Rh7DG482600

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002801
Physical Location & Seq
Forward (+)
68733485 .. 68734279
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG482600.1

Sequence Viewer

Length: 231 bp
ATGTTCCCCAACCCCGGTTGGCCGTCCCACAAGGTCTTCAACAAGACGTCGTGGACCGACTTCGATTACTGCAAAATCCCGCCAGTTGTGTTGGTAAATTTCTATTGGTTCTTTGATGATAACTTGAATATATATCTGAGTGAGGCGGCTATCAAGGAGGAAAGACATGAGGCACGGCGCGCTAAAAAGGAATTGAAGGGACTTTACAGGGGTGAAGCGCAGCATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

76

Amino Acids

9.06

Weight (kDa)

7.88

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 50
AccII CGCG 1 cut(s) 180
AciI CCGC 2 cut(s) 80, 146
AcoI YGGCCR 1 cut(s) 20
AcsI RAATTY 1 cut(s) 97
AcyI GRCGYC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 3 cut(s) 40, 127, 196
AoxI GGCC 1 cut(s) 20
ApeKI GCWGC 1 cut(s) 220
ApoI RAATTY 1 cut(s) 97
AspLEI GCGC 3 cut(s) 180, 182, 220
AspS9I GGNCC 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 224
AvaII GGWCC 1 cut(s) 54
BarI GAAGNNNNNNTAC 2 cut(s) 188, 220
BbsI GAAGAC 1 cut(s) 28
BceAI ACGGC 2 cut(s) 7, 191
BcnI CCSGG 1 cut(s) 15
BisI GCNGC 2 cut(s) 147, 221
BlsI GCNGC 2 cut(s) 148, 222
Bme1390I CCNGG 1 cut(s) 15
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 83
BsePI GCGCGC 1 cut(s) 178
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 15
BslFI GGGAC 2 cut(s) 10, 213
BslI CCNNNNNNNGG 1 cut(s) 14
BsmFI GGGAC 2 cut(s) 10, 213
BsnI GGCC 1 cut(s) 22
BspACI CCGC 2 cut(s) 80, 146
BspANI GGCC 1 cut(s) 22
BspCNI CTCAG 1 cut(s) 129
BspFNI CGCG 1 cut(s) 180
BsrI ACTGG 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 13
BssHII GCGCGC 1 cut(s) 178
BssNI GRCGYC 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 180, 225
BstDEI CTNAG 2 cut(s) 137, 228
BstFNI CGCG 1 cut(s) 180
BstHHI GCGC 3 cut(s) 180, 182, 220
BstMWI GCNNNNNNNGC 2 cut(s) 179, 224
BstNSI RCATGY 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 13
BstUI CGCG 1 cut(s) 180
BstV2I GAAGAC 1 cut(s) 28
BsuRI GGCC 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 180, 225
CfoI GCGC 3 cut(s) 180, 182, 220
Cfr13I GGNCC 1 cut(s) 54
CviAII CATG 2 cut(s) 167, 224
CviJI RGCY 2 cut(s) 22, 149
CviKI_1 RGCY 2 cut(s) 22, 149
DdeI CTNAG 2 cut(s) 137, 228
EaeI YGGCCR 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 54
FaeI CATG 2 cut(s) 170, 227
FaiI YATR 4 cut(s) 131, 133, 168, 225
FaqI GGGAC 2 cut(s) 10, 213
FatI CATG 2 cut(s) 166, 223
FauI CCCGC 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 147, 221
Fsp4HI GCNGC 2 cut(s) 147, 221
GlaI GCGC 3 cut(s) 179, 181, 219
GluI GCNGC 2 cut(s) 147, 221
HaeIII GGCC 1 cut(s) 22
HapII CCGG 1 cut(s) 15
HhaI GCGC 3 cut(s) 180, 182, 220
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 2 cut(s) 170, 227
Hin6I GCGC 3 cut(s) 178, 180, 218
HinP1I GCGC 3 cut(s) 178, 180, 218
HpaII CCGG 1 cut(s) 15
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 1 cut(s) 138
Hpy8I GTNNAC 1 cut(s) 54
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 224
HpyF3I CTNAG 2 cut(s) 137, 228
HpySE526I ACGT 1 cut(s) 47
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 2 cut(s) 170, 227
HspAI GCGC 3 cut(s) 178, 180, 218
LpnPI CCDG 3 cut(s) 28, 96, 193
MaeII ACGT 1 cut(s) 47
MboII GAAGA 1 cut(s) 28
MluCI AATT 2 cut(s) 97, 191
MnlI CCTC 3 cut(s) 136, 151, 163
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 15
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 2 cut(s) 179, 224
NciI CCSGG 1 cut(s) 15
NlaIII CATG 2 cut(s) 170, 227
NspI RCATGY 1 cut(s) 227
PaeI GCATGC 1 cut(s) 227
PauI GCGCGC 1 cut(s) 178
PkrI GCNGC 2 cut(s) 148, 222
PspPI GGNCC 1 cut(s) 54
PteI GCGCGC 1 cut(s) 178
SatI GCNGC 2 cut(s) 147, 221
Sau96I GGNCC 1 cut(s) 54
ScrFI CCNGG 1 cut(s) 15
SetI ASST 2 cut(s) 36, 50
SinI GGWCC 1 cut(s) 54
SphI GCATGC 1 cut(s) 227
Sse9I AATT 2 cut(s) 97, 191
SsiI CCGC 2 cut(s) 80, 146
StyD4I CCNGG 1 cut(s) 13
TaiI ACGT 1 cut(s) 50
TaqI TCGA 1 cut(s) 63
TaqII GACCGA 1 cut(s) 71
TasI AATT 2 cut(s) 97, 191
TauI GCSGC 1 cut(s) 149
TseI GCWGC 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 54
XapI RAATTY 1 cut(s) 97
XceI RCATGY 1 cut(s) 227
ZraI GACGTC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.