Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Reverse (-)

82413755 .. 82417315

Gene Structure 3561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG579600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGTTCATTCCCGATCTGAAATCAATGGCTTCTTCGTCCTTGAGACCTTCGTCGACGACAACGACAGCGGCCGCGGCGAACAATGGCGGAGCTGGAAGTTCCAAGAGGCAACAACTCCATCCTGCTCGGTAAACGACGTCGTCTGTTTGATCCAAGCTGGCGTCTTCCTCAACTTCATGGTTGAAAGAGGAGGCGGCGCTGATGTTGAGCGTGGAGGCTTCTGCCACAGGTTCGGAGGTGACCGTGGTCGCGGCGGTAGACTCCACGGTGCTGGGCCTGAGAGAATCATGAAGATCATGCCGGTTCAGAAGCAAACCGTTTTGACGAGGAACCTGCTTCGCATTGCTATATTCAATATCACTGGGTATGATATTGATGCATTTTCTGCTCACTTCCTCAATTCCTCTATCTCGGCCATGTTCCGCAACCCCCGTTGGCCATCCCACAAGGTCTTCAACAAGATGTCCTGGACCGACTTTGATTACTGCAAAATCCCGCCAGTCGCAAATGAGGTGTCATTTGCGCATAGGATCATCAATGGGTGCCAAAAGGATGTCCCAGTGGCGCTTATAAGCTTTCACAATTGTAGCCTTGATGCCAAAATCAAGACCAACCTGGAGGCTCAAGTCGTGGAAAAGCCCAGTGAAGTGACTAAGAAGCCTCCCACAGAAATAGGAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

227

Amino Acids

25.42

Weight (kDa)

8.55

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	572
AatII	GACGTC	1 cut(s)	141
Acc16I	TGCGCA	1 cut(s)	525
Acc36I	ACCTGC	1 cut(s)	342
AccB1I	GGYRCC	1 cut(s)	543
AccI	GTMKAC	2 cut(s)	54, 259
AccII	CGCG	2 cut(s)	75, 252
AciI	CCGC	9 cut(s)	69, 73, 75, 88, 195, 252, 255, 424, 497
AclWI	GGATC	2 cut(s)	145, 539
AcoI	YGGCCR	3 cut(s)	70, 414, 437
AcsI	RAATTY	1 cut(s)	678
AcyI	GRCGYC	2 cut(s)	138, 162
AgsI	TTSAA	3 cut(s)	185, 355, 457
AjnI	CCWGG	2 cut(s)	467, 615
AluBI	AGCT	3 cut(s)	93, 158, 576
AluI	AGCT	3 cut(s)	93, 158, 576
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	2 cut(s)	145, 539
AoxI	GGCC	4 cut(s)	70, 275, 414, 437
ApoI	RAATTY	1 cut(s)	678
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
AspLEI	GCGC	3 cut(s)	200, 526, 568
AspS9I	GGNCC	2 cut(s)	275, 471
AsuHPI	GGTGA	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	471
BalI	TGGCCA	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	543
BbsI	GAAGAC	2 cut(s)	157, 445
BccI	CCATC	2 cut(s)	127, 448
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciT130I	CCWGG	2 cut(s)	469, 617
BcoDI	GTCTC	1 cut(s)	38
BfoI	RGCGCY	2 cut(s)	201, 569
BfuAI	ACCTGC	1 cut(s)	342
BisI	GCNGC	5 cut(s)	70, 73, 76, 196, 253
BlsI	GCNGC	5 cut(s)	71, 74, 77, 197, 254
Bme1390I	CCNGG	2 cut(s)	469, 617
Bme18I	GGWCC	1 cut(s)	471
BmgT120I	GGNCC	2 cut(s)	275, 471
BmiI	GGNNCC	2 cut(s)	332, 545
BmrFI	CCNGG	2 cut(s)	469, 617
BmrI	ACTGGG	3 cut(s)	372, 554, 636
BmsI	GCATC	2 cut(s)	367, 586
BmuI	ACTGGG	3 cut(s)	372, 554, 636
BoxI	GACNNNNGTC	2 cut(s)	50, 246
BpiI	GAAGAC	2 cut(s)	157, 445
BpmI	CTGGAG	1 cut(s)	638
BpuEI	CTTGAG	2 cut(s)	62, 609
BsaHI	GRCGYC	2 cut(s)	138, 162
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	3 cut(s)	73, 244, 265
Bse118I	RCCGGY	1 cut(s)	301
Bse1I	ACTGG	4 cut(s)	367, 500, 560, 642
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	469, 617
BseDI	CCNNGG	3 cut(s)	73, 244, 265
BseGI	GGATG	3 cut(s)	119, 440, 559
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	4 cut(s)	367, 500, 560, 642
BseRI	GAGGAG	1 cut(s)	204
BseX3I	CGGCCG	1 cut(s)	70
BseYI	CCCAGC	1 cut(s)	272
Bsh1236I	CGCG	2 cut(s)	75, 252
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	4 cut(s)	72, 277, 416, 439
BshNI	GGYRCC	1 cut(s)	543
BsiEI	CGRYCG	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	302
BslFI	GGGAC	1 cut(s)	542
BsmAI	GTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	542
BsnI	GGCC	4 cut(s)	72, 277, 416, 439
Bso31I	GGTCTC	1 cut(s)	38
Bsp143I	GATC	4 cut(s)	14, 150, 294, 531
BspACI	CCGC	9 cut(s)	69, 73, 75, 88, 195, 252, 255, 424, 497
BspANI	GGCC	4 cut(s)	72, 277, 416, 439
BspCNI	CTCAG	1 cut(s)	271
BspFNI	CGCG	2 cut(s)	75, 252
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	2 cut(s)	332, 545
BspMI	ACCTGC	1 cut(s)	342
BspPI	GGATC	2 cut(s)	145, 539
BspT107I	GGYRCC	1 cut(s)	543
BspTNI	GGTCTC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	301
BsrI	ACTGG	4 cut(s)	367, 500, 560, 642
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	3 cut(s)	73, 244, 265
BssMI	GATC	4 cut(s)	14, 150, 294, 531
BssNI	GRCGYC	2 cut(s)	138, 162
Bst2UI	CCWGG	2 cut(s)	469, 617
Bst4CI	ACNGT	3 cut(s)	245, 269, 319
BstACI	GRCGYC	2 cut(s)	138, 162
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	2 cut(s)	279, 654
BstDSI	CCRYGG	3 cut(s)	73, 244, 265
BstEII	GGTNACC	1 cut(s)	239
BstF5I	GGATG	3 cut(s)	119, 440, 559
BstFNI	CGCG	2 cut(s)	75, 252
BstH2I	RGCGCY	2 cut(s)	201, 569
BstHHI	GCGC	3 cut(s)	200, 526, 568
BstKTI	GATC	4 cut(s)	17, 153, 297, 534
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	4 cut(s)	14, 150, 294, 531
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 386
BstNI	CCWGG	2 cut(s)	469, 617
BstPAI	GACNNNNGTC	2 cut(s)	50, 246
BstPI	GGTNACC	1 cut(s)	239
BstSCI	CCNGG	2 cut(s)	467, 615
BstUI	CGCG	2 cut(s)	75, 252
BstV2I	GAAGAC	2 cut(s)	157, 445
BstXI	CCANNNNNNTGG	1 cut(s)	272
BstZI	CGGCCG	1 cut(s)	70
BsuRI	GGCC	4 cut(s)	72, 277, 416, 439
BtgI	CCRYGG	3 cut(s)	73, 244, 265
BtsCI	GGATG	3 cut(s)	119, 440, 559
BtsIMutI	CAGTG	3 cut(s)	360, 567, 649
BveI	ACCTGC	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	160
CciI	TCATGA	1 cut(s)	288
CciNI	GCGGCCGC	1 cut(s)	70
CfoI	GCGC	3 cut(s)	200, 526, 568
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	275, 471
Cfr42I	CCGCGG	1 cut(s)	76
CseI	GACGC	1 cut(s)	151
CviAII	CATG	4 cut(s)	178, 289, 298, 418
DdeI	CTNAG	2 cut(s)	279, 654
DpnI	GATC	4 cut(s)	16, 152, 296, 533
DpnII	GATC	4 cut(s)	14, 150, 294, 531
EaeI	YGGCCR	3 cut(s)	70, 414, 437
EagI	CGGCCG	1 cut(s)	70
EciI	GGCGGA	1 cut(s)	103
EclXI	CGGCCG	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	471
Eco52I	CGGCCG	1 cut(s)	70
Eco91I	GGTNACC	1 cut(s)	239
EcoO65I	GGTNACC	1 cut(s)	239
EcoRII	CCWGG	2 cut(s)	467, 615
EcoT22I	ATGCAT	1 cut(s)	382
FaeI	CATG	4 cut(s)	181, 292, 301, 421
FaiI	YATR	8 cut(s)	179, 290, 299, 350, 369, 419, 528, 572
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	4 cut(s)	177, 288, 297, 417
FauI	CCCGC	1 cut(s)	504
FblI	GTMKAC	2 cut(s)	54, 259
Fnu4HI	GCNGC	5 cut(s)	70, 73, 76, 196, 253
FokI	GGATG	3 cut(s)	106, 427, 566
Fsp4HI	GCNGC	5 cut(s)	70, 73, 76, 196, 253
FspI	TGCGCA	1 cut(s)	525
GlaI	GCGC	3 cut(s)	199, 525, 567
GluI	GCNGC	5 cut(s)	70, 73, 76, 196, 253
GsaI	CCCAGC	1 cut(s)	276
GsuI	CTGGAG	1 cut(s)	638
HaeII	RGCGCY	2 cut(s)	201, 569
HaeIII	GGCC	4 cut(s)	72, 277, 416, 439
HapII	CCGG	1 cut(s)	302
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	3 cut(s)	200, 526, 568
Hin1I	GRCGYC	2 cut(s)	138, 162
Hin1II	CATG	4 cut(s)	181, 292, 301, 421
Hin6I	GCGC	3 cut(s)	198, 524, 566
HinP1I	GCGC	3 cut(s)	198, 524, 566
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HindIII	AAGCTT	1 cut(s)	574
HinfI	GANTC	2 cut(s)	261, 285
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	3 cut(s)	55, 133, 260
Hpy188I	TCNGA	3 cut(s)	19, 236, 309
Hpy188III	TCNNGA	3 cut(s)	12, 289, 607
Hpy8I	GTNNAC	3 cut(s)	55, 133, 260
Hpy99I	CGWCG	4 cut(s)	56, 59, 140, 143
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	3 cut(s)	245, 269, 319
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	380, 489
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 386
HpyF3I	CTNAG	2 cut(s)	279, 654
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	2 cut(s)	138, 162
Hsp92II	CATG	4 cut(s)	181, 292, 301, 421
HspAI	GCGC	3 cut(s)	198, 524, 566
KspI	CCGCGG	1 cut(s)	76
Kzo9I	GATC	4 cut(s)	14, 150, 294, 531
LmnI	GCTCC	1 cut(s)	90
LweI	GCATC	2 cut(s)	367, 586
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	239, 649
MalI	GATC	4 cut(s)	16, 152, 296, 533
MboI	GATC	4 cut(s)	14, 150, 294, 531
MboII	GAAGA	4 cut(s)	25, 157, 304, 445
MfeI	CAATTG	1 cut(s)	583
MlsI	TGGCCA	1 cut(s)	439
MluCI	AATT	3 cut(s)	400, 583, 678
MluNI	TGGCCA	1 cut(s)	439
MlyI	GAGTC	1 cut(s)	255
Mox20I	TGGCCA	1 cut(s)	439
Mph1103I	ATGCAT	1 cut(s)	382
MscI	TGGCCA	1 cut(s)	439
Msp20I	TGGCCA	1 cut(s)	439
MspA1I	CMGCKG	2 cut(s)	69, 75
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	2 cut(s)	469, 617
MunI	CAATTG	1 cut(s)	583
MvaI	CCWGG	2 cut(s)	469, 617
MvnI	CGCG	2 cut(s)	75, 252
MwoI	GCNNNNNNNGC	2 cut(s)	75, 386
NdeII	GATC	4 cut(s)	14, 150, 294, 531
NlaIII	CATG	4 cut(s)	181, 292, 301, 421
NlaIV	GGNNCC	2 cut(s)	332, 545
NmeAIII	GCCGAG	1 cut(s)	392
NmuCI	GTSAC	2 cut(s)	239, 649
NotI	GCGGCCGC	1 cut(s)	70
NsbI	TGCGCA	1 cut(s)	525
NsiI	ATGCAT	1 cut(s)	382
PagI	TCATGA	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	285
PflFI	GACNNNGTC	1 cut(s)	140
PfoI	TCCNGGA	1 cut(s)	467
PkrI	GCNGC	5 cut(s)	71, 74, 77, 197, 254
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
PshAI	GACNNNNGTC	2 cut(s)	50, 246
PsiI	TTATAA	1 cut(s)	572
Psp6I	CCWGG	2 cut(s)	467, 615
PspEI	GGTNACC	1 cut(s)	239
PspFI	CCCAGC	1 cut(s)	272
PspGI	CCWGG	2 cut(s)	467, 615
PspN4I	GGNNCC	2 cut(s)	332, 545
PspPI	GGNCC	2 cut(s)	275, 471
PsyI	GACNNNGTC	1 cut(s)	140
SacII	CCGCGG	1 cut(s)	76
SalI	GTCGAC	1 cut(s)	53
SatI	GCNGC	5 cut(s)	70, 73, 76, 196, 253
Sau3AI	GATC	4 cut(s)	14, 150, 294, 531
Sau96I	GGNCC	2 cut(s)	275, 471
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	2 cut(s)	469, 617
SfaNI	GCATC	2 cut(s)	367, 586
Sfr303I	CCGCGG	1 cut(s)	76
SgrBI	CCGCGG	1 cut(s)	76
SgrDI	CGTCGACG	1 cut(s)	53
SinI	GGWCC	1 cut(s)	471
SmlI	CTYRAG	2 cut(s)	41, 624
SmoI	CTYRAG	2 cut(s)	41, 624
Sse9I	AATT	3 cut(s)	400, 583, 678
SsiI	CCGC	9 cut(s)	69, 73, 75, 88, 195, 252, 255, 424, 497
StyD4I	CCNGG	2 cut(s)	467, 615
TaaI	ACNGT	3 cut(s)	245, 269, 319
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	54
TaqII	GACCGA	1 cut(s)	488
TasI	AATT	3 cut(s)	400, 583, 678
TauI	GCSGC	5 cut(s)	72, 75, 78, 198, 255
TfiI	GAWTC	1 cut(s)	285
TscAI	CASTG	3 cut(s)	367, 567, 649
TseFI	GTSAC	2 cut(s)	239, 649
Tsp45I	GTSAC	2 cut(s)	239, 649
TspDTI	ATGAA	2 cut(s)	166, 305
TspRI	CASTG	3 cut(s)	367, 567, 649
Tth111I	GACNNNGTC	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	471
XapI	RAATTY	1 cut(s)	678
XmiI	GTMKAC	2 cut(s)	54, 259
ZraI	GACGTC	1 cut(s)	139
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.