Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Reverse (-)

238832 .. 240316

Gene Structure 1485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005605

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGAAGCGGGTCAGTCAAATCGAACCCAACAAGGTCGAGGAAGAGGGTGGAGGCCACGGCGGAGTACTCGACCGGGCCTTCTCTCCTTCGCGGCAAAGATGGCAGTGCTTTTGCCAGATGCGATGGGTGCCAAAAGAATGTCCCGGTGGCGCTCATAAGCTTTCACAATTGTAGCCTCGATGCCAAAATCAAGACCAACCTGGAGGCTCAAGTCGTGGAAAAGCCCAGTGAAGTGACTAAGAAGCCTCCCACAGAGAGGAAGAAATCCAGTACATCATCAGAACCAAATGCCAAGAGAGCCAAGACTGACAAAGCCAAGAAGAGCAAGGATCCAAATGCACCCAAGCGCCCTCTCACTGCCTTCTTCCTTTTCATGAATGATTTTAGGAAAGCCTACAAGGAAGCTAATCCTGATTCCAAGGGTGTTAAGACGGTTGCAAAGGAGGGTGGTGAAAAGTGGAAACTTATGACTGATGAGGAGAAGAAGCCTTATGTGGAAAAAGCTGCTGAGCTTAAAGATGAGTTCAAAAAGACCTTAGACACTGAAGCTGATGATGCTGAAGGTGAAGCTGAAGATGTTTCAGAAAAGGAAGTGCCAGAGAAGGCAGTAGAGGAAGCTTCAGAAAAGGAAGTAGAGGAAGCTTCAGAAAAGGAAGCACCAGAGAAGGAAGTGGAGGAAGCATCAGATGGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

233

Amino Acids

25.55

Weight (kDa)

5.53

Isoelectric Point (pI)

34.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	112 - 180	4e-14	HMG-box domain
HMG_box	PF00505	115 - 179	2.5e-19	HMG (high mobility group) box
HMG_WDHD1	PF24815	118 - 168	4.2e-15	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	129
AccII	CGCG	1 cut(s)	93
AciI	CCGC	3 cut(s)	9, 62, 93
AclWI	GGATC	2 cut(s)	326, 339
AcuI	CTGAAG	5 cut(s)	567, 582, 594, 606, 630
AfaI	GTAC	2 cut(s)	68, 274
AfiI	CCNNNNNNNGG	1 cut(s)	258
AgsI	TTSAA	1 cut(s)	529
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	8 cut(s)	162, 407, 506, 514, 551, 572, 620, 644
AluI	AGCT	8 cut(s)	162, 407, 506, 514, 551, 572, 620, 644
AlwI	GGATC	2 cut(s)	326, 339
AoxI	GGCC	2 cut(s)	54, 77
ApeKI	GCWGC	1 cut(s)	506
AspLEI	GCGC	2 cut(s)	154, 351
AspS9I	GGNCC	1 cut(s)	77
AsuC2I	CCSGG	2 cut(s)	76, 146
AsuHPI	GGTGA	2 cut(s)	464, 578
BamHI	GGATCC	1 cut(s)	331
BanI	GGYRCC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	493
BccI	CCATC	3 cut(s)	95, 119, 683
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	203
BcnI	CCSGG	2 cut(s)	76, 146
BfoI	RGCGCY	2 cut(s)	155, 352
BisI	GCNGC	2 cut(s)	94, 507
BlpI	GCTNAGC	1 cut(s)	510
BlsI	GCNGC	2 cut(s)	95, 508
BmcAI	AGTACT	1 cut(s)	68
Bme1390I	CCNGG	3 cut(s)	76, 146, 203
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	131, 333
BmrFI	CCNGG	3 cut(s)	76, 146, 203
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	4 cut(s)	110, 172, 547, 692
BmuI	ACTGGG	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	224
Bpu1102I	GCTNAGC	1 cut(s)	510
BpuEI	CTTGAG	1 cut(s)	195
BpuMI	CCSGG	2 cut(s)	76, 146
BsaJI	CCNNGG	2 cut(s)	57, 420
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse1I	ACTGG	2 cut(s)	228, 270
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	2 cut(s)	57, 420
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	2 cut(s)	228, 270
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	1 cut(s)	493
Bsh1236I	CGCG	1 cut(s)	93
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	56, 79
BshNI	GGYRCC	1 cut(s)	129
BsiEI	CGRYCG	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	75, 146
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	2 cut(s)	56, 79
Bsp143I	GATC	1 cut(s)	331
Bsp1720I	GCTNAGC	1 cut(s)	510
BspACI	CCGC	3 cut(s)	9, 62, 93
BspANI	GGCC	2 cut(s)	56, 79
BspCNI	CTCAG	1 cut(s)	502
BspFNI	CGCG	1 cut(s)	93
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	2 cut(s)	131, 333
BspPI	GGATC	2 cut(s)	326, 339
BspQI	GCTCTTC	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	129
BsrI	ACTGG	2 cut(s)	228, 270
BssECI	CCNNGG	2 cut(s)	57, 420
BssMI	GATC	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	436
Bst6I	CTCTTC	2 cut(s)	38, 317
BstDEI	CTNAG	3 cut(s)	240, 510, 538
BstDSI	CCRYGG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	93
BstH2I	RGCGCY	2 cut(s)	155, 352
BstHHI	GCGC	2 cut(s)	154, 351
BstKTI	GATC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	331
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 129, 299, 557
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	3 cut(s)	74, 144, 201
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	493
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	56, 79
BtgI	CCRYGG	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	138
BtsI	GCAGTG	2 cut(s)	112, 357
BtsIMutI	CAGTG	4 cut(s)	112, 235, 357, 543
CciI	TCATGA	1 cut(s)	375
CfoI	GCGC	2 cut(s)	154, 351
Cfr13I	GGNCC	1 cut(s)	77
Csp6I	GTAC	2 cut(s)	67, 273
CviAII	CATG	1 cut(s)	376
CviQI	GTAC	2 cut(s)	67, 273
DdeI	CTNAG	3 cut(s)	240, 510, 538
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
Eam1104I	CTCTTC	2 cut(s)	38, 317
EarI	CTCTTC	2 cut(s)	38, 317
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	420
Eco57I	CTGAAG	5 cut(s)	567, 582, 594, 606, 630
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	1 cut(s)	379
FaiI	YATR	4 cut(s)	158, 377, 470, 495
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	1 cut(s)	375
FauI	CCCGC	1 cut(s)	2
Fnu4HI	GCNGC	2 cut(s)	94, 507
Fsp4HI	GCNGC	2 cut(s)	94, 507
GlaI	GCGC	2 cut(s)	153, 350
GluI	GCNGC	2 cut(s)	94, 507
GsuI	CTGGAG	1 cut(s)	224
HaeII	RGCGCY	2 cut(s)	155, 352
HaeIII	GGCC	2 cut(s)	56, 79
HapII	CCGG	2 cut(s)	75, 146
HhaI	GCGC	2 cut(s)	154, 351
Hin1II	CATG	1 cut(s)	379
Hin6I	GCGC	2 cut(s)	152, 349
HinP1I	GCGC	2 cut(s)	152, 349
HindIII	AAGCTT	3 cut(s)	160, 618, 642
HinfI	GANTC	1 cut(s)	416
HpaII	CCGG	2 cut(s)	75, 146
HphI	GGTGA	2 cut(s)	464, 578
Hpy188I	TCNGA	5 cut(s)	283, 586, 625, 649, 688
Hpy188III	TCNNGA	3 cut(s)	193, 376, 413
HpyAV	CCTTC	6 cut(s)	90, 98, 373, 557, 598, 661
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4V	TGCA	2 cut(s)	341, 440
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 129, 299, 557
HpyF3I	CTNAG	3 cut(s)	240, 510, 538
Hsp92II	CATG	1 cut(s)	379
HspAI	GCGC	2 cut(s)	152, 349
Kzo9I	GATC	1 cut(s)	331
LguI	GCTCTTC	1 cut(s)	317
Lsp1109I	GCAGC	1 cut(s)	493
LweI	GCATC	4 cut(s)	110, 172, 547, 692
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	6 cut(s)	55, 274, 334, 358, 496, 587
MfeI	CAATTG	1 cut(s)	169
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	1 cut(s)	169
MseI	TTAA	2 cut(s)	429, 516
MspI	CCGG	2 cut(s)	75, 146
MspR9I	CCNGG	3 cut(s)	76, 146, 203
MunI	CAATTG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	203
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	4 cut(s)	102, 129, 299, 557
NciI	CCSGG	2 cut(s)	76, 146
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	2 cut(s)	131, 333
NmuCI	GTSAC	1 cut(s)	235
PagI	TCATGA	1 cut(s)	375
PciSI	GCTCTTC	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	416
PkrI	GCNGC	2 cut(s)	95, 508
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	131, 333
PspPI	GGNCC	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	2 cut(s)	68, 274
RsaNI	GTAC	2 cut(s)	67, 273
SapI	GCTCTTC	1 cut(s)	317
SaqAI	TTAA	2 cut(s)	429, 516
SatI	GCNGC	2 cut(s)	94, 507
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	1 cut(s)	77
ScaI	AGTACT	1 cut(s)	68
ScrFI	CCNGG	3 cut(s)	76, 146, 203
SfaNI	GCATC	4 cut(s)	110, 172, 547, 692
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	3 cut(s)	9, 62, 93
StyD4I	CCNGG	3 cut(s)	74, 144, 201
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	1 cut(s)	436
TaqI	TCGA	4 cut(s)	23, 38, 71, 180
TasI	AATT	1 cut(s)	169
TatI	WGTACW	2 cut(s)	66, 272
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	2 cut(s)	429, 516
Tru9I	TTAA	2 cut(s)	429, 516
TscAI	CASTG	4 cut(s)	112, 235, 364, 550
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	506
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	364, 392
TspRI	CASTG	4 cut(s)	112, 235, 364, 550
ZrmI	AGTACT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.