Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Reverse (-)

13954748 .. 13957229

Gene Structure 2482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017187

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGTTGAAAGAGGAGGCGGCGCCGATGTTGAGCGTGGAGGCTTCTGCCACAAGTTCGGAGGTGACCCTGGTCGCAGCGGTAAGCGCCGCGGTGCTGGGCCTGAGAGAATCATGAAGATCATGCCGGTTCAGAAGCAAACCGTTTTGGTTGGAGGACTCGCTTCTTCTGTTCCTCTATCTCGTCCATGTTCCCCAACCCCCGTTGGCCGTCCCACAAGATCTTCAACAAGACGTCGTGGACCGACTTCGATTGCTGCAAAATCCCGCCAGGAGGAAAGACATGAGGCACGATTCTTAATGAGCAATGGGTGCCAAAAGGATGTCCCAGTGGCGCTTATAAGCTTTCACAATTGTAGCCTTGGTGCCAAAATCAAGACCAACCTGGATCAAATAAAGGCATCACCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

137

Amino Acids

14.52

Weight (kDa)

10.89

Isoelectric Point (pI)

68.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	338
AatII	GACGTC	1 cut(s)	235
AccB1I	GGYRCC	3 cut(s)	20, 309, 362
AccII	CGCG	1 cut(s)	90
AciI	CCGC	5 cut(s)	18, 78, 88, 90, 265
AclWI	GGATC	1 cut(s)	393
AcoI	YGGCCR	1 cut(s)	205
AcyI	GRCGYC	2 cut(s)	21, 232
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgsI	TTSAA	2 cut(s)	8, 225
AjnI	CCWGG	3 cut(s)	67, 267, 381
AluBI	AGCT	2 cut(s)	342, 407
AluI	AGCT	2 cut(s)	342, 407
AlwI	GGATC	1 cut(s)	393
AoxI	GGCC	2 cut(s)	98, 205
ApeKI	GCWGC	2 cut(s)	75, 254
AspLEI	GCGC	3 cut(s)	23, 87, 334
AspS9I	GGNCC	2 cut(s)	98, 239
AsuHPI	GGTGA	2 cut(s)	74, 393
AvaII	GGWCC	1 cut(s)	239
BanI	GGYRCC	3 cut(s)	20, 309, 362
BbvI	GCAGC	2 cut(s)	87, 241
BceAI	ACGGC	1 cut(s)	192
BciT130I	CCWGG	3 cut(s)	69, 269, 383
BfoI	RGCGCY	3 cut(s)	24, 88, 335
BglII	AGATCT	1 cut(s)	218
BisI	GCNGC	4 cut(s)	19, 76, 88, 255
BlsI	GCNGC	4 cut(s)	20, 77, 89, 256
Bme1390I	CCNGG	3 cut(s)	69, 269, 383
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	2 cut(s)	98, 239
BmiI	GGNNCC	3 cut(s)	22, 311, 364
BmrFI	CCNGG	3 cut(s)	69, 269, 383
BmrI	ACTGGG	1 cut(s)	320
BmsI	GCATC	1 cut(s)	407
BmuI	ACTGGG	1 cut(s)	320
BoxI	GACNNNNGTC	1 cut(s)	69
BsaHI	GRCGYC	2 cut(s)	21, 232
BsaJI	CCNNGG	3 cut(s)	67, 88, 358
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	310
BseBI	CCWGG	3 cut(s)	69, 269, 383
BseDI	CCNNGG	3 cut(s)	67, 88, 358
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	87, 241
BseYI	CCCAGC	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	100, 207
BshNI	GGYRCC	3 cut(s)	20, 309, 362
BsiSI	CCGG	1 cut(s)	125
BslFI	GGGAC	2 cut(s)	195, 308
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmFI	GGGAC	2 cut(s)	195, 308
BsnI	GGCC	2 cut(s)	100, 207
Bsp143I	GATC	3 cut(s)	117, 218, 385
BspACI	CCGC	5 cut(s)	18, 78, 88, 90, 265
BspANI	GGCC	2 cut(s)	100, 207
BspCNI	CTCAG	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	90
BspHI	TCATGA	1 cut(s)	111
BspLI	GGNNCC	3 cut(s)	22, 311, 364
BspPI	GGATC	1 cut(s)	393
BspT107I	GGYRCC	3 cut(s)	20, 309, 362
BsrDI	GCAATG	1 cut(s)	310
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	3 cut(s)	67, 88, 358
BssMI	GATC	3 cut(s)	117, 218, 385
BssNI	GRCGYC	2 cut(s)	21, 232
BssT1I	CCWWGG	1 cut(s)	358
Bst2UI	CCWGG	3 cut(s)	69, 269, 383
Bst4CI	ACNGT	1 cut(s)	142
BstACI	GRCGYC	2 cut(s)	21, 232
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	88
BstEII	GGTNACC	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	325
BstFNI	CGCG	1 cut(s)	90
BstH2I	RGCGCY	3 cut(s)	24, 88, 335
BstHHI	GCGC	3 cut(s)	23, 87, 334
BstKTI	GATC	3 cut(s)	120, 221, 388
BstMBI	GATC	3 cut(s)	117, 218, 385
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 309, 404
BstNI	CCWGG	3 cut(s)	69, 269, 383
BstPAI	GACNNNNGTC	1 cut(s)	69
BstPI	GGTNACC	1 cut(s)	62
BstSCI	CCNGG	3 cut(s)	67, 267, 381
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	87, 241
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	100, 207
BtgI	CCRYGG	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	333
CciI	TCATGA	1 cut(s)	111
CfoI	GCGC	3 cut(s)	23, 87, 334
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	98, 239
Cfr42I	CCGCGG	1 cut(s)	91
CviAII	CATG	4 cut(s)	112, 121, 186, 281
CviJI	RGCY	6 cut(s)	42, 100, 207, 342, 357, 407
CviKI_1	RGCY	6 cut(s)	42, 100, 207, 342, 357, 407
DdeI	CTNAG	1 cut(s)	102
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	3 cut(s)	119, 220, 387
DpnII	GATC	3 cut(s)	117, 218, 385
EaeI	YGGCCR	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	239
Eco91I	GGTNACC	1 cut(s)	62
EcoO65I	GGTNACC	1 cut(s)	62
EcoRII	CCWGG	3 cut(s)	67, 267, 381
EcoT14I	CCWWGG	1 cut(s)	358
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	358
FaeI	CATG	4 cut(s)	115, 124, 189, 284
FaiI	YATR	5 cut(s)	113, 122, 187, 282, 338
FaqI	GGGAC	2 cut(s)	195, 308
FatI	CATG	4 cut(s)	111, 120, 185, 280
FauI	CCCGC	1 cut(s)	272
Fnu4HI	GCNGC	4 cut(s)	19, 76, 88, 255
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	4 cut(s)	19, 76, 88, 255
GlaI	GCGC	3 cut(s)	22, 86, 333
GluI	GCNGC	4 cut(s)	19, 76, 88, 255
GsaI	CCCAGC	1 cut(s)	99
HaeII	RGCGCY	3 cut(s)	24, 88, 335
HaeIII	GGCC	2 cut(s)	100, 207
HapII	CCGG	1 cut(s)	125
HhaI	GCGC	3 cut(s)	23, 87, 334
Hin1I	GRCGYC	2 cut(s)	21, 232
Hin1II	CATG	4 cut(s)	115, 124, 189, 284
Hin6I	GCGC	3 cut(s)	21, 85, 332
HinP1I	GCGC	3 cut(s)	21, 85, 332
HindIII	AAGCTT	1 cut(s)	340
HinfI	GANTC	3 cut(s)	108, 156, 291
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	2 cut(s)	74, 393
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	2 cut(s)	59, 132
Hpy188III	TCNNGA	2 cut(s)	112, 373
Hpy8I	GTNNAC	1 cut(s)	239
Hpy99I	CGWCG	1 cut(s)	237
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 309, 404
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	1 cut(s)	232
Hsp92I	GRCGYC	2 cut(s)	21, 232
Hsp92II	CATG	4 cut(s)	115, 124, 189, 284
HspAI	GCGC	3 cut(s)	21, 85, 332
KasI	GGCGCC	1 cut(s)	20
KspI	CCGCGG	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	117, 218, 385
Lsp1109I	GCAGC	2 cut(s)	87, 241
LweI	GCATC	1 cut(s)	407
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	3 cut(s)	119, 220, 387
MboI	GATC	3 cut(s)	117, 218, 385
MboII	GAAGA	3 cut(s)	127, 156, 213
MfeI	CAATTG	1 cut(s)	349
MflI	RGATCY	1 cut(s)	218
MluCI	AATT	1 cut(s)	349
Mly113I	GGCGCC	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	8 cut(s)	5, 8, 32, 53, 146, 183, 265, 277
MseI	TTAA	1 cut(s)	296
MspA1I	CMGCKG	2 cut(s)	78, 90
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	3 cut(s)	69, 269, 383
MunI	CAATTG	1 cut(s)	349
MvaI	CCWGG	3 cut(s)	69, 269, 383
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	3 cut(s)	84, 309, 404
NarI	GGCGCC	1 cut(s)	21
NdeII	GATC	3 cut(s)	117, 218, 385
NlaIII	CATG	4 cut(s)	115, 124, 189, 284
NlaIV	GGNNCC	3 cut(s)	22, 311, 364
NmuCI	GTSAC	1 cut(s)	62
PagI	TCATGA	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	108, 291
PkrI	GCNGC	4 cut(s)	20, 77, 89, 256
PleI	GAGTC	1 cut(s)	150
PluTI	GGCGCC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	150
PshAI	GACNNNNGTC	1 cut(s)	69
PsiI	TTATAA	1 cut(s)	338
Psp6I	CCWGG	3 cut(s)	67, 267, 381
PspEI	GGTNACC	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	95
PspGI	CCWGG	3 cut(s)	67, 267, 381
PspN4I	GGNNCC	3 cut(s)	22, 311, 364
PspPI	GGNCC	2 cut(s)	98, 239
PsuI	RGATCY	1 cut(s)	218
SacII	CCGCGG	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	4 cut(s)	19, 76, 88, 255
Sau3AI	GATC	3 cut(s)	117, 218, 385
Sau96I	GGNCC	2 cut(s)	98, 239
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	3 cut(s)	69, 269, 383
SetI	ASST	5 cut(s)	64, 235, 344, 384, 409
SfaNI	GCATC	1 cut(s)	407
SfoI	GGCGCC	1 cut(s)	22
Sfr303I	CCGCGG	1 cut(s)	91
SgrBI	CCGCGG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	239
Sse9I	AATT	1 cut(s)	349
SsiI	CCGC	5 cut(s)	18, 78, 88, 90, 265
SspDI	GGCGCC	1 cut(s)	20
StyD4I	CCNGG	3 cut(s)	67, 267, 381
StyI	CCWWGG	1 cut(s)	358
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	1 cut(s)	248
TaqII	GACCGA	1 cut(s)	256
TasI	AATT	1 cut(s)	349
TauI	GCSGC	2 cut(s)	21, 90
TfiI	GAWTC	2 cut(s)	108, 291
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	2 cut(s)	75, 254
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	333
VpaK11BI	GGWCC	1 cut(s)	239
ZraI	GACGTC	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.