Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Reverse (-)

30864346 .. 30864891

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0307000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTTGGTATGGGGACTGAGGACAAATCGGAATACAAAGCTGTGGAAAGACACTACTAGCAGTACTACAGATATATTGTTCAAGTGCTTCTCTTGGCTTGAAGAATTTCAAAAATCTCGAGCTACTACATCTGCACCGAGATCATCTACTCTGCATACTTGGAAGCCTGCTAGTACTGCTGAGTTCAAACTTAATATTGATGGGGCTTTTGTGCCGCACATGACAAAAGGAGGAATTGGTGGACTTCTCCAGACATCAAATGGCTCAGTAGCAGCCGCCTTTCACTCTGTTTCTCAGTATGTTAGTTCAGCAGATCATGCAAGGCTGGAACTTCTCAAACAATATAACTATTGCTCTGTTATCATTGAAACTGATTGTCAGGTTGCAGTTCATGATATCTACAGCAACTCTTCAATGCCTACAGTGTATGGATCCCTCATTGAAGACATTCAAGCTACCTTAAGAGGTCTGCAGCAGGTGCGAATCAGCTATGCCCCTCGAACTTGCAACAGAGCAGCGCATAGACTAGTTAGCATAGCTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

181

Amino Acids

20.11

Weight (kDa)

9.14

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	65 - 178	9.6e-11	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	466
Acc36I	ACCTGC	1 cut(s)	466
AciI	CCGC	2 cut(s)	215, 276
AclWI	GGATC	2 cut(s)	426, 439
AcsI	RAATTY	1 cut(s)	104
AfaI	GTAC	2 cut(s)	64, 175
AflII	CTTAAG	1 cut(s)	460
AgsI	TTSAA	8 cut(s)	82, 101, 110, 187, 368, 414, 443, 452
AhlI	ACTAGT	1 cut(s)	526
AluBI	AGCT	5 cut(s)	40, 122, 455, 489, 539
AluI	AGCT	5 cut(s)	40, 122, 455, 489, 539
AlwI	GGATC	2 cut(s)	426, 439
Ama87I	CYCGRG	1 cut(s)	117
ApeKI	GCWGC	3 cut(s)	272, 472, 515
ApoI	RAATTY	1 cut(s)	104
Asp700I	GAANNNNTTC	2 cut(s)	105, 447
AspLEI	GCGC	1 cut(s)	520
AvaI	CYCGRG	1 cut(s)	117
BamHI	GGATCC	1 cut(s)	431
BbsI	GAAGAC	1 cut(s)	450
BbvI	GCAGC	3 cut(s)	284, 484, 527
BccI	CCATC	1 cut(s)	194
BcuI	ACTAGT	1 cut(s)	526
BfaI	CTAG	3 cut(s)	57, 171, 527
BfmI	CTRYAG	4 cut(s)	66, 400, 420, 470
BfrI	CTTAAG	1 cut(s)	460
BfuAI	ACCTGC	1 cut(s)	466
BisI	GCNGC	5 cut(s)	215, 273, 276, 473, 516
BlsI	GCNGC	5 cut(s)	216, 274, 277, 474, 517
BmcAI	AGTACT	2 cut(s)	64, 175
BmeT110I	CYCGRG	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	433
BpiI	GAAGAC	1 cut(s)	450
BpmI	CTGGAG	1 cut(s)	233
BseMII	CTCAG	4 cut(s)	8, 171, 279, 308
BseXI	GCAGC	3 cut(s)	284, 484, 527
BsgI	GTGCAG	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	27
BsoBI	CYCGRG	1 cut(s)	117
Bsp143I	GATC	3 cut(s)	140, 313, 431
BspACI	CCGC	2 cut(s)	215, 276
BspCNI	CTCAG	4 cut(s)	9, 172, 278, 307
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	433
BspMAI	CTGCAG	1 cut(s)	474
BspMI	ACCTGC	1 cut(s)	466
BspPI	GGATC	2 cut(s)	426, 439
BspTI	CTTAAG	1 cut(s)	460
BssMI	GATC	3 cut(s)	140, 313, 431
Bst4CI	ACNGT	1 cut(s)	424
Bst6I	CTCTTC	1 cut(s)	415
BstAFI	CTTAAG	1 cut(s)	460
BstAPI	GCANNNNNTGC	2 cut(s)	317, 478
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	4 cut(s)	17, 180, 265, 294
BstHHI	GCGC	1 cut(s)	520
BstKTI	GATC	3 cut(s)	143, 316, 434
BstMBI	GATC	3 cut(s)	140, 313, 431
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 317, 478
BstSFI	CTRYAG	4 cut(s)	66, 400, 420, 470
BstV1I	GCAGC	3 cut(s)	284, 484, 527
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	431
BtsIMutI	CAGTG	1 cut(s)	429
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	1 cut(s)	168
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	1 cut(s)	520
Csp6I	GTAC	2 cut(s)	63, 174
CviAII	CATG	3 cut(s)	220, 317, 392
CviQI	GTAC	2 cut(s)	63, 174
DdeI	CTNAG	4 cut(s)	17, 180, 265, 294
DpnI	GATC	3 cut(s)	142, 315, 433
DpnII	GATC	3 cut(s)	140, 313, 431
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
Eco32I	GATATC	1 cut(s)	397
Eco88I	CYCGRG	1 cut(s)	117
EcoRV	GATATC	1 cut(s)	397
FaeI	CATG	3 cut(s)	223, 320, 395
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	3 cut(s)	219, 316, 391
Fnu4HI	GCNGC	5 cut(s)	215, 273, 276, 473, 516
Fsp4HI	GCNGC	5 cut(s)	215, 273, 276, 473, 516
FspBI	CTAG	3 cut(s)	57, 171, 527
GlaI	GCGC	1 cut(s)	519
GluI	GCNGC	5 cut(s)	215, 273, 276, 473, 516
GsuI	CTGGAG	1 cut(s)	233
HhaI	GCGC	1 cut(s)	520
Hin1II	CATG	3 cut(s)	223, 320, 395
Hin6I	GCGC	1 cut(s)	518
HinP1I	GCGC	1 cut(s)	518
HinfI	GANTC	1 cut(s)	483
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	3 cut(s)	117, 250, 392
Hpy8I	GTNNAC	1 cut(s)	242
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4V	TGCA	6 cut(s)	134, 154, 320, 386, 472, 507
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 317, 478
HpyF3I	CTNAG	4 cut(s)	17, 180, 265, 294
Hsp92II	CATG	3 cut(s)	223, 320, 395
HspAI	GCGC	1 cut(s)	518
Kzo9I	GATC	3 cut(s)	140, 313, 431
LpnPI	CCDG	5 cut(s)	180, 263, 311, 365, 461
Lsp1109I	GCAGC	3 cut(s)	284, 484, 527
MaeI	CTAG	3 cut(s)	57, 171, 527
MalI	GATC	3 cut(s)	142, 315, 433
MboI	GATC	3 cut(s)	140, 313, 431
MboII	GAAGA	3 cut(s)	113, 402, 455
MflI	RGATCY	1 cut(s)	431
MluCI	AATT	2 cut(s)	104, 234
MnlI	CCTC	5 cut(s)	12, 224, 446, 458, 507
MroXI	GAANNNNTTC	2 cut(s)	105, 447
MseI	TTAA	2 cut(s)	192, 461
MspCI	CTTAAG	1 cut(s)	460
MwoI	GCNNNNNNNGC	3 cut(s)	176, 317, 478
NdeII	GATC	3 cut(s)	140, 313, 431
NlaIII	CATG	3 cut(s)	223, 320, 395
NlaIV	GGNNCC	1 cut(s)	433
PaeR7I	CTCGAG	1 cut(s)	117
PagI	TCATGA	1 cut(s)	391
PaqCI	CACCTGC	1 cut(s)	466
PdmI	GAANNNNTTC	2 cut(s)	105, 447
PfeI	GAWTC	1 cut(s)	483
PkrI	GCNGC	5 cut(s)	216, 274, 277, 474, 517
PspN4I	GGNNCC	1 cut(s)	433
PstI	CTGCAG	1 cut(s)	474
PsuI	RGATCY	1 cut(s)	431
RsaI	GTAC	2 cut(s)	64, 175
RsaNI	GTAC	2 cut(s)	63, 174
SaqAI	TTAA	2 cut(s)	192, 461
SatI	GCNGC	5 cut(s)	215, 273, 276, 473, 516
Sau3AI	GATC	3 cut(s)	140, 313, 431
ScaI	AGTACT	2 cut(s)	64, 175
SetI	ASST	9 cut(s)	42, 124, 384, 457, 461, 469, 480, 491, 541
SfcI	CTRYAG	4 cut(s)	66, 400, 420, 470
Sfr274I	CTCGAG	1 cut(s)	117
SlaI	CTCGAG	1 cut(s)	117
SmlI	CTYRAG	2 cut(s)	117, 460
SmoI	CTYRAG	2 cut(s)	117, 460
SpeI	ACTAGT	1 cut(s)	526
Sse9I	AATT	2 cut(s)	104, 234
SsiI	CCGC	2 cut(s)	215, 276
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	3 cut(s)	57, 171, 527
TaaI	ACNGT	1 cut(s)	424
TaqI	TCGA	2 cut(s)	118, 499
TasI	AATT	2 cut(s)	104, 234
TatI	WGTACW	2 cut(s)	62, 173
TauI	GCSGC	2 cut(s)	217, 278
TfiI	GAWTC	1 cut(s)	483
Tru1I	TTAA	2 cut(s)	192, 461
Tru9I	TTAA	2 cut(s)	192, 461
TscAI	CASTG	1 cut(s)	429
TseI	GCWGC	3 cut(s)	272, 472, 515
TspDTI	ATGAA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	429
Vha464I	CTTAAG	1 cut(s)	460
XapI	RAATTY	1 cut(s)	104
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XhoI	CTCGAG	1 cut(s)	117
XmnI	GAANNNNTTC	2 cut(s)	105, 447
XspI	CTAG	3 cut(s)	57, 171, 527
ZrmI	AGTACT	2 cut(s)	64, 175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.