Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000178.1

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Reverse (-)

45663 .. 47039

Gene Structure 1377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000178.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atgggaagcgggtcaatcaaatcgaacccaacaaggtcgaggaagagggtggaggccacggcggaggactcggctgggccttctctccttcgcggcaaagatggcagtgcttttgccagatgcgatgggtgccaaaagaatgtcccagtggcgctcataagctttcacaattgtagccttgatgccaaaatcaagaccaacctggaggctcaagtcgtggaaaagcccagtgaagtgactaagaagcctcccacggagaggaagaaatcgtcacaaccaaatgccaagagagccaagactgacaaagtgaacaagagcaaggatccaaatgcacccaagcgccctctcactgccttcttccttttcatgaatgattttaggaaagcctacaaggaagctaatcctgattccaagggtgttaagatggttgcaaaggagggtggtgaaaagtggaatcttatgactgatgaggagaagaagccttatatggacaaagctgctgagcttaaagatgagtacaaaaagaccttagagactgaagctgatgatgctgaaggtgaggctgaagatgtttcagaaaagcaagtcccagagaaggaagtagaggaagcttcagaaaaggaagtggaggaagcatcagatggggagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

216

Amino Acids

23.89

Weight (kDa)

5.82

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	129
AccII	CGCG	1 cut(s)	93
AciI	CCGC	3 cut(s)	9, 62, 93
AclWI	GGATC	2 cut(s)	317, 330
AcuI	CTGAAG	4 cut(s)	558, 573, 585, 597
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	2 cut(s)	258, 595
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	6 cut(s)	162, 398, 497, 505, 542, 611
AluI	AGCT	6 cut(s)	162, 398, 497, 505, 542, 611
Alw26I	GTCTC	1 cut(s)	527
AlwI	GGATC	2 cut(s)	317, 330
AoxI	GGCC	2 cut(s)	54, 77
ApeKI	GCWGC	1 cut(s)	497
AspLEI	GCGC	2 cut(s)	154, 342
AspS9I	GGNCC	1 cut(s)	77
AsuHPI	GGTGA	2 cut(s)	455, 569
BamHI	GGATCC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	4 cut(s)	95, 119, 418, 635
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	527
BfoI	RGCGCY	2 cut(s)	155, 343
BisI	GCNGC	2 cut(s)	94, 498
BlpI	GCTNAGC	1 cut(s)	501
BlsI	GCNGC	2 cut(s)	95, 499
Bme1390I	CCNGG	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	131, 324
BmrFI	CCNGG	1 cut(s)	203
BmrI	ACTGGG	2 cut(s)	140, 222
BmsI	GCATC	4 cut(s)	110, 172, 538, 644
BmuI	ACTGGG	2 cut(s)	140, 222
BpmI	CTGGAG	1 cut(s)	224
Bpu1102I	GCTNAGC	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	195
BsaJI	CCNNGG	3 cut(s)	57, 252, 411
Bsc4I	CCNNNNNNNGG	2 cut(s)	258, 595
Bse1I	ACTGG	2 cut(s)	146, 228
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	3 cut(s)	57, 252, 411
BseLI	CCNNNNNNNGG	2 cut(s)	258, 595
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	2 cut(s)	146, 228
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	1 cut(s)	484
BseYI	CCCAGC	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	56, 79
BshNI	GGYRCC	1 cut(s)	129
BslFI	GGGAC	2 cut(s)	128, 572
BslI	CCNNNNNNNGG	2 cut(s)	258, 595
BsmAI	GTCTC	1 cut(s)	527
BsmFI	GGGAC	2 cut(s)	128, 572
BsnI	GGCC	2 cut(s)	56, 79
Bsp143I	GATC	1 cut(s)	322
Bsp1720I	GCTNAGC	1 cut(s)	501
BspACI	CCGC	3 cut(s)	9, 62, 93
BspANI	GGCC	2 cut(s)	56, 79
BspCNI	CTCAG	1 cut(s)	493
BspFNI	CGCG	1 cut(s)	93
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	131, 324
BspPI	GGATC	2 cut(s)	317, 330
BspT107I	GGYRCC	1 cut(s)	129
BsrI	ACTGG	2 cut(s)	146, 228
BssECI	CCNNGG	3 cut(s)	57, 252, 411
BssMI	GATC	1 cut(s)	322
BssT1I	CCWWGG	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	38
BstDEI	CTNAG	3 cut(s)	240, 501, 529
BstDSI	CCRYGG	2 cut(s)	57, 252
BstFNI	CGCG	1 cut(s)	93
BstH2I	RGCGCY	2 cut(s)	155, 343
BstHHI	GCGC	2 cut(s)	154, 342
BstKTI	GATC	1 cut(s)	325
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 129, 290, 548
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	484
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuRI	GGCC	2 cut(s)	56, 79
BtgI	CCRYGG	2 cut(s)	57, 252
BtgZI	GCGATG	1 cut(s)	138
BtsI	GCAGTG	2 cut(s)	112, 348
BtsIMutI	CAGTG	4 cut(s)	112, 153, 235, 348
CciI	TCATGA	1 cut(s)	366
CfoI	GCGC	2 cut(s)	154, 342
Cfr13I	GGNCC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	1 cut(s)	367
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	3 cut(s)	240, 501, 529
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	411
Eco57I	CTGAAG	4 cut(s)	558, 573, 585, 597
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	1 cut(s)	370
FaiI	YATR	5 cut(s)	158, 368, 461, 486, 488
FaqI	GGGAC	2 cut(s)	128, 572
FatI	CATG	1 cut(s)	366
FauI	CCCGC	1 cut(s)	2
Fnu4HI	GCNGC	2 cut(s)	94, 498
Fsp4HI	GCNGC	2 cut(s)	94, 498
GlaI	GCGC	2 cut(s)	153, 341
GluI	GCNGC	2 cut(s)	94, 498
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	224
HaeII	RGCGCY	2 cut(s)	155, 343
HaeIII	GGCC	2 cut(s)	56, 79
HhaI	GCGC	2 cut(s)	154, 342
Hin1II	CATG	1 cut(s)	370
Hin6I	GCGC	2 cut(s)	152, 340
HinP1I	GCGC	2 cut(s)	152, 340
HindIII	AAGCTT	2 cut(s)	160, 609
HinfI	GANTC	3 cut(s)	68, 407, 454
HphI	GGTGA	2 cut(s)	455, 569
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	3 cut(s)	577, 616, 640
Hpy188III	TCNNGA	3 cut(s)	193, 367, 404
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	5 cut(s)	90, 98, 364, 548, 589
HpyCH4V	TGCA	2 cut(s)	332, 431
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 129, 290, 548
HpyF3I	CTNAG	3 cut(s)	240, 501, 529
Hsp92II	CATG	1 cut(s)	370
HspAI	GCGC	2 cut(s)	152, 340
Kzo9I	GATC	1 cut(s)	322
LpnPI	CCDG	8 cut(s)	60, 130, 159, 188, 215, 241, 417, 603
Lsp1109I	GCAGC	1 cut(s)	484
LweI	GCATC	4 cut(s)	110, 172, 538, 644
MaeIII	GTNAC	2 cut(s)	235, 270
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	5 cut(s)	55, 274, 349, 487, 578
MfeI	CAATTG	1 cut(s)	169
MflI	RGATCY	1 cut(s)	322
MluCI	AATT	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	62
MseI	TTAA	2 cut(s)	420, 507
MspR9I	CCNGG	1 cut(s)	203
MunI	CAATTG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	203
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	4 cut(s)	102, 129, 290, 548
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	1 cut(s)	370
NlaIV	GGNNCC	2 cut(s)	131, 324
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	2 cut(s)	235, 270
PagI	TCATGA	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	407, 454
PkrI	GCNGC	2 cut(s)	95, 499
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	201
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	131, 324
PspPI	GGNCC	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
SaqAI	TTAA	2 cut(s)	420, 507
SatI	GCNGC	2 cut(s)	94, 498
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	203
SfaNI	GCATC	4 cut(s)	110, 172, 538, 644
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	3 cut(s)	9, 62, 93
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	411
TaqI	TCGA	2 cut(s)	23, 38
TasI	AATT	1 cut(s)	169
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	2 cut(s)	407, 454
Tru1I	TTAA	2 cut(s)	420, 507
Tru9I	TTAA	2 cut(s)	420, 507
TscAI	CASTG	4 cut(s)	112, 153, 235, 355
TseFI	GTSAC	2 cut(s)	235, 270
TseI	GCWGC	1 cut(s)	497
Tsp45I	GTSAC	2 cut(s)	235, 270
TspDTI	ATGAA	2 cut(s)	355, 383
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	4 cut(s)	112, 153, 235, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.