Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Forward (+)

15381566 .. 15382111

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g24080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGGAGGTGGGTCAATGAAATCGAACCCAACAAGGTCAAGGAAGAGGGTGGAGGCCACAGCGGAGGACTCCTCCTCTAGATCTTCTCTTGTTCGCGGCAAGGACGGCAGTGCCTTTGCCCGCTGCGAGGGGTGCAAAAAGGATGTCCCTGTGGCAACCATAAGCTTTCACAGTTGTAGCCTTGATGCCAAAATCAGGAACAATCTGGAGGCTCAAGTCGTCGAAAAGCCCAGCCAAGTGACTAAGAAGCCTCCCACTGCCGGGAAGAAGAAATCGACTACATCGAAACAATGTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

100

Amino Acids

10.57

Weight (kDa)

9.98

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	96
AciI	CCGC	3 cut(s)	62, 96, 121
AfiI	CCNNNNNNNGG	4 cut(s)	127, 195, 260, 261
AluBI	AGCT	1 cut(s)	165
AluI	AGCT	1 cut(s)	165
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	123
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
AsuC2I	CCSGG	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	262
BfaI	CTAG	1 cut(s)	78
BglII	AGATCT	1 cut(s)	80
BisI	GCNGC	2 cut(s)	97, 124
BlsI	GCNGC	2 cut(s)	98, 125
Bme1390I	CCNGG	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	262
BmsI	GCATC	1 cut(s)	175
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BpmI	CTGGAG	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 195, 260, 261
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	4 cut(s)	127, 195, 260, 261
BseRI	GAGGAG	2 cut(s)	61, 64
BseXI	GCAGC	1 cut(s)	110
BseYI	CCCAGC	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	4 cut(s)	127, 195, 260, 261
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	80
BspACI	CCGC	3 cut(s)	62, 96, 121
BspANI	GGCC	1 cut(s)	56
BspFNI	CGCG	1 cut(s)	96
BssMI	GATC	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	173
Bst6I	CTCTTC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	148
BstFNI	CGCG	1 cut(s)	96
BstKTI	GATC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	80
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 132
BstSCI	CCNGG	1 cut(s)	260
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	148
BtsI	GCAGTG	2 cut(s)	115, 255
BtsIMutI	CAGTG	2 cut(s)	115, 255
Cac8I	GCNNGC	1 cut(s)	121
CviJI	RGCY	7 cut(s)	56, 165, 180, 212, 229, 234, 250
CviKI_1	RGCY	7 cut(s)	56, 165, 180, 212, 229, 234, 250
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	1 cut(s)	82
DpnII	GATC	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
FaiI	YATR	1 cut(s)	161
FaqI	GGGAC	1 cut(s)	131
FauI	CCCGC	1 cut(s)	128
Fnu4HI	GCNGC	2 cut(s)	97, 124
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	2 cut(s)	97, 124
FspBI	CTAG	1 cut(s)	78
GluI	GCNGC	2 cut(s)	97, 124
GsaI	CCCAGC	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	1 cut(s)	261
HindIII	AAGCTT	1 cut(s)	163
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	261
Hpy188III	TCNNGA	3 cut(s)	78, 196, 206
Hpy99I	CGWCG	1 cut(s)	224
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4V	TGCA	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 132
HpyF3I	CTNAG	1 cut(s)	243
Kzo9I	GATC	1 cut(s)	80
LpnPI	CCDG	5 cut(s)	162, 181, 191, 244, 274
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	1 cut(s)	82
MboI	GATC	1 cut(s)	80
MboII	GAAGA	4 cut(s)	55, 75, 277, 280
MflI	RGATCY	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	8 cut(s)	39, 46, 58, 82, 85, 121, 202, 261
MspA1I	CMGCKG	2 cut(s)	62, 123
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	262
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	105, 132
NciI	CCSGG	1 cut(s)	262
NdeII	GATC	1 cut(s)	80
NmuCI	GTSAC	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	1 cut(s)	281
PkrI	GCNGC	2 cut(s)	98, 125
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	80
SatI	GCNGC	2 cut(s)	97, 124
Sau3AI	GATC	1 cut(s)	80
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	262
SetI	ASST	3 cut(s)	10, 38, 167
SfaNI	GCATC	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
SsiI	CCGC	3 cut(s)	62, 96, 121
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	173
TaqI	TCGA	4 cut(s)	23, 222, 275, 284
TauI	GCSGC	1 cut(s)	99
TscAI	CASTG	2 cut(s)	115, 262
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	32
TspRI	CASTG	2 cut(s)	115, 262
XbaI	TCTAGA	1 cut(s)	77
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.