Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Forward (+)

37226508 .. 37227940

Gene Structure 1433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00357540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTTCTTCGTCCTTGAGACCTTCGTCGACGACAACGACGGCGGCCGCGGCGAACAATGGCGGAGGCTGGAAGTTCCGAGAGGCAACAACTCCATCTTGTTCGGTAAACGACGTCGTCTGTTTGATCCAAGCGGCATCTTCCTCGACTTCATGGTTGAAAGAGGAGGCGGCGCCGATGTTGAGCGTGGAGGCTTACGCCACGAGGTTCGGAGGTGACCGTGGTCGCGGCGGTAGGCGCCGCGGTCTTGGGCTTGAGAGAATCATGAAGATCATGCCGGTTCGAAGCAAACCATTTTTGTTAGAGGACCCGCTTCTTCGTGAGACGGCTATCAAGGAGGAAATACATGAGGCACGGCGCGCTAAAAAGGAATTGAAGGGACTTTACGGGGCTGAAGCGCAGCATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.72

Weight (kDa)

9.69

Isoelectric Point (pI)

58.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	117
AccB1I	GGYRCC	2 cut(s)	172, 237
AccI	GTMKAC	1 cut(s)	29
AccII	CGCG	4 cut(s)	50, 228, 243, 360
AclWI	GGATC	1 cut(s)	121
AcoI	YGGCCR	1 cut(s)	45
AcyI	GRCGYC	3 cut(s)	114, 173, 238
AgsI	TTSAA	2 cut(s)	160, 376
Alw26I	GTCTC	2 cut(s)	13, 317
AlwI	GGATC	1 cut(s)	121
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	400
AspLEI	GCGC	5 cut(s)	175, 240, 360, 362, 400
AspS9I	GGNCC	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	227
AsuII	TTCGAA	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	307
BanI	GGYRCC	2 cut(s)	172, 237
BarI	GAAGNNNNNNTAC	2 cut(s)	368, 400
BauI	CACGAG	1 cut(s)	202
BccI	CCATC	1 cut(s)	103
BceAI	ACGGC	3 cut(s)	57, 342, 371
BcgI	CGANNNNNNTGC	2 cut(s)	126, 160
BcoDI	GTCTC	2 cut(s)	13, 317
BfoI	RGCGCY	2 cut(s)	176, 241
BisI	GCNGC	8 cut(s)	45, 48, 51, 135, 171, 229, 241, 401
BlsI	GCNGC	8 cut(s)	46, 49, 52, 136, 172, 230, 242, 402
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	3 cut(s)	174, 239, 309
BmsI	GCATC	1 cut(s)	146
BoxI	GACNNNNGTC	2 cut(s)	25, 222
Bpu14I	TTCGAA	1 cut(s)	283
BpuEI	CTTGAG	2 cut(s)	37, 275
BsaHI	GRCGYC	3 cut(s)	114, 173, 238
BsaI	GGTCTC	1 cut(s)	13
BsaJI	CCNNGG	3 cut(s)	48, 220, 241
Bse118I	RCCGGY	1 cut(s)	277
BseDI	CCNNGG	3 cut(s)	48, 220, 241
BsePI	GCGCGC	1 cut(s)	358
BseRI	GAGGAG	1 cut(s)	179
BseX3I	CGGCCG	1 cut(s)	45
Bsh1236I	CGCG	4 cut(s)	50, 228, 243, 360
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	47
BshNI	GGYRCC	2 cut(s)	172, 237
BsiEI	CGRYCG	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	393
BsmAI	GTCTC	2 cut(s)	13, 317
BsmBI	CGTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	393
BsnI	GGCC	1 cut(s)	47
Bso31I	GGTCTC	1 cut(s)	13
Bsp119I	TTCGAA	1 cut(s)	283
Bsp143I	GATC	2 cut(s)	126, 270
BspANI	GGCC	1 cut(s)	47
BspFNI	CGCG	4 cut(s)	50, 228, 243, 360
BspHI	TCATGA	1 cut(s)	264
BspLI	GGNNCC	3 cut(s)	174, 239, 309
BspPI	GGATC	1 cut(s)	121
BspT104I	TTCGAA	1 cut(s)	283
BspT107I	GGYRCC	2 cut(s)	172, 237
BspTNI	GGTCTC	1 cut(s)	13
BsrFI	RCCGGY	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	3 cut(s)	48, 220, 241
BssHII	GCGCGC	1 cut(s)	358
BssMI	GATC	2 cut(s)	126, 270
BssNI	GRCGYC	3 cut(s)	114, 173, 238
BssSI	CACGAG	1 cut(s)	202
Bst2BI	CACGAG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	221
BstACI	GRCGYC	3 cut(s)	114, 173, 238
BstBI	TTCGAA	1 cut(s)	283
BstC8I	GCNNGC	2 cut(s)	360, 405
BstDEI	CTNAG	1 cut(s)	408
BstDSI	CCRYGG	3 cut(s)	48, 220, 241
BstEII	GGTNACC	1 cut(s)	215
BstFNI	CGCG	4 cut(s)	50, 228, 243, 360
BstH2I	RGCGCY	2 cut(s)	176, 241
BstHHI	GCGC	5 cut(s)	175, 240, 360, 362, 400
BstKTI	GATC	2 cut(s)	129, 273
BstMAI	GTCTC	2 cut(s)	13, 317
BstMBI	GATC	2 cut(s)	126, 270
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 237, 359, 404
BstNSI	RCATGY	1 cut(s)	407
BstPAI	GACNNNNGTC	2 cut(s)	25, 222
BstPI	GGTNACC	1 cut(s)	215
BstUI	CGCG	4 cut(s)	50, 228, 243, 360
BstZI	CGGCCG	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	47
BtgI	CCRYGG	3 cut(s)	48, 220, 241
Cac8I	GCNNGC	2 cut(s)	360, 405
CciI	TCATGA	1 cut(s)	264
CciNI	GCGGCCGC	1 cut(s)	45
CfoI	GCGC	5 cut(s)	175, 240, 360, 362, 400
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	307
Cfr42I	CCGCGG	2 cut(s)	51, 244
CviAII	CATG	5 cut(s)	153, 265, 274, 347, 404
CviJI	RGCY	7 cut(s)	5, 47, 69, 194, 253, 329, 392
CviKI_1	RGCY	7 cut(s)	5, 47, 69, 194, 253, 329, 392
DdeI	CTNAG	1 cut(s)	408
DinI	GGCGCC	2 cut(s)	174, 239
DpnI	GATC	2 cut(s)	128, 272
DpnII	GATC	2 cut(s)	126, 270
EaeI	YGGCCR	1 cut(s)	45
EagI	CGGCCG	1 cut(s)	45
EciI	GGCGGA	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	307
Eco52I	CGGCCG	1 cut(s)	45
Eco91I	GGTNACC	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	307
EcoO65I	GGTNACC	1 cut(s)	215
EgeI	GGCGCC	2 cut(s)	174, 239
EheI	GGCGCC	2 cut(s)	174, 239
Esp3I	CGTCTC	1 cut(s)	317
FaeI	CATG	5 cut(s)	156, 268, 277, 350, 407
FaiI	YATR	5 cut(s)	154, 266, 275, 348, 405
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	5 cut(s)	152, 264, 273, 346, 403
FauI	CCCGC	1 cut(s)	318
FblI	GTMKAC	1 cut(s)	29
Fnu4HI	GCNGC	8 cut(s)	45, 48, 51, 135, 171, 229, 241, 401
Fsp4HI	GCNGC	8 cut(s)	45, 48, 51, 135, 171, 229, 241, 401
GlaI	GCGC	5 cut(s)	174, 239, 359, 361, 399
GluI	GCNGC	8 cut(s)	45, 48, 51, 135, 171, 229, 241, 401
HaeII	RGCGCY	2 cut(s)	176, 241
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	278
HhaI	GCGC	5 cut(s)	175, 240, 360, 362, 400
Hin1I	GRCGYC	3 cut(s)	114, 173, 238
Hin1II	CATG	5 cut(s)	156, 268, 277, 350, 407
Hin6I	GCGC	5 cut(s)	173, 238, 358, 360, 398
HinP1I	GCGC	5 cut(s)	173, 238, 358, 360, 398
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	1 cut(s)	261
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	2 cut(s)	30, 109
Hpy188I	TCNGA	2 cut(s)	80, 212
Hpy188III	TCNNGA	2 cut(s)	265, 320
Hpy8I	GTNNAC	2 cut(s)	30, 109
Hpy99I	CGWCG	5 cut(s)	31, 34, 43, 116, 119
HpyAV	CCTTC	2 cut(s)	33, 370
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 237, 359, 404
HpyF3I	CTNAG	1 cut(s)	408
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	3 cut(s)	114, 173, 238
Hsp92II	CATG	5 cut(s)	156, 268, 277, 350, 407
HspAI	GCGC	5 cut(s)	173, 238, 358, 360, 398
KasI	GGCGCC	2 cut(s)	172, 237
KspI	CCGCGG	2 cut(s)	51, 244
Kzo9I	GATC	2 cut(s)	126, 270
LpnPI	CCDG	2 cut(s)	55, 291
LweI	GCATC	1 cut(s)	146
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	2 cut(s)	128, 272
MboI	GATC	2 cut(s)	126, 270
MboII	GAAGA	3 cut(s)	132, 280, 308
MluCI	AATT	1 cut(s)	371
Mly113I	GGCGCC	2 cut(s)	173, 238
MspA1I	CMGCKG	2 cut(s)	50, 243
MspI	CCGG	1 cut(s)	278
MvnI	CGCG	4 cut(s)	50, 228, 243, 360
MwoI	GCNNNNNNNGC	4 cut(s)	50, 237, 359, 404
NarI	GGCGCC	2 cut(s)	173, 238
NdeII	GATC	2 cut(s)	126, 270
NlaIII	CATG	5 cut(s)	156, 268, 277, 350, 407
NlaIV	GGNNCC	3 cut(s)	174, 239, 309
NmuCI	GTSAC	1 cut(s)	215
NotI	GCGGCCGC	1 cut(s)	45
NspI	RCATGY	1 cut(s)	407
NspV	TTCGAA	1 cut(s)	283
PaeI	GCATGC	1 cut(s)	407
PagI	TCATGA	1 cut(s)	264
PauI	GCGCGC	1 cut(s)	358
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	261
PflFI	GACNNNGTC	1 cut(s)	116
PkrI	GCNGC	8 cut(s)	46, 49, 52, 136, 172, 230, 242, 402
PluTI	GGCGCC	2 cut(s)	176, 241
PpuMI	RGGWCCY	1 cut(s)	307
PshAI	GACNNNNGTC	2 cut(s)	25, 222
Psp5II	RGGWCCY	1 cut(s)	307
PspEI	GGTNACC	1 cut(s)	215
PspN4I	GGNNCC	3 cut(s)	174, 239, 309
PspPI	GGNCC	1 cut(s)	307
PspPPI	RGGWCCY	1 cut(s)	307
PsyI	GACNNNGTC	1 cut(s)	116
PteI	GCGCGC	1 cut(s)	358
SacII	CCGCGG	2 cut(s)	51, 244
SalI	GTCGAC	1 cut(s)	28
SatI	GCNGC	8 cut(s)	45, 48, 51, 135, 171, 229, 241, 401
Sau3AI	GATC	2 cut(s)	126, 270
Sau96I	GGNCC	1 cut(s)	307
SetI	ASST	4 cut(s)	25, 117, 209, 217
SfaNI	GCATC	1 cut(s)	146
SfoI	GGCGCC	2 cut(s)	174, 239
Sfr303I	CCGCGG	2 cut(s)	51, 244
SfuI	TTCGAA	1 cut(s)	283
SgrBI	CCGCGG	2 cut(s)	51, 244
SgrDI	CGTCGACG	1 cut(s)	28
SinI	GGWCC	1 cut(s)	307
SmlI	CTYRAG	2 cut(s)	16, 254
SmoI	CTYRAG	2 cut(s)	16, 254
SphI	GCATGC	1 cut(s)	407
Sse9I	AATT	1 cut(s)	371
SspDI	GGCGCC	2 cut(s)	172, 237
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	3 cut(s)	29, 146, 283
TasI	AATT	1 cut(s)	371
TauI	GCSGC	7 cut(s)	47, 50, 53, 137, 173, 231, 243
TfiI	GAWTC	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	1 cut(s)	400
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	2 cut(s)	141, 281
Tth111I	GACNNNGTC	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	307
XceI	RCATGY	1 cut(s)	407
XmiI	GTMKAC	1 cut(s)	29
ZraI	GACGTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.