGGATGATTTCAGGAAATCCTACAAGGAAGCTAATCCTGATTCCAAAGGCGTTAAGATGGTTGCAAAGGAGGGTGGTGAGAAGTGGAAGTCTATGACTGATGAGGAGAAGAAGCCCTACGTGGATAAAGCTGCTGAGCTTAAAGAAGAGTACAAAATAGCACTGGAGAGTGACATTGCAGAAGCTAGGGATGGTGAAACACCGGAAGGGGTTTTGGAGAAAGAAGCTTCAGAGAAGGAAGGGGAGGAAGAAATAGCCGATGTTGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

218

Amino Acids

24.04

Weight (kDa)

7.6

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	114 - 179	5.5e-13	HMG-box domain
HMG_box	PF00505	117 - 180	1.6e-19	HMG (high mobility group) box
HMG_WDHD1	PF24815	120 - 170	9.3e-16	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	314
AccII	CGCG	1 cut(s)	108
AciI	CCGC	3 cut(s)	108, 267, 366
AclWI	GGATC	1 cut(s)	332
AcuI	CTGAAG	2 cut(s)	267, 594
AcyI	GRCGYC	1 cut(s)	311
AfaI	GTAC	2 cut(s)	90, 533
AfiI	CCNNNNNNNGG	4 cut(s)	34, 39, 139, 382
AjiI	CACGTC	1 cut(s)	157
AluBI	AGCT	7 cut(s)	211, 262, 413, 512, 520, 566, 608
AluI	AGCT	7 cut(s)	211, 262, 413, 512, 520, 566, 608
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	332
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	512
AspLEI	GCGC	1 cut(s)	357
AspS9I	GGNCC	1 cut(s)	282
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	3 cut(s)	355, 470, 587
AvaII	GGWCC	1 cut(s)	282
BarI	GAAGNNNNNNTAC	2 cut(s)	482, 514
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	3 cut(s)	110, 433, 566
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	1 cut(s)	567
BfoI	RGCGCY	1 cut(s)	358
BisI	GCNGC	2 cut(s)	109, 513
BlpI	GCTNAGC	1 cut(s)	516
BlsI	GCNGC	2 cut(s)	110, 514
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	282
BmgBI	CACGTC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	67
BmsI	GCATC	2 cut(s)	125, 187
BpmI	CTGGAG	1 cut(s)	566
Bpu1102I	GCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	2 cut(s)	203, 210
BpuMI	CCSGG	1 cut(s)	67
BsaAI	YACGTR	1 cut(s)	502
BsaHI	GRCGYC	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	33, 66
BsaWI	WCCGGW	1 cut(s)	583
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 39, 139, 382
Bse118I	RCCGGY	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	549
Bse3DI	GCAATG	1 cut(s)	555
BseDI	CCNNGG	2 cut(s)	33, 66
BseGI	GGATG	2 cut(s)	391, 577
BseLI	CCNNNNNNNGG	4 cut(s)	34, 39, 139, 382
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	2 cut(s)	51, 507
BseNI	ACTGG	1 cut(s)	549
BseRI	GAGGAG	4 cut(s)	21, 58, 155, 500
BseXI	GCAGC	1 cut(s)	499
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	56
BsiSI	CCGG	3 cut(s)	66, 161, 584
BslI	CCNNNNNNNGG	4 cut(s)	34, 39, 139, 382
BsmAI	GTCTC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	337
Bsp1720I	GCTNAGC	1 cut(s)	516
BspACI	CCGC	3 cut(s)	108, 267, 366
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	2 cut(s)	52, 508
BspFNI	CGCG	1 cut(s)	108
BspPI	GGATC	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	555
BsrFI	RCCGGY	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	549
BssAI	RCCGGY	1 cut(s)	160
BssECI	CCNNGG	2 cut(s)	33, 66
BssMI	GATC	1 cut(s)	337
BssNI	GRCGYC	1 cut(s)	311
BssT1I	CCWWGG	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	88, 185
Bst6I	CTCTTC	2 cut(s)	383, 522
BstACI	GRCGYC	1 cut(s)	311
BstBAI	YACGTR	1 cut(s)	502
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	2 cut(s)	60, 516
BstF5I	GGATG	2 cut(s)	391, 577
BstFNI	CGCG	1 cut(s)	108
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	1 cut(s)	340
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 144
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	65
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	499
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	56
BtrI	CACGTC	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	391, 577
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	3 cut(s)	57, 127, 542
Cac8I	GCNNGC	1 cut(s)	179
CfoI	GCGC	1 cut(s)	357
Cfr10I	RCCGGY	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	282
Csp6I	GTAC	2 cut(s)	89, 532
CviAII	CATG	2 cut(s)	178, 382
CviQI	GTAC	2 cut(s)	89, 532
DdeI	CTNAG	2 cut(s)	60, 516
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
Eam1104I	CTCTTC	2 cut(s)	383, 522
EarI	CTCTTC	2 cut(s)	383, 522
Eco130I	CCWWGG	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	282
Eco57I	CTGAAG	2 cut(s)	267, 594
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	181, 385
FaiI	YATR	3 cut(s)	179, 383, 476
FatI	CATG	2 cut(s)	177, 381
FauI	CCCGC	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	109, 513
FokI	GGATG	2 cut(s)	398, 584
Fsp4HI	GCNGC	2 cut(s)	109, 513
FspBI	CTAG	1 cut(s)	567
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	2 cut(s)	109, 513
GsuI	CTGGAG	1 cut(s)	566
HaeII	RGCGCY	1 cut(s)	358
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	3 cut(s)	66, 161, 584
HhaI	GCGC	1 cut(s)	357
Hin1I	GRCGYC	1 cut(s)	311
Hin1II	CATG	2 cut(s)	181, 385
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HindIII	AAGCTT	2 cut(s)	260, 606
HinfI	GANTC	1 cut(s)	422
HpaII	CCGG	3 cut(s)	66, 161, 584
HphI	GGTGA	3 cut(s)	355, 470, 587
Hpy166II	GTNNAC	2 cut(s)	84, 285
Hpy188I	TCNGA	1 cut(s)	613
Hpy188III	TCNNGA	2 cut(s)	394, 419
Hpy8I	GTNNAC	2 cut(s)	84, 285
HpyAV	CCTTC	6 cut(s)	105, 322, 379, 581, 610, 614
HpyCH4III	ACNGT	2 cut(s)	88, 185
HpyCH4IV	ACGT	3 cut(s)	156, 311, 501
HpyCH4V	TGCA	5 cut(s)	147, 181, 347, 446, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 144
HpyF3I	CTNAG	2 cut(s)	60, 516
HpySE526I	ACGT	3 cut(s)	156, 311, 501
Hsp92I	GRCGYC	1 cut(s)	311
Hsp92II	CATG	2 cut(s)	181, 385
HspAI	GCGC	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	337
LpnPI	CCDG	8 cut(s)	79, 92, 174, 258, 379, 432, 530, 597
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	2 cut(s)	125, 187
MaeI	CTAG	1 cut(s)	567
MaeII	ACGT	3 cut(s)	156, 311, 501
MaeIII	GTNAC	1 cut(s)	551
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	5 cut(s)	364, 370, 502, 539, 641
MflI	RGATCY	1 cut(s)	337
MseI	TTAA	2 cut(s)	435, 522
MslI	CAYNNNNRTG	1 cut(s)	176
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	3 cut(s)	66, 161, 584
MspR9I	CCNGG	1 cut(s)	67
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	2 cut(s)	117, 144
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	2 cut(s)	181, 385
NmuCI	GTSAC	1 cut(s)	551
NspI	RCATGY	1 cut(s)	181
PaeI	GCATGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	422
PkrI	GCNGC	2 cut(s)	110, 514
Ppu21I	YACGTR	1 cut(s)	502
PspPI	GGNCC	1 cut(s)	282
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	2 cut(s)	90, 533
RsaNI	GTAC	2 cut(s)	89, 532
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	435, 522
SatI	GCNGC	2 cut(s)	109, 513
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	1 cut(s)	282
ScrFI	CCNGG	1 cut(s)	67
SfaNI	GCATC	2 cut(s)	125, 187
SinI	GGWCC	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	176
SmlI	CTYRAG	2 cut(s)	218, 225
SmoI	CTYRAG	2 cut(s)	218, 225
SphI	GCATGC	1 cut(s)	181
SsiI	CCGC	3 cut(s)	108, 267, 366
SspMI	CTAG	1 cut(s)	567
StyD4I	CCNGG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	2 cut(s)	88, 185
TaiI	ACGT	3 cut(s)	159, 314, 504
TaqI	TCGA	2 cut(s)	23, 195
TatI	WGTACW	1 cut(s)	531
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	2 cut(s)	435, 522
Tru9I	TTAA	2 cut(s)	435, 522
TscAI	CASTG	3 cut(s)	64, 127, 549
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	1 cut(s)	512
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	2 cut(s)	32, 370
TspRI	CASTG	3 cut(s)	64, 127, 549
VpaK11BI	GGWCC	1 cut(s)	282
XceI	RCATGY	1 cut(s)	181
XspI	CTAG	1 cut(s)	567
ZraI	GACGTC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.