Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Forward (+)

64121771 .. 64123140

Gene Structure 1370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G037580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGAAGCGGGTCAATCAAATCGAACCCAACAAGGTCGAGGAAGAGGGTGGAGGCCACGGCGGAGGACTCGGCTGGGCCTTCTCTCCTTCGCGGCAAAGATGGCAGTGCTTTTGCCAGATGCGATGGGTGCCAAAAGAATGTCCCAGTGGCGCTCATAAGCTTTCACAATTGTAGCCTTGATGCCAAAATCAAGACCAACCTGGAGGCTCAAGTCGTGGAAAAGCCCAGTGAAGTGACTAAGAAGCCTCCCACAGAGAGGAAGAAATCGTCACAACCAAATGCCAAGAGAGCCAAGACTGACAAAGTGAACAAGAGCAAGGATCCAAATGCACCCAAGCGCCCTCTCACTGCCTTCTTCCTTTTCATGAATGATTTTAGGAAAGCCTACAAGGAAGCTAATCCTGATTCCAAGGGTGTTAAGATGGTTGCAAAGGAGGGTGGTGAAAAGTGGAATCTTATGACTGATGAGGAGAAGAAGCCTTATATGGACAAAGCTGCTGAGCTTAAAGATGAGTACAAGAAGACCTTAGAGACTGAAGCTGATGATGCTGAAGGTGAGGCTGAAGATGTTTCAGAAAAGCAAGTCCCAGAGAAGGAAGTAGAGGAAGCTTCAGAAAAGGAAGTGGAGGAAGCATCAGATGGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

216

Amino Acids

23.89

Weight (kDa)

5.82

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	109 - 178	3.1e-13	HMG-box domain
HMG_box	PF00505	112 - 176	6.4e-19	HMG (high mobility group) box
HMG_WDHD1	PF24815	115 - 165	5.6e-14	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	129
AccII	CGCG	1 cut(s)	93
AciI	CCGC	3 cut(s)	9, 62, 93
AclWI	GGATC	2 cut(s)	317, 330
AcuI	CTGAAG	4 cut(s)	558, 573, 585, 597
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	2 cut(s)	258, 595
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	6 cut(s)	162, 398, 497, 505, 542, 611
AluI	AGCT	6 cut(s)	162, 398, 497, 505, 542, 611
Alw26I	GTCTC	1 cut(s)	527
AlwI	GGATC	2 cut(s)	317, 330
AoxI	GGCC	2 cut(s)	54, 77
ApeKI	GCWGC	1 cut(s)	497
AspLEI	GCGC	2 cut(s)	154, 342
AspS9I	GGNCC	1 cut(s)	77
AsuHPI	GGTGA	2 cut(s)	455, 569
BamHI	GGATCC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	530
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	4 cut(s)	95, 119, 418, 635
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	527
BfoI	RGCGCY	2 cut(s)	155, 343
BisI	GCNGC	2 cut(s)	94, 498
BlpI	GCTNAGC	1 cut(s)	501
BlsI	GCNGC	2 cut(s)	95, 499
Bme1390I	CCNGG	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	131, 324
BmrFI	CCNGG	1 cut(s)	203
BmrI	ACTGGG	2 cut(s)	140, 222
BmsI	GCATC	4 cut(s)	110, 172, 538, 644
BmuI	ACTGGG	2 cut(s)	140, 222
BpiI	GAAGAC	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	224
Bpu1102I	GCTNAGC	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	57, 411
Bsc4I	CCNNNNNNNGG	2 cut(s)	258, 595
Bse1I	ACTGG	2 cut(s)	146, 228
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	2 cut(s)	57, 411
BseLI	CCNNNNNNNGG	2 cut(s)	258, 595
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	2 cut(s)	146, 228
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	1 cut(s)	484
BseYI	CCCAGC	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	56, 79
BshNI	GGYRCC	1 cut(s)	129
BslFI	GGGAC	2 cut(s)	128, 572
BslI	CCNNNNNNNGG	2 cut(s)	258, 595
BsmAI	GTCTC	1 cut(s)	527
BsmFI	GGGAC	2 cut(s)	128, 572
BsnI	GGCC	2 cut(s)	56, 79
Bsp143I	GATC	1 cut(s)	322
Bsp1720I	GCTNAGC	1 cut(s)	501
BspACI	CCGC	3 cut(s)	9, 62, 93
BspANI	GGCC	2 cut(s)	56, 79
BspCNI	CTCAG	1 cut(s)	493
BspFNI	CGCG	1 cut(s)	93
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	131, 324
BspPI	GGATC	2 cut(s)	317, 330
BspT107I	GGYRCC	1 cut(s)	129
BsrI	ACTGG	2 cut(s)	146, 228
BssECI	CCNNGG	2 cut(s)	57, 411
BssMI	GATC	1 cut(s)	322
BssT1I	CCWWGG	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	38
BstDEI	CTNAG	3 cut(s)	240, 501, 529
BstDSI	CCRYGG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	93
BstH2I	RGCGCY	2 cut(s)	155, 343
BstHHI	GCGC	2 cut(s)	154, 342
BstKTI	GATC	1 cut(s)	325
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 129, 290, 548
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	484
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuRI	GGCC	2 cut(s)	56, 79
BtgI	CCRYGG	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	138
BtsI	GCAGTG	2 cut(s)	112, 348
BtsIMutI	CAGTG	4 cut(s)	112, 153, 235, 348
CciI	TCATGA	1 cut(s)	366
CfoI	GCGC	2 cut(s)	154, 342
Cfr13I	GGNCC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	1 cut(s)	367
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	3 cut(s)	240, 501, 529
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	411
Eco57I	CTGAAG	4 cut(s)	558, 573, 585, 597
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	1 cut(s)	370
FaiI	YATR	5 cut(s)	158, 368, 461, 486, 488
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FaqI	GGGAC	2 cut(s)	128, 572
FatI	CATG	1 cut(s)	366
FauI	CCCGC	1 cut(s)	2
Fnu4HI	GCNGC	2 cut(s)	94, 498
Fsp4HI	GCNGC	2 cut(s)	94, 498
GlaI	GCGC	2 cut(s)	153, 341
GluI	GCNGC	2 cut(s)	94, 498
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	224
HaeII	RGCGCY	2 cut(s)	155, 343
HaeIII	GGCC	2 cut(s)	56, 79
HhaI	GCGC	2 cut(s)	154, 342
Hin1II	CATG	1 cut(s)	370
Hin6I	GCGC	2 cut(s)	152, 340
HinP1I	GCGC	2 cut(s)	152, 340
HindIII	AAGCTT	2 cut(s)	160, 609
HinfI	GANTC	3 cut(s)	68, 407, 454
HphI	GGTGA	2 cut(s)	455, 569
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	3 cut(s)	577, 616, 640
Hpy188III	TCNNGA	3 cut(s)	193, 367, 404
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	5 cut(s)	90, 98, 364, 548, 589
HpyCH4V	TGCA	2 cut(s)	332, 431
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 129, 290, 548
HpyF3I	CTNAG	3 cut(s)	240, 501, 529
Hsp92II	CATG	1 cut(s)	370
HspAI	GCGC	2 cut(s)	152, 340
Kzo9I	GATC	1 cut(s)	322
LpnPI	CCDG	8 cut(s)	60, 130, 159, 188, 215, 241, 417, 603
Lsp1109I	GCAGC	1 cut(s)	484
LweI	GCATC	4 cut(s)	110, 172, 538, 644
MaeIII	GTNAC	2 cut(s)	235, 270
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	6 cut(s)	55, 274, 349, 487, 535, 578
MfeI	CAATTG	1 cut(s)	169
MflI	RGATCY	1 cut(s)	322
MluCI	AATT	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	62
MseI	TTAA	2 cut(s)	420, 507
MspR9I	CCNGG	1 cut(s)	203
MunI	CAATTG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	203
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	4 cut(s)	102, 129, 290, 548
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	1 cut(s)	370
NlaIV	GGNNCC	2 cut(s)	131, 324
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	2 cut(s)	235, 270
PagI	TCATGA	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	407, 454
PkrI	GCNGC	2 cut(s)	95, 499
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	201
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	131, 324
PspPI	GGNCC	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
SaqAI	TTAA	2 cut(s)	420, 507
SatI	GCNGC	2 cut(s)	94, 498
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	203
SfaNI	GCATC	4 cut(s)	110, 172, 538, 644
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	3 cut(s)	9, 62, 93
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	411
TaqI	TCGA	2 cut(s)	23, 38
TasI	AATT	1 cut(s)	169
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	2 cut(s)	407, 454
Tru1I	TTAA	2 cut(s)	420, 507
Tru9I	TTAA	2 cut(s)	420, 507
TscAI	CASTG	4 cut(s)	112, 153, 235, 355
TseFI	GTSAC	2 cut(s)	235, 270
TseI	GCWGC	1 cut(s)	497
Tsp45I	GTSAC	2 cut(s)	235, 270
TspDTI	ATGAA	2 cut(s)	355, 383
TspRI	CASTG	4 cut(s)	112, 153, 235, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.